Wall clock time and date at job start Tue Mar 31 2020 22:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39793 * 120.00808 * 166.42588 * 3 2 1 5 5 C 1.37597 * 119.99293 * 180.02562 * 4 3 2 6 6 C 1.39716 * 120.00643 * 359.97438 * 5 4 3 7 7 C 1.47731 * 119.99173 * 179.97438 * 6 5 4 8 8 N 1.31289 * 126.37858 * 0.02562 * 7 6 5 9 9 N 1.28659 * 109.23446 * 179.75452 * 8 7 6 10 10 C 1.30449 * 109.51891 * 0.40925 * 9 8 7 11 11 C 1.50701 * 126.18455 * 179.85856 * 10 9 8 12 12 N 1.46901 * 109.46887 * 89.69132 * 11 10 9 13 13 C 1.48559 * 110.99984 * 69.87631 * 12 11 10 14 14 C 1.54381 * 104.59233 * 159.03963 * 13 12 11 15 15 C 1.54258 * 105.06435 * 336.14775 * 14 13 12 16 16 O 1.42903 * 110.32662 * 118.99514 * 15 14 13 17 17 C 1.50695 * 110.32588 * 241.10556 * 15 14 13 18 18 H 1.08003 * 120.00350 * 117.37843 * 17 15 14 19 19 C 1.37882 * 119.99786 * 297.38542 * 17 15 14 20 20 N 1.31510 * 119.99950 * 3.75410 * 19 17 15 21 21 Si 1.86801 * 119.99828 * 183.75573 * 19 17 15 22 22 H 1.48505 * 109.47086 * 84.97616 * 21 19 17 23 23 H 1.48499 * 109.47060 * 204.97693 * 21 19 17 24 24 H 1.48506 * 109.47386 * 324.97951 * 21 19 17 25 25 C 1.48558 * 110.99900 * 185.29657 * 12 11 10 26 26 O 1.34359 * 107.63726 * 359.60173 * 10 9 8 27 27 C 1.39715 * 120.01763 * 0.26231 * 6 5 4 28 28 C 1.37601 * 120.01099 * 359.48437 * 27 6 5 29 29 H 1.07997 * 119.99963 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.99360 * 179.97438 * 5 4 3 31 31 H 1.09005 * 109.46973 * 329.69484 * 11 10 9 32 32 H 1.08993 * 109.47575 * 209.69096 * 11 10 9 33 33 H 1.08997 * 110.41338 * 40.26078 * 13 12 11 34 34 H 1.09002 * 110.40861 * 277.81583 * 13 12 11 35 35 H 1.09006 * 110.32372 * 95.04375 * 14 13 12 36 36 H 1.09000 * 110.32366 * 217.14334 * 14 13 12 37 37 H 0.96704 * 113.99627 * 54.28848 * 16 15 14 38 38 H 0.97003 * 119.99683 * 180.02562 * 20 19 17 39 39 H 1.09004 * 110.41654 * 82.18139 * 25 12 11 40 40 H 1.09002 * 110.51507 * 319.78556 * 25 12 11 41 41 H 1.08008 * 119.99779 * 179.72110 * 27 6 5 42 42 H 1.07995 * 120.00630 * 180.23385 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2666 1.1777 -0.2841 5 6 4.6426 1.1778 -0.2846 6 6 5.3415 0.0018 -0.0005 7 6 6.8188 0.0022 -0.0016 8 7 7.5971 1.0299 -0.2503 9 7 8.8267 0.6628 -0.1572 10 6 8.8813 -0.6054 0.1436 11 6 10.1338 -1.4201 0.3398 12 7 10.5416 -1.3593 1.7498 13 6 9.5914 -2.1086 2.6115 14 6 10.3908 -2.4165 3.8958 15 6 11.8717 -2.3752 3.4659 16 8 12.5692 -1.3562 4.1850 17 6 12.5212 -3.7153 3.6964 18 1 12.9098 -4.2781 2.8605 19 6 12.6194 -4.2230 4.9746 20 7 12.0812 -3.5732 5.9834 21 14 13.5170 -5.8338 5.2734 22 1 14.9713 -5.5705 5.4187 23 1 13.0016 -6.4647 6.5150 24 1 13.2917 -6.7467 4.1239 25 6 11.8424 -2.0459 1.9578 26 8 7.6190 -1.0527 0.2523 27 6 4.6437 -1.1759 0.2786 28 6 3.2677 -1.1757 0.2844 29 1 2.7264 2.0866 -0.5041 30 1 5.1823 2.0870 -0.5044 31 1 10.9304 -1.0182 -0.2865 32 1 9.9407 -2.4561 0.0618 33 1 9.2844 -3.0338 2.1239 34 1 8.7220 -1.4933 2.8432 35 1 10.1956 -1.6582 4.6542 36 1 10.1324 -3.4053 4.2748 37 1 12.4888 -1.4279 5.1460 38 1 12.1506 -3.9302 6.8826 39 1 12.6680 -1.3835 1.6973 40 1 11.8899 -2.9613 1.3679 41 1 5.1843 -2.0859 0.4937 42 1 2.7283 -2.0852 0.5039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:11 Heat of formation + Delta-G solvation = 60.065190 kcal Electronic energy + Delta-G solvation = -27781.144676 eV Core-core repulsion = 23728.722521 eV Total energy + Delta-G solvation = -4052.422155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.25070 -39.98342 -38.59225 -36.96474 -36.28497 -35.20090 -33.36842 -32.20559 -31.80971 -31.46131 -29.42479 -28.13288 -26.60252 -25.25821 -24.26256 -23.47870 -22.53752 -22.19613 -20.55089 -19.59613 -19.53650 -18.04458 -17.51027 -17.10535 -16.53963 -15.96054 -15.59580 -15.17369 -15.07929 -14.81052 -14.58219 -14.41361 -14.18153 -14.07529 -13.66612 -13.48471 -13.27707 -13.06186 -12.75400 -12.61176 -12.50977 -12.44108 -12.06123 -11.75791 -11.71920 -11.35930 -11.29084 -11.14129 -11.04530 -10.70192 -10.66155 -10.49325 -10.39914 -9.96723 -9.70969 -9.29629 -8.96066 -8.65784 -8.25312 -8.10072 -6.27145 -4.35833 -0.29911 0.70930 1.17188 1.95892 2.15415 2.15943 2.60402 3.18525 3.25787 3.27148 3.27669 3.30843 3.48356 4.05045 4.22860 4.23061 4.32214 4.42413 4.58185 4.68633 4.97442 5.00023 5.01548 5.11954 5.13385 5.35122 5.36654 5.49526 5.54650 5.59931 5.63553 5.77504 5.78581 5.82709 5.99301 6.05806 6.24084 6.43589 6.74967 6.87519 6.95992 7.10755 7.26352 7.32521 7.45403 7.72394 8.11312 8.16220 8.66234 9.33027 9.44806 10.79805 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.002184 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.516604 B =12816.534042 C =13799.760881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.253 3.747 3 C -0.011 4.011 4 C -0.069 4.069 5 C -0.071 4.071 6 C 0.017 3.983 7 C 0.182 3.818 8 N -0.263 5.263 9 N -0.272 5.272 10 C 0.202 3.798 11 C 0.132 3.868 12 N -0.505 5.505 13 C 0.028 3.972 14 C -0.119 4.119 15 C 0.255 3.745 16 O -0.582 6.582 17 C -0.538 4.538 18 H 0.061 0.939 19 C 0.072 3.928 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.052 3.948 26 O -0.216 6.216 27 C -0.087 4.087 28 C -0.068 4.068 29 H 0.145 0.855 30 H 0.152 0.848 31 H 0.122 0.878 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.378 0.622 38 H 0.267 0.733 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.145 0.855 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.567 4.190 -12.155 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.063 4.063 3 C -0.015 4.015 4 C -0.089 4.089 5 C -0.091 4.091 6 C 0.014 3.986 7 C -0.026 4.026 8 N -0.112 5.112 9 N -0.120 5.120 10 C -0.008 4.008 11 C 0.003 3.997 12 N -0.230 5.230 13 C -0.100 4.100 14 C -0.158 4.158 15 C 0.215 3.785 16 O -0.390 6.390 17 C -0.577 4.577 18 H 0.079 0.921 19 C -0.131 4.131 20 N -0.531 5.531 21 Si 0.727 3.273 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.074 4.074 26 O -0.095 6.095 27 C -0.106 4.106 28 C -0.089 4.089 29 H 0.163 0.837 30 H 0.170 0.830 31 H 0.140 0.860 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.227 0.773 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.163 0.837 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.752 6.134 -12.725 21.158 hybrid contribution 0.309 -3.127 0.941 3.280 sum -15.442 3.007 -11.783 19.656 Atomic orbital electron populations 1.81297 1.11987 1.07020 1.08095 1.25627 0.92556 0.94063 0.94058 1.16198 0.84526 0.95601 1.05203 1.21119 0.93465 0.97138 0.97206 1.21131 0.93359 0.97625 0.96938 1.17441 0.83671 0.95437 1.02004 1.25238 0.94089 0.81691 1.01601 1.74723 0.96187 1.24114 1.16131 1.74495 1.11279 1.09131 1.17048 1.28138 0.84483 0.91836 0.96347 1.20804 0.87580 0.96450 0.94914 1.65531 1.04602 1.51100 1.01789 1.23277 0.95539 0.95062 0.96109 1.22887 0.97391 1.01667 0.93806 1.19190 0.87631 0.86153 0.85554 1.86163 1.76225 1.53356 1.23288 1.21636 1.39492 1.03173 0.93385 0.92117 1.24989 0.94500 0.97605 0.96033 1.69739 1.43679 1.39786 0.99882 0.86503 0.80196 0.82988 0.77656 1.20328 1.21163 1.19923 1.23155 0.89231 0.96127 0.98874 1.84836 1.17745 1.39207 1.67703 1.21234 0.93866 0.97716 0.97802 1.21099 0.93511 0.97225 0.97046 0.83737 0.83017 0.85971 0.91182 0.94167 0.92166 0.92595 0.90539 0.77285 0.92285 0.90055 0.92890 0.83717 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.22 18.54 41.84 0.78 -3.45 16 2 C 0.25 1.95 15.32 -22.47 -0.34 1.61 16 3 C -0.01 -0.07 5.74 -106.81 -0.61 -0.68 16 4 C -0.07 -0.36 9.74 -39.23 -0.38 -0.74 16 5 C -0.07 -0.48 9.68 -39.26 -0.38 -0.86 16 6 C 0.02 0.15 5.88 -104.91 -0.62 -0.47 16 7 C 0.18 2.23 7.98 -13.91 -0.11 2.12 16 8 N -0.26 -3.82 11.91 32.06 0.38 -3.44 16 9 N -0.27 -4.35 12.22 32.58 0.40 -3.96 16 10 C 0.20 2.94 7.47 -12.87 -0.10 2.84 16 11 C 0.13 1.83 5.44 -4.97 -0.03 1.80 16 12 N -0.50 -8.97 5.36 -231.40 -1.24 -10.21 16 13 C 0.03 0.50 5.98 -2.18 -0.01 0.49 16 14 C -0.12 -2.60 5.48 -25.35 -0.14 -2.74 16 15 C 0.26 5.97 1.05 -90.39 -0.09 5.88 16 16 O -0.58 -14.74 12.92 -35.23 -0.46 -15.20 16 17 C -0.54 -13.59 8.07 -34.44 -0.28 -13.87 16 18 H 0.06 1.51 7.57 -52.48 -0.40 1.11 16 19 C 0.07 1.81 5.09 -17.82 -0.09 1.72 16 20 N -0.89 -22.94 10.88 55.43 0.60 -22.34 16 21 Si 0.90 19.84 29.54 -169.99 -5.02 14.81 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 C 0.05 1.03 5.76 -2.18 -0.01 1.02 16 26 O -0.22 -2.87 10.65 4.11 0.04 -2.83 16 27 C -0.09 -0.59 9.70 -39.26 -0.38 -0.97 16 28 C -0.07 -0.37 9.74 -39.23 -0.38 -0.75 16 29 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 30 H 0.15 0.96 7.85 -52.49 -0.41 0.55 16 31 H 0.12 1.48 8.13 -51.93 -0.42 1.06 16 32 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 33 H 0.04 0.67 7.82 -51.93 -0.41 0.27 16 34 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 35 H 0.06 1.28 7.97 -51.93 -0.41 0.86 16 36 H 0.08 1.79 7.24 -51.93 -0.38 1.42 16 37 H 0.38 9.64 7.48 45.56 0.34 9.98 16 38 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 39 H 0.08 1.60 8.08 -51.93 -0.42 1.18 16 40 H 0.05 0.97 7.55 -51.93 -0.39 0.57 16 41 H 0.15 0.88 7.92 -52.48 -0.42 0.47 16 42 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -29.91 369.47 -7.03 -36.95 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -4.13 Total: 7.68 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -3.96 Total: -3.60 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.92 Total: -43.39 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.41 Total: -18.03 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.91 -7.03 -36.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.011 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds