Wall clock time and date at job start Tue Mar 31 2020 22:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39793 * 120.00808 * 166.42588 * 3 2 1 5 5 C 1.37597 * 119.99293 * 180.02562 * 4 3 2 6 6 C 1.39716 * 120.00643 * 359.97438 * 5 4 3 7 7 C 1.47731 * 119.99173 * 179.97438 * 6 5 4 8 8 N 1.31289 * 126.37858 * 0.02562 * 7 6 5 9 9 N 1.28659 * 109.23446 * 179.75452 * 8 7 6 10 10 C 1.30449 * 109.51891 * 0.40925 * 9 8 7 11 11 C 1.50701 * 126.18455 * 179.85856 * 10 9 8 12 12 N 1.46901 * 109.46887 * 89.69132 * 11 10 9 13 13 C 1.48559 * 110.99984 * 69.87631 * 12 11 10 14 14 C 1.54381 * 104.59233 * 159.03963 * 13 12 11 15 15 C 1.54258 * 105.06435 * 336.14775 * 14 13 12 16 16 O 1.42903 * 110.32662 * 118.99514 * 15 14 13 17 17 C 1.50695 * 110.32588 * 241.10556 * 15 14 13 18 18 H 1.08003 * 120.00350 * 117.37843 * 17 15 14 19 19 C 1.37882 * 119.99786 * 297.38542 * 17 15 14 20 20 N 1.31510 * 119.99950 * 3.75410 * 19 17 15 21 21 Si 1.86801 * 119.99828 * 183.75573 * 19 17 15 22 22 H 1.48505 * 109.47086 * 84.97616 * 21 19 17 23 23 H 1.48499 * 109.47060 * 204.97693 * 21 19 17 24 24 H 1.48506 * 109.47386 * 324.97951 * 21 19 17 25 25 C 1.48558 * 110.99900 * 185.29657 * 12 11 10 26 26 O 1.34359 * 107.63726 * 359.60173 * 10 9 8 27 27 C 1.39715 * 120.01763 * 0.26231 * 6 5 4 28 28 C 1.37601 * 120.01099 * 359.48437 * 27 6 5 29 29 H 1.07997 * 119.99963 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.99360 * 179.97438 * 5 4 3 31 31 H 1.09005 * 109.46973 * 329.69484 * 11 10 9 32 32 H 1.08993 * 109.47575 * 209.69096 * 11 10 9 33 33 H 1.08997 * 110.41338 * 40.26078 * 13 12 11 34 34 H 1.09002 * 110.40861 * 277.81583 * 13 12 11 35 35 H 1.09006 * 110.32372 * 95.04375 * 14 13 12 36 36 H 1.09000 * 110.32366 * 217.14334 * 14 13 12 37 37 H 0.96704 * 113.99627 * 54.28848 * 16 15 14 38 38 H 0.97003 * 119.99683 * 180.02562 * 20 19 17 39 39 H 1.09004 * 110.41654 * 82.18139 * 25 12 11 40 40 H 1.09002 * 110.51507 * 319.78556 * 25 12 11 41 41 H 1.08008 * 119.99779 * 179.72110 * 27 6 5 42 42 H 1.07995 * 120.00630 * 180.23385 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2666 1.1777 -0.2841 5 6 4.6426 1.1778 -0.2846 6 6 5.3415 0.0018 -0.0005 7 6 6.8188 0.0022 -0.0016 8 7 7.5971 1.0299 -0.2503 9 7 8.8267 0.6628 -0.1572 10 6 8.8813 -0.6054 0.1436 11 6 10.1338 -1.4201 0.3398 12 7 10.5416 -1.3593 1.7498 13 6 9.5914 -2.1086 2.6115 14 6 10.3908 -2.4165 3.8958 15 6 11.8717 -2.3752 3.4659 16 8 12.5692 -1.3562 4.1850 17 6 12.5212 -3.7153 3.6964 18 1 12.9098 -4.2781 2.8605 19 6 12.6194 -4.2230 4.9746 20 7 12.0812 -3.5732 5.9834 21 14 13.5170 -5.8338 5.2734 22 1 14.9713 -5.5705 5.4187 23 1 13.0016 -6.4647 6.5150 24 1 13.2917 -6.7467 4.1239 25 6 11.8424 -2.0459 1.9578 26 8 7.6190 -1.0527 0.2523 27 6 4.6437 -1.1759 0.2786 28 6 3.2677 -1.1757 0.2844 29 1 2.7264 2.0866 -0.5041 30 1 5.1823 2.0870 -0.5044 31 1 10.9304 -1.0182 -0.2865 32 1 9.9407 -2.4561 0.0618 33 1 9.2844 -3.0338 2.1239 34 1 8.7220 -1.4933 2.8432 35 1 10.1956 -1.6582 4.6542 36 1 10.1324 -3.4053 4.2748 37 1 12.4888 -1.4279 5.1460 38 1 12.1506 -3.9302 6.8826 39 1 12.6680 -1.3835 1.6973 40 1 11.8899 -2.9613 1.3679 41 1 5.1843 -2.0859 0.4937 42 1 2.7283 -2.0852 0.5039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:10 Heat of formation + Delta-G solvation = 35.906702 kcal Electronic energy + Delta-G solvation = -27782.192266 eV Core-core repulsion = 23728.722521 eV Total energy + Delta-G solvation = -4053.469745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.26995 -40.53224 -40.14151 -37.65276 -37.32305 -36.85057 -34.26367 -34.15314 -32.62490 -32.30065 -30.65123 -29.77256 -27.91603 -26.28555 -25.72020 -24.26608 -23.33894 -23.17135 -21.96464 -21.33796 -20.08021 -19.06641 -18.78112 -18.54440 -17.49743 -17.16008 -16.91481 -16.60045 -16.05795 -15.91607 -15.64029 -15.30427 -15.18005 -14.94678 -14.63880 -14.62650 -14.35298 -14.19527 -13.95444 -13.70047 -13.53592 -13.32860 -13.22813 -13.18286 -12.97643 -12.88661 -12.75263 -12.42318 -12.34027 -12.27826 -12.19115 -12.02226 -11.75413 -11.34388 -11.08890 -10.58136 -10.17057 -10.09840 -9.74141 -9.50948 -8.18190 -6.33206 -0.96838 0.24696 0.28161 1.01312 1.20980 1.43358 1.46618 1.53611 1.54382 1.90893 2.40472 2.53429 2.72745 2.76197 3.07413 3.07541 3.19141 3.63902 3.79283 3.91654 3.93855 4.01719 4.06256 4.11426 4.18367 4.22914 4.38521 4.43465 4.49003 4.51834 4.59814 4.67789 4.84938 4.93587 5.01661 5.12102 5.12973 5.17103 5.25660 5.39236 5.56826 5.59731 5.63984 5.82756 5.93213 6.25605 6.36006 6.73606 7.12982 7.38169 7.47204 8.87207 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.002184 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.516604 B =12816.534042 C =13799.760881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.279 3.721 3 C -0.007 4.007 4 C -0.056 4.056 5 C -0.069 4.069 6 C -0.008 4.008 7 C 0.200 3.800 8 N -0.294 5.294 9 N -0.299 5.299 10 C 0.194 3.806 11 C 0.135 3.865 12 N -0.518 5.518 13 C 0.041 3.959 14 C -0.110 4.110 15 C 0.234 3.766 16 O -0.595 6.595 17 C -0.555 4.555 18 H 0.061 0.939 19 C 0.028 3.972 20 N -0.911 5.911 21 Si 0.957 3.043 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.267 1.267 25 C 0.063 3.937 26 O -0.217 6.217 27 C -0.082 4.082 28 C -0.058 4.058 29 H 0.169 0.831 30 H 0.154 0.846 31 H 0.139 0.861 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.055 0.945 37 H 0.371 0.629 38 H 0.267 0.733 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.152 0.848 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.815 3.340 -13.451 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.036 4.036 3 C -0.011 4.011 4 C -0.076 4.076 5 C -0.088 4.088 6 C -0.010 4.010 7 C -0.008 4.008 8 N -0.141 5.141 9 N -0.146 5.146 10 C -0.017 4.017 11 C 0.006 3.994 12 N -0.244 5.244 13 C -0.086 4.086 14 C -0.149 4.149 15 C 0.195 3.805 16 O -0.402 6.402 17 C -0.594 4.594 18 H 0.079 0.921 19 C -0.172 4.172 20 N -0.551 5.551 21 Si 0.783 3.217 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.064 4.064 26 O -0.096 6.096 27 C -0.102 4.102 28 C -0.078 4.078 29 H 0.187 0.813 30 H 0.171 0.829 31 H 0.157 0.843 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.219 0.781 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.170 0.830 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.007 5.302 -14.045 22.686 hybrid contribution 0.583 -2.825 1.336 3.179 sum -16.424 2.477 -12.709 20.914 Atomic orbital electron populations 1.81337 1.13376 1.08524 1.09742 1.25718 0.92536 0.92669 0.92670 1.16262 0.83557 0.96172 1.05148 1.21310 0.92732 0.97831 0.95759 1.21195 0.93883 0.97143 0.96579 1.17648 0.81852 0.97048 1.04464 1.25916 0.95232 0.80790 0.98891 1.74663 0.96027 1.25073 1.18332 1.74417 1.12350 1.10011 1.17806 1.28109 0.85021 0.91601 0.97000 1.20900 0.87967 0.98033 0.92511 1.65392 1.03668 1.50947 1.04351 1.23108 0.95020 0.96068 0.94443 1.22651 0.97417 0.99689 0.95174 1.19529 0.87965 0.85313 0.87742 1.86160 1.76897 1.54226 1.22930 1.21941 1.39715 1.04095 0.93601 0.92067 1.25678 0.95164 1.00398 0.95998 1.69838 1.44342 1.40880 1.00011 0.85596 0.78707 0.79811 0.77605 1.20609 1.21061 1.19119 1.22963 0.90232 0.96910 0.96276 1.84834 1.17475 1.39420 1.67885 1.21319 0.94316 0.97296 0.97265 1.21293 0.92921 0.97881 0.95741 0.81332 0.82862 0.84317 0.88589 0.92301 0.91707 0.94694 0.92643 0.78058 0.92389 0.90430 0.91297 0.82996 0.81625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.71 18.54 19.00 0.35 -8.36 16 2 C 0.28 3.68 15.32 88.33 1.35 5.03 16 3 C -0.01 -0.07 5.74 -21.28 -0.12 -0.19 16 4 C -0.06 -0.43 9.74 22.49 0.22 -0.21 16 5 C -0.07 -0.79 9.68 22.48 0.22 -0.57 16 6 C -0.01 -0.12 5.88 -20.05 -0.12 -0.23 16 7 C 0.20 4.68 7.98 87.29 0.70 5.37 16 8 N -0.29 -8.39 11.91 -166.31 -1.98 -10.37 16 9 N -0.30 -9.41 12.22 -165.32 -2.02 -11.43 16 10 C 0.19 5.39 7.47 88.31 0.66 6.05 16 11 C 0.13 3.45 5.44 85.56 0.47 3.92 16 12 N -0.52 -17.73 5.36 -886.02 -4.75 -22.48 16 13 C 0.04 1.45 5.98 86.45 0.52 1.96 16 14 C -0.11 -4.88 5.48 31.49 0.17 -4.71 16 15 C 0.23 11.02 1.05 -10.64 -0.01 11.01 16 16 O -0.59 -30.77 12.92 -148.98 -1.93 -32.70 16 17 C -0.56 -28.00 8.07 25.60 0.21 -27.79 16 18 H 0.06 3.00 7.57 -2.91 -0.02 2.98 16 19 C 0.03 1.43 5.09 84.66 0.43 1.86 16 20 N -0.91 -47.59 10.88 21.45 0.23 -47.36 16 21 Si 0.96 40.52 29.54 68.60 2.03 42.55 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 C 0.06 2.41 5.76 86.45 0.50 2.90 16 26 O -0.22 -5.43 10.65 -8.20 -0.09 -5.52 16 27 C -0.08 -0.91 9.70 22.48 0.22 -0.69 16 28 C -0.06 -0.45 9.74 22.49 0.22 -0.23 16 29 H 0.17 0.48 8.06 -2.91 -0.02 0.45 16 30 H 0.15 1.73 7.85 -2.91 -0.02 1.71 16 31 H 0.14 3.07 8.13 -2.38 -0.02 3.05 16 32 H 0.10 1.99 7.88 -2.39 -0.02 1.97 16 33 H 0.06 1.84 7.82 -2.39 -0.02 1.82 16 34 H 0.06 2.21 8.12 -2.39 -0.02 2.19 16 35 H 0.03 1.64 7.97 -2.38 -0.02 1.62 16 36 H 0.05 2.63 7.24 -2.39 -0.02 2.62 16 37 H 0.37 19.64 7.48 -74.05 -0.55 19.08 16 38 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 39 H 0.08 3.00 8.08 -2.38 -0.02 2.98 16 40 H 0.07 2.38 7.55 -2.39 -0.02 2.36 16 41 H 0.15 1.46 7.92 -2.91 -0.02 1.44 16 42 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 Total: -1.00 -65.34 369.47 -2.00 -67.34 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.53 Total: 24.84 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 5.62 Total: 3.49 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -8.16 Total: -100.00 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -2.01 Total: -38.21 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -65.34 -2.00 -67.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.242 kcal (2) G-P(sol) polarization free energy of solvation -65.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds