Wall clock time and date at job start Tue Mar 31 2020 23:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53878 * 112.99808 * 2 1 4 4 C 1.54727 * 101.14054 * 266.61295 * 3 2 1 5 5 C 1.51069 * 104.32935 * 334.55378 * 4 3 2 6 6 O 1.21274 * 124.67995 * 192.21724 * 5 4 3 7 7 N 1.35565 * 110.63630 * 12.25418 * 5 4 3 8 8 C 1.46663 * 139.48494 * 189.32887 * 7 5 4 9 9 H 1.08998 * 108.77696 * 268.02831 * 8 7 5 10 10 C 1.50693 * 108.78076 * 26.15396 * 8 7 5 11 11 O 1.21280 * 119.99967 * 0.02562 * 10 8 7 12 12 N 1.34775 * 119.99777 * 179.97438 * 10 8 7 13 13 C 1.47427 * 125.65208 * 359.69590 * 12 10 8 14 14 C 1.55130 * 104.72303 * 155.81577 * 13 12 10 15 15 C 1.55157 * 101.48424 * 37.29676 * 14 13 12 16 16 O 1.42896 * 110.72190 * 82.69703 * 15 14 13 17 17 C 1.50704 * 110.71745 * 205.96841 * 15 14 13 18 18 H 1.07996 * 119.99930 * 116.07188 * 17 15 14 19 19 C 1.37879 * 119.99848 * 296.07434 * 17 15 14 20 20 N 1.31512 * 120.00166 * 5.83918 * 19 17 15 21 21 Si 1.86803 * 119.99753 * 185.84652 * 19 17 15 22 22 H 1.48506 * 109.47264 * 84.90071 * 21 19 17 23 23 H 1.48494 * 109.47095 * 204.90087 * 21 19 17 24 24 H 1.48498 * 109.47195 * 324.90256 * 21 19 17 25 25 C 1.47029 * 125.64669 * 180.02562 * 12 10 8 26 26 C 1.53844 * 113.04291 * 147.09736 * 8 7 5 27 27 S 1.83134 * 112.58908 * 125.26474 * 2 1 3 28 28 H 1.09001 * 109.46724 * 179.32613 * 1 2 3 29 29 H 1.09000 * 109.47222 * 299.31548 * 1 2 3 30 30 H 1.08997 * 109.47687 * 59.32185 * 1 2 3 31 31 H 1.08995 * 111.09189 * 148.64557 * 3 2 1 32 32 H 1.09000 * 111.08869 * 24.57819 * 3 2 1 33 33 H 1.09005 * 110.45719 * 215.83928 * 4 3 2 34 34 H 1.09005 * 110.46153 * 93.26668 * 4 3 2 35 35 H 1.08999 * 110.36151 * 274.74543 * 13 12 10 36 36 H 1.09004 * 110.36205 * 37.06374 * 13 12 10 37 37 H 1.08998 * 111.18988 * 279.19169 * 14 13 12 38 38 H 1.08996 * 110.93505 * 155.28822 * 14 13 12 39 39 H 0.96706 * 114.00162 * 60.85728 * 16 15 14 40 40 H 0.97004 * 120.00095 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.88067 * 300.44469 * 25 12 10 42 42 H 1.09002 * 109.88034 * 61.60554 * 25 12 10 43 43 H 1.09000 * 110.55668 * 124.80569 * 26 8 7 44 44 H 1.08999 * 110.55582 * 247.50236 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1312 1.4165 0.0000 4 6 2.3305 1.6566 -1.5155 5 6 2.4639 0.2698 -2.0994 6 8 2.8413 0.0290 -3.2265 7 7 2.1025 -0.6684 -1.1900 8 6 2.1341 -2.1245 -1.0174 9 1 1.1981 -2.5421 -1.3881 10 6 3.2683 -2.6855 -1.8358 11 8 3.9698 -1.9427 -2.4893 12 7 3.5036 -4.0125 -1.8407 13 6 2.7373 -5.0239 -1.0902 14 6 2.9557 -6.3452 -1.8732 15 6 4.4369 -6.2027 -2.3125 16 8 5.3171 -6.6033 -1.2605 17 6 4.7011 -7.0004 -3.5635 18 1 4.9850 -6.4963 -4.4754 19 6 4.5803 -8.3737 -3.5438 20 7 4.1244 -8.9784 -2.4685 21 14 5.0644 -9.3755 -5.0443 22 1 6.5246 -9.6438 -5.0104 23 1 4.3244 -10.6629 -5.0397 24 1 4.7291 -8.6162 -6.2756 25 6 4.5714 -4.6906 -2.5902 26 6 2.3215 -2.5532 0.4482 27 16 2.2334 -0.9762 1.3806 28 1 -0.3633 -1.0276 -0.0121 29 1 -0.3634 0.5032 0.8961 30 1 -0.3634 0.5243 -0.8838 31 1 3.0838 1.4382 0.5291 32 1 1.4331 2.1388 0.4230 33 1 3.2378 2.2340 -1.6936 34 1 1.4644 2.1663 -1.9377 35 1 3.1218 -5.1142 -0.0743 36 1 1.6790 -4.7632 -1.0744 37 1 2.2955 -6.4041 -2.7385 38 1 2.8224 -7.2098 -1.2230 39 1 5.2108 -7.5252 -0.9883 40 1 4.0398 -9.9446 -2.4545 41 1 4.4556 -4.4979 -3.6568 42 1 5.5448 -4.3364 -2.2510 43 1 1.5202 -3.2250 0.7559 44 1 3.2926 -3.0286 0.5867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:32 Heat of formation + Delta-G solvation = -88.130236 kcal Electronic energy + Delta-G solvation = -28912.177951 eV Core-core repulsion = 24956.480760 eV Total energy + Delta-G solvation = -3955.697191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.93319 -39.40087 -37.33417 -36.95069 -34.59180 -34.06973 -32.26481 -30.60248 -30.41320 -29.40020 -28.26273 -25.69022 -25.64392 -24.45370 -22.32635 -21.77989 -20.33657 -19.49656 -18.54653 -17.78040 -17.29181 -16.76884 -16.41528 -15.93668 -15.47163 -15.08173 -14.86847 -14.79842 -14.39399 -14.16150 -13.99811 -13.84767 -13.60512 -13.21839 -13.14855 -13.06700 -12.77456 -12.52708 -12.35281 -12.17969 -12.04059 -11.59975 -11.48590 -11.41842 -11.30464 -11.29552 -10.92918 -10.68572 -10.54929 -10.51082 -10.17663 -9.86813 -9.56266 -9.41713 -8.87990 -8.73345 -8.28331 -8.10259 -8.04626 -6.33012 -4.39799 1.30997 1.79269 2.34216 2.65569 2.89409 3.19325 3.26006 3.28294 3.34991 3.88025 4.03927 4.24408 4.31432 4.34867 4.50922 4.64052 4.78204 4.94036 4.95952 5.07204 5.20652 5.24090 5.32337 5.33442 5.41511 5.51327 5.57291 5.64761 5.70329 5.78340 5.89171 5.91330 6.15082 6.38587 6.62922 6.82166 6.88397 7.03874 7.22698 7.28787 7.69208 7.96092 7.97533 8.11329 8.50865 8.62598 9.24560 9.32256 10.74216 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022897 B = 0.003151 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.554870 B = 8883.577463 C = 9538.446760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.171 3.829 3 C -0.109 4.109 4 C -0.140 4.140 5 C 0.541 3.459 6 O -0.478 6.478 7 N -0.609 5.609 8 C 0.142 3.858 9 H 0.104 0.896 10 C 0.511 3.489 11 O -0.510 6.510 12 N -0.607 5.607 13 C 0.089 3.911 14 C -0.133 4.133 15 C 0.248 3.752 16 O -0.584 6.584 17 C -0.536 4.536 18 H 0.064 0.936 19 C 0.074 3.926 20 N -0.895 5.895 21 Si 0.902 3.098 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.126 3.874 26 C -0.074 4.074 27 S -0.258 6.258 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.381 0.619 40 H 0.268 0.732 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.116 0.884 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.612 15.832 9.723 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 C -0.148 4.148 4 C -0.181 4.181 5 C 0.329 3.671 6 O -0.348 6.348 7 N -0.349 5.349 8 C 0.034 3.966 9 H 0.121 0.879 10 C 0.295 3.705 11 O -0.384 6.384 12 N -0.342 5.342 13 C -0.033 4.033 14 C -0.171 4.171 15 C 0.208 3.792 16 O -0.393 6.393 17 C -0.574 4.574 18 H 0.082 0.918 19 C -0.129 4.129 20 N -0.534 5.534 21 Si 0.729 3.271 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.198 1.198 25 C 0.005 3.995 26 C -0.223 4.223 27 S -0.029 6.029 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.231 0.769 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.134 0.866 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.471 16.811 9.736 21.613 hybrid contribution -0.365 -1.852 -1.683 2.530 sum -9.836 14.959 8.053 19.630 Atomic orbital electron populations 1.22112 0.90555 1.03718 1.03369 1.24213 0.96689 0.95884 0.85748 1.22596 1.02962 0.92847 0.96393 1.22346 1.05736 0.94729 0.95277 1.20896 0.75946 0.85863 0.84436 1.90796 1.42802 1.83201 1.17961 1.49368 1.63117 1.03606 1.18775 1.21020 1.00066 0.80451 0.95022 0.87860 1.19839 0.85925 0.81633 0.83092 1.90830 1.48232 1.57114 1.42247 1.48583 1.33445 1.04781 1.47371 1.22700 0.94181 0.90318 0.96138 1.23357 1.00623 0.93737 0.99422 1.19439 0.85479 0.87670 0.86637 1.86146 1.63166 1.33756 1.56185 1.21495 1.47885 0.91850 0.96179 0.91751 1.24968 0.93426 0.97724 0.96755 1.69724 1.44920 1.10196 1.28575 0.86440 0.78870 0.79112 0.82635 1.20258 1.21104 1.19771 1.22079 0.89059 0.92910 0.95460 1.24533 1.08250 0.97431 0.92089 1.87909 1.83932 1.09137 1.21936 0.91286 0.89976 0.90981 0.88454 0.88405 0.87122 0.87395 0.91632 0.92314 0.91311 0.89196 0.76889 0.92212 0.90924 0.92076 0.86601 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.23 37.16 0.34 -0.62 16 2 C 0.17 1.65 0.96 -66.65 -0.06 1.59 16 3 C -0.11 -0.83 6.35 -25.37 -0.16 -0.99 16 4 C -0.14 -1.25 6.83 -26.79 -0.18 -1.44 16 5 C 0.54 8.18 7.56 -10.45 -0.08 8.10 16 6 O -0.48 -9.77 15.68 -17.74 -0.28 -10.05 16 7 N -0.61 -8.32 3.04 -153.18 -0.47 -8.79 16 8 C 0.14 2.00 2.89 -68.56 -0.20 1.80 16 9 H 0.10 1.29 7.91 -51.93 -0.41 0.88 16 10 C 0.51 9.76 7.04 -10.99 -0.08 9.69 16 11 O -0.51 -11.89 13.73 -17.75 -0.24 -12.13 16 12 N -0.61 -11.72 3.24 -170.37 -0.55 -12.27 16 13 C 0.09 1.48 5.31 -2.41 -0.01 1.47 16 14 C -0.13 -2.73 5.49 -24.46 -0.13 -2.86 16 15 C 0.25 5.84 0.84 -89.94 -0.08 5.76 16 16 O -0.58 -14.18 13.06 -35.23 -0.46 -14.64 16 17 C -0.54 -13.91 8.21 -34.44 -0.28 -14.19 16 18 H 0.06 1.70 7.56 -52.49 -0.40 1.30 16 19 C 0.07 1.88 5.28 -17.82 -0.09 1.78 16 20 N -0.90 -22.44 10.72 55.43 0.59 -21.84 16 21 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C 0.13 2.85 6.22 -3.06 -0.02 2.84 16 26 C -0.07 -0.86 5.41 37.60 0.20 -0.65 16 27 S -0.26 -2.85 22.21 -107.50 -2.39 -5.24 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.81 7.81 -51.93 -0.41 0.41 16 32 H 0.10 0.45 7.99 -51.93 -0.41 0.04 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.02 7.53 -51.93 -0.39 0.63 16 36 H 0.06 0.79 7.37 -51.93 -0.38 0.40 16 37 H 0.07 1.48 8.04 -51.93 -0.42 1.06 16 38 H 0.09 1.91 7.53 -51.93 -0.39 1.51 16 39 H 0.38 9.20 7.52 45.56 0.34 9.54 16 40 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 41 H 0.07 1.72 7.64 -51.93 -0.40 1.32 16 42 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 43 H 0.12 1.03 8.13 -51.93 -0.42 0.61 16 44 H 0.12 1.56 6.82 -51.93 -0.35 1.20 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -32.68 359.11 -9.95 -42.63 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.71 Total: 9.47 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: -0.84 Total: 12.28 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.42 Total: -42.90 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.98 Total: -36.82 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -2.39 Total: -5.24 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.68 -9.95 -42.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.500 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds