Wall clock time and date at job start Tue Mar 31 2020 23:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53878 * 112.99808 * 2 1 4 4 C 1.54727 * 101.14054 * 266.61295 * 3 2 1 5 5 C 1.51069 * 104.32935 * 334.55378 * 4 3 2 6 6 O 1.21274 * 124.67995 * 192.21724 * 5 4 3 7 7 N 1.35565 * 110.63630 * 12.25418 * 5 4 3 8 8 C 1.46663 * 139.48494 * 189.32887 * 7 5 4 9 9 H 1.08998 * 108.77696 * 268.02831 * 8 7 5 10 10 C 1.50693 * 108.78076 * 26.15396 * 8 7 5 11 11 O 1.21280 * 119.99967 * 0.02562 * 10 8 7 12 12 N 1.34775 * 119.99777 * 179.97438 * 10 8 7 13 13 C 1.47427 * 125.65208 * 359.69590 * 12 10 8 14 14 C 1.55130 * 104.72303 * 155.81577 * 13 12 10 15 15 C 1.55157 * 101.48424 * 37.29676 * 14 13 12 16 16 O 1.42896 * 110.72190 * 82.69703 * 15 14 13 17 17 C 1.50704 * 110.71745 * 205.96841 * 15 14 13 18 18 H 1.07996 * 119.99930 * 116.07188 * 17 15 14 19 19 C 1.37879 * 119.99848 * 296.07434 * 17 15 14 20 20 N 1.31512 * 120.00166 * 5.83918 * 19 17 15 21 21 Si 1.86803 * 119.99753 * 185.84652 * 19 17 15 22 22 H 1.48506 * 109.47264 * 84.90071 * 21 19 17 23 23 H 1.48494 * 109.47095 * 204.90087 * 21 19 17 24 24 H 1.48498 * 109.47195 * 324.90256 * 21 19 17 25 25 C 1.47029 * 125.64669 * 180.02562 * 12 10 8 26 26 C 1.53844 * 113.04291 * 147.09736 * 8 7 5 27 27 S 1.83134 * 112.58908 * 125.26474 * 2 1 3 28 28 H 1.09001 * 109.46724 * 179.32613 * 1 2 3 29 29 H 1.09000 * 109.47222 * 299.31548 * 1 2 3 30 30 H 1.08997 * 109.47687 * 59.32185 * 1 2 3 31 31 H 1.08995 * 111.09189 * 148.64557 * 3 2 1 32 32 H 1.09000 * 111.08869 * 24.57819 * 3 2 1 33 33 H 1.09005 * 110.45719 * 215.83928 * 4 3 2 34 34 H 1.09005 * 110.46153 * 93.26668 * 4 3 2 35 35 H 1.08999 * 110.36151 * 274.74543 * 13 12 10 36 36 H 1.09004 * 110.36205 * 37.06374 * 13 12 10 37 37 H 1.08998 * 111.18988 * 279.19169 * 14 13 12 38 38 H 1.08996 * 110.93505 * 155.28822 * 14 13 12 39 39 H 0.96706 * 114.00162 * 60.85728 * 16 15 14 40 40 H 0.97004 * 120.00095 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.88067 * 300.44469 * 25 12 10 42 42 H 1.09002 * 109.88034 * 61.60554 * 25 12 10 43 43 H 1.09000 * 110.55668 * 124.80569 * 26 8 7 44 44 H 1.08999 * 110.55582 * 247.50236 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1312 1.4165 0.0000 4 6 2.3305 1.6566 -1.5155 5 6 2.4639 0.2698 -2.0994 6 8 2.8413 0.0290 -3.2265 7 7 2.1025 -0.6684 -1.1900 8 6 2.1341 -2.1245 -1.0174 9 1 1.1981 -2.5421 -1.3881 10 6 3.2683 -2.6855 -1.8358 11 8 3.9698 -1.9427 -2.4893 12 7 3.5036 -4.0125 -1.8407 13 6 2.7373 -5.0239 -1.0902 14 6 2.9557 -6.3452 -1.8732 15 6 4.4369 -6.2027 -2.3125 16 8 5.3171 -6.6033 -1.2605 17 6 4.7011 -7.0004 -3.5635 18 1 4.9850 -6.4963 -4.4754 19 6 4.5803 -8.3737 -3.5438 20 7 4.1244 -8.9784 -2.4685 21 14 5.0644 -9.3755 -5.0443 22 1 6.5246 -9.6438 -5.0104 23 1 4.3244 -10.6629 -5.0397 24 1 4.7291 -8.6162 -6.2756 25 6 4.5714 -4.6906 -2.5902 26 6 2.3215 -2.5532 0.4482 27 16 2.2334 -0.9762 1.3806 28 1 -0.3633 -1.0276 -0.0121 29 1 -0.3634 0.5032 0.8961 30 1 -0.3634 0.5243 -0.8838 31 1 3.0838 1.4382 0.5291 32 1 1.4331 2.1388 0.4230 33 1 3.2378 2.2340 -1.6936 34 1 1.4644 2.1663 -1.9377 35 1 3.1218 -5.1142 -0.0743 36 1 1.6790 -4.7632 -1.0744 37 1 2.2955 -6.4041 -2.7385 38 1 2.8224 -7.2098 -1.2230 39 1 5.2108 -7.5252 -0.9883 40 1 4.0398 -9.9446 -2.4545 41 1 4.4556 -4.4979 -3.6568 42 1 5.5448 -4.3364 -2.2510 43 1 1.5202 -3.2250 0.7559 44 1 3.2926 -3.0286 0.5867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:31 Heat of formation + Delta-G solvation = -111.356150 kcal Electronic energy + Delta-G solvation = -28913.185102 eV Core-core repulsion = 24956.480760 eV Total energy + Delta-G solvation = -3956.704342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.04841 -40.83010 -39.01816 -38.11156 -36.26660 -35.20622 -34.24617 -31.76517 -31.31658 -30.74070 -29.89173 -27.32703 -26.37901 -25.81345 -23.80566 -22.68236 -21.76103 -20.99152 -19.86139 -19.25561 -18.71508 -18.15069 -17.44094 -17.13735 -16.94274 -16.74491 -16.36038 -16.05274 -15.71954 -15.31717 -15.19434 -14.90818 -14.83157 -14.69120 -14.16552 -14.05290 -13.90136 -13.73054 -13.52499 -13.41981 -13.28948 -13.27327 -13.04337 -12.88823 -12.72942 -12.47231 -12.30723 -12.17801 -12.01219 -11.98174 -11.41319 -11.30287 -11.12768 -10.83308 -10.70375 -10.17855 -9.98604 -9.72692 -8.87436 -8.28587 -6.41891 0.48525 0.92665 1.25040 1.38321 1.41847 1.44861 1.49532 1.64740 1.93127 2.36591 2.95560 2.97475 3.22029 3.24419 3.53354 3.69864 3.78498 3.79928 3.93289 3.94715 4.17777 4.25303 4.32980 4.37119 4.38730 4.50666 4.54529 4.62694 4.74386 4.79622 4.84137 4.95484 5.01344 5.05487 5.10759 5.17320 5.26380 5.42071 5.52188 5.72833 6.00218 6.04310 6.44794 6.59808 6.91623 7.10920 7.28258 7.34904 8.76952 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022897 B = 0.003151 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.554870 B = 8883.577463 C = 9538.446760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.173 3.827 3 C -0.102 4.102 4 C -0.128 4.128 5 C 0.524 3.476 6 O -0.549 6.549 7 N -0.621 5.621 8 C 0.147 3.853 9 H 0.127 0.873 10 C 0.502 3.498 11 O -0.560 6.560 12 N -0.608 5.608 13 C 0.098 3.902 14 C -0.123 4.123 15 C 0.239 3.761 16 O -0.590 6.590 17 C -0.569 4.569 18 H 0.045 0.955 19 C 0.043 3.957 20 N -0.899 5.899 21 Si 0.954 3.046 22 H -0.278 1.278 23 H -0.273 1.273 24 H -0.279 1.279 25 C 0.133 3.867 26 C -0.071 4.071 27 S -0.266 6.266 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.380 0.620 40 H 0.273 0.727 41 H 0.049 0.951 42 H 0.039 0.961 43 H 0.152 0.848 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.372 16.843 11.948 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 C -0.140 4.140 4 C -0.168 4.168 5 C 0.314 3.686 6 O -0.424 6.424 7 N -0.360 5.360 8 C 0.040 3.960 9 H 0.144 0.856 10 C 0.289 3.711 11 O -0.438 6.438 12 N -0.342 5.342 13 C -0.023 4.023 14 C -0.162 4.162 15 C 0.199 3.801 16 O -0.398 6.398 17 C -0.607 4.607 18 H 0.063 0.937 19 C -0.159 4.159 20 N -0.537 5.537 21 Si 0.780 3.220 22 H -0.204 1.204 23 H -0.198 1.198 24 H -0.204 1.204 25 C 0.010 3.990 26 C -0.220 4.220 27 S -0.037 6.037 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.159 0.841 33 H 0.134 0.866 34 H 0.159 0.841 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.230 0.770 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.170 0.830 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.274 17.815 12.041 24.758 hybrid contribution 0.554 -2.167 -2.379 3.266 sum -11.720 15.647 9.661 21.807 Atomic orbital electron populations 1.22162 0.87866 1.04288 1.05061 1.24668 0.98362 0.96103 0.83048 1.22712 1.03608 0.92530 0.95186 1.22424 1.07458 0.90994 0.95954 1.22135 0.74393 0.88221 0.83811 1.90751 1.45973 1.84616 1.21010 1.49587 1.62801 1.03570 1.20006 1.21139 0.98071 0.81204 0.95621 0.85597 1.20882 0.86622 0.80904 0.82679 1.90814 1.50364 1.58201 1.44373 1.48625 1.32781 1.05590 1.47173 1.22797 0.96518 0.87300 0.95662 1.23118 0.97865 0.95891 0.99292 1.19506 0.87281 0.87452 0.85885 1.86130 1.63836 1.33627 1.56257 1.21678 1.49450 0.92913 0.96620 0.93714 1.25496 0.93199 0.98138 0.99066 1.69756 1.44229 1.10560 1.29172 0.85635 0.78436 0.78108 0.79787 1.20376 1.19814 1.20390 1.21734 0.89494 0.93148 0.94600 1.24544 1.08675 0.98466 0.90340 1.87965 1.84577 1.09006 1.22120 0.91392 0.87471 0.89980 0.89369 0.84120 0.86616 0.84120 0.89821 0.87790 0.92601 0.89555 0.77010 0.91759 0.93284 0.94289 0.82956 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.23 71.98 0.66 -0.59 16 2 C 0.17 2.77 0.96 45.00 0.04 2.82 16 3 C -0.10 -1.17 6.35 31.48 0.20 -0.97 16 4 C -0.13 -1.99 6.83 30.55 0.21 -1.78 16 5 C 0.52 15.72 7.56 87.65 0.66 16.38 16 6 O -0.55 -23.49 15.68 19.27 0.30 -23.19 16 7 N -0.62 -16.10 3.04 -756.48 -2.30 -18.41 16 8 C 0.15 3.92 2.89 44.50 0.13 4.05 16 9 H 0.13 2.79 7.91 -2.39 -0.02 2.77 16 10 C 0.50 19.55 7.04 87.65 0.62 20.16 16 11 O -0.56 -27.56 13.73 19.25 0.26 -27.30 16 12 N -0.61 -23.80 3.24 -811.33 -2.63 -26.43 16 13 C 0.10 3.11 5.31 86.93 0.46 3.57 16 14 C -0.12 -5.02 5.49 32.06 0.18 -4.85 16 15 C 0.24 11.58 0.84 -10.35 -0.01 11.57 16 16 O -0.59 -29.27 13.06 -148.98 -1.95 -31.22 16 17 C -0.57 -30.59 8.21 25.60 0.21 -30.38 16 18 H 0.04 2.50 7.56 -2.91 -0.02 2.48 16 19 C 0.04 2.21 5.28 84.66 0.45 2.66 16 20 N -0.90 -44.84 10.72 21.45 0.23 -44.61 16 21 Si 0.95 41.73 29.54 68.60 2.03 43.76 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 C 0.13 6.37 6.22 86.73 0.54 6.91 16 26 C -0.07 -1.47 5.41 72.27 0.39 -1.08 16 27 S -0.27 -5.09 22.21 -56.49 -1.25 -6.35 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 1.22 7.81 -2.39 -0.02 1.20 16 32 H 0.14 0.48 7.99 -2.39 -0.02 0.46 16 33 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.14 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.08 2.40 7.53 -2.39 -0.02 2.38 16 36 H 0.10 2.39 7.37 -2.38 -0.02 2.37 16 37 H 0.06 2.40 8.04 -2.39 -0.02 2.38 16 38 H 0.09 3.59 7.53 -2.39 -0.02 3.57 16 39 H 0.38 18.59 7.52 -74.05 -0.56 18.04 16 40 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 41 H 0.05 2.52 7.64 -2.39 -0.02 2.50 16 42 H 0.04 1.98 8.07 -2.39 -0.02 1.96 16 43 H 0.15 2.03 8.13 -2.39 -0.02 2.01 16 44 H 0.10 2.46 6.82 -2.39 -0.02 2.45 16 Total: -1.00 -77.41 359.11 -0.10 -77.51 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.47 Total: 27.75 kcal Atomic # 6 Polarization: 23.73 SS G_CDS: 4.74 Total: 28.47 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -4.70 Total: -89.44 kcal Atomic # 8 Polarization: -80.32 SS G_CDS: -1.38 Total: -81.70 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: -5.09 SS G_CDS: -1.25 Total: -6.35 kcal Total: -77.41 -0.10 -77.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.845 kcal (2) G-P(sol) polarization free energy of solvation -77.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds