Wall clock time and date at job start Tue Mar 31 2020 22:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86795 * 119.99889 * 2 1 4 4 H 1.48502 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47140 * 299.99953 * 3 2 1 6 6 H 1.48507 * 109.47138 * 60.00080 * 3 2 1 7 7 C 1.39949 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99743 * 168.58514 * 7 2 1 9 9 C 1.41399 * 119.99970 * 348.59003 * 7 2 1 10 10 C 1.40732 * 120.24209 * 331.68144 * 9 7 2 11 11 C 1.37597 * 119.74264 * 180.02562 * 10 9 7 12 12 C 1.38651 * 120.25420 * 359.97438 * 11 10 9 13 13 C 1.38622 * 120.49518 * 0.02562 * 12 11 10 14 14 C 1.37635 * 120.25075 * 359.97438 * 13 12 11 15 15 S 1.76193 * 120.12987 * 179.97438 * 14 13 12 16 16 O 1.42106 * 106.40345 * 358.33019 * 15 14 13 17 17 O 1.42106 * 106.40314 * 131.24774 * 15 14 13 18 18 N 1.65597 * 107.22167 * 244.79127 * 15 14 13 19 19 C 1.46495 * 120.00196 * 67.43115 * 18 15 14 20 20 C 1.53004 * 109.47260 * 163.65393 * 19 18 15 21 21 H 1.08998 * 109.82496 * 60.91651 * 20 19 18 22 22 C 1.51044 * 109.83904 * 181.88824 * 20 19 18 23 23 N 1.47396 * 111.56081 * 213.53566 * 22 20 19 24 24 C 1.48027 * 113.47423 * 319.08828 * 23 22 20 25 25 C 1.50988 * 113.13155 * 318.17921 * 24 23 22 26 26 C 1.54719 * 109.07797 * 92.03969 * 25 24 23 27 27 O 1.36608 * 110.79132 * 286.65318 * 26 25 24 28 28 H 0.96992 * 119.99904 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.12870 * 0.04209 * 10 9 7 30 30 H 1.08010 * 119.87413 * 179.71992 * 11 10 9 31 31 H 1.07994 * 119.75478 * 179.97438 * 12 11 10 32 32 H 1.07998 * 119.87332 * 179.97438 * 13 12 11 33 33 H 0.97003 * 119.99908 * 247.43481 * 18 15 14 34 34 H 1.09002 * 109.47491 * 283.65827 * 19 18 15 35 35 H 1.09003 * 109.46758 * 43.65789 * 19 18 15 36 36 H 1.08998 * 109.06507 * 334.07272 * 22 20 19 37 37 H 1.09001 * 109.06300 * 93.00078 * 22 20 19 38 38 H 1.00895 * 111.00370 * 193.26890 * 23 22 20 39 39 H 1.08998 * 108.75358 * 197.23426 * 24 23 22 40 40 H 1.09007 * 108.75185 * 79.11832 * 24 23 22 41 41 H 1.08999 * 109.53401 * 332.16036 * 25 24 23 42 42 H 1.08997 * 109.60284 * 211.96223 * 25 24 23 43 43 H 1.08999 * 109.20692 * 166.31587 * 26 25 24 44 44 H 1.08997 * 109.17447 * 46.97226 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3964 1.2126 7 6 2.0081 -1.2120 0.0005 8 1 3.0720 -1.2212 -0.1846 9 6 1.3221 -2.4243 0.2433 10 6 0.1592 -2.4343 1.0360 11 6 -0.4999 -3.6200 1.2661 12 6 -0.0230 -4.8018 0.7199 13 6 1.1214 -4.8037 -0.0623 14 6 1.7970 -3.6295 -0.3057 15 16 3.2516 -3.6358 -1.2999 16 8 3.4847 -4.9901 -1.6616 17 8 3.0910 -2.5936 -2.2526 18 7 4.5134 -3.1883 -0.3254 19 6 4.9502 -4.0710 0.7591 20 6 6.3420 -3.6470 1.2326 21 1 6.3087 -2.6249 1.6097 22 6 6.8201 -4.5805 2.3196 23 7 7.6515 -3.8757 3.3119 24 6 8.5903 -2.9024 2.7098 25 6 9.2583 -3.4188 1.4581 26 6 8.4208 -2.9974 0.2273 27 8 7.2739 -3.7350 0.1456 28 1 -0.4849 0.8400 0.0004 29 1 -0.2145 -1.5148 1.4618 30 1 -1.3900 -3.6308 1.8778 31 1 -0.5464 -5.7279 0.9061 32 1 1.4843 -5.7302 -0.4824 33 1 4.9633 -2.3416 -0.4726 34 1 4.2473 -4.0020 1.5893 35 1 4.9867 -5.0990 0.3984 36 1 5.9556 -5.0135 2.8227 37 1 7.4061 -5.3814 1.8687 38 1 8.1398 -4.5300 3.9046 39 1 9.3596 -2.6584 3.4424 40 1 8.0423 -1.9925 2.4646 41 1 9.3217 -4.5061 1.5009 42 1 10.2606 -2.9981 1.3784 43 1 9.0104 -3.1496 -0.6767 44 1 8.1632 -1.9419 0.3140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601341289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:27 Heat of formation + Delta-G solvation = -97.833615 kcal Electronic energy + Delta-G solvation = -28665.208405 eV Core-core repulsion = 24709.090444 eV Total energy + Delta-G solvation = -3956.117961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.10046 -37.57711 -36.19425 -35.63477 -35.16262 -34.77494 -33.87582 -32.18594 -30.21329 -29.53916 -28.68326 -26.33422 -25.53903 -24.01763 -21.82290 -21.63432 -21.12049 -20.55085 -18.52110 -17.70731 -17.13466 -16.94536 -16.66427 -16.05554 -15.86421 -15.41773 -15.38915 -14.96202 -14.39082 -14.34206 -14.01611 -13.32987 -13.26107 -13.11583 -13.03422 -12.88417 -12.75649 -12.53765 -11.95841 -11.89395 -11.64654 -11.48710 -11.26751 -11.15942 -11.14213 -11.05891 -10.97311 -10.84235 -10.64203 -10.48090 -10.43870 -9.88875 -9.62010 -9.45357 -9.41807 -8.73884 -8.62555 -8.01980 -7.59101 -7.02170 -4.75378 1.57354 2.35138 2.73175 2.97023 3.02642 3.10983 3.55844 3.77423 3.86047 4.05862 4.41940 4.51760 4.71400 4.75025 4.82000 4.90427 4.96692 5.18258 5.25467 5.31587 5.46204 5.55146 5.60530 5.65306 5.66367 5.73421 5.90209 5.94578 5.97712 6.06688 6.25543 6.33809 6.43638 6.69747 6.78690 6.96766 7.09788 7.10117 7.31850 7.50235 7.51612 7.58740 7.70430 7.82375 7.90465 8.30033 8.51068 8.66279 9.90648 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010839 B = 0.004494 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.708764 B = 6228.868247 C = 7197.923304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.080 3.920 3 Si 0.916 3.084 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.445 4.445 8 H 0.087 0.913 9 C 0.186 3.814 10 C -0.158 4.158 11 C -0.077 4.077 12 C -0.250 4.250 13 C -0.003 4.003 14 C -0.776 4.776 15 S 2.703 3.297 16 O -0.997 6.997 17 O -0.965 6.965 18 N -1.116 6.116 19 C 0.136 3.864 20 C 0.088 3.912 21 H 0.080 0.920 22 C 0.033 3.967 23 N -0.694 5.694 24 C 0.051 3.949 25 C -0.197 4.197 26 C 0.074 3.926 27 O -0.373 6.373 28 H 0.287 0.713 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.412 0.588 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.343 0.657 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.527 -2.704 6.536 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.141 4.141 3 Si 0.739 3.261 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.474 4.474 8 H 0.104 0.896 9 C 0.182 3.818 10 C -0.178 4.178 11 C -0.096 4.096 12 C -0.271 4.271 13 C -0.023 4.023 14 C -0.872 4.872 15 S 2.800 3.200 16 O -0.987 6.987 17 O -0.955 6.955 18 N -0.872 5.872 19 C 0.008 3.992 20 C 0.030 3.970 21 H 0.098 0.902 22 C -0.096 4.096 23 N -0.325 5.325 24 C -0.078 4.078 25 C -0.237 4.237 26 C -0.004 4.004 27 O -0.291 6.291 28 H 0.098 0.902 29 H 0.143 0.857 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.245 0.755 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.161 0.839 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.822 -2.576 5.596 14.225 hybrid contribution 0.773 0.774 0.528 1.215 sum 13.595 -1.802 6.124 15.019 Atomic orbital electron populations 1.69784 1.07751 1.29993 1.32460 1.25948 0.94889 1.01837 0.91424 0.86115 0.81098 0.80026 0.78831 1.17868 1.19325 1.19474 1.19868 0.96662 0.90798 1.40029 0.89550 1.17011 0.90278 0.89712 0.84847 1.21525 0.98158 0.96830 1.01290 1.20905 0.97502 0.93510 0.97642 1.20494 1.00996 0.96953 1.08614 1.20259 0.93604 0.95125 0.93330 1.29929 1.25658 1.00709 1.30857 1.01026 0.73113 0.72383 0.73460 1.93443 1.85877 1.37017 1.82377 1.93542 1.85934 1.57395 1.58631 1.55512 1.51732 1.31262 1.48698 1.21162 0.92311 0.94784 0.90911 1.22218 0.88797 0.99994 0.86029 0.90213 1.22304 0.98154 0.96025 0.93125 1.60477 1.26872 1.22240 1.22917 1.21908 0.94535 0.96363 0.95013 1.22974 1.00739 1.02400 0.97557 1.21847 0.86214 0.94647 0.97741 1.86527 1.29768 1.68237 1.44602 0.90204 0.85683 0.88847 0.88753 0.87403 0.75512 0.89892 0.89816 0.89185 0.93346 0.83912 0.91175 0.91008 0.91103 0.90573 0.88973 0.94143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.05 10.85 55.55 0.60 -18.44 16 2 C 0.08 1.92 5.24 -17.34 -0.09 1.83 16 3 Si 0.92 17.96 29.57 -169.99 -5.03 12.94 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.45 -11.09 7.66 -37.74 -0.29 -11.37 16 8 H 0.09 2.01 5.66 -52.49 -0.30 1.71 16 9 C 0.19 4.71 5.55 -106.82 -0.59 4.12 16 10 C -0.16 -3.89 8.66 -38.87 -0.34 -4.23 16 11 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 12 C -0.25 -5.44 10.05 -39.29 -0.39 -5.84 16 13 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 14 C -0.78 -18.50 5.96 -38.87 -0.23 -18.74 16 15 S 2.70 59.78 4.97 -107.50 -0.53 59.25 16 16 O -1.00 -22.99 16.34 -57.17 -0.93 -23.92 16 17 O -0.96 -24.32 16.59 -57.17 -0.95 -25.27 16 18 N -1.12 -19.85 5.03 -10.61 -0.05 -19.91 16 19 C 0.14 2.05 5.73 -4.04 -0.02 2.02 16 20 C 0.09 1.13 2.37 -27.71 -0.07 1.06 16 21 H 0.08 1.03 6.78 -51.93 -0.35 0.68 16 22 C 0.03 0.36 5.69 -4.54 -0.03 0.33 16 23 N -0.69 -6.71 6.95 -114.74 -0.80 -7.51 16 24 C 0.05 0.45 5.99 -4.21 -0.03 0.43 16 25 C -0.20 -1.69 5.70 -26.84 -0.15 -1.85 16 26 C 0.07 0.77 6.43 38.06 0.24 1.02 16 27 O -0.37 -4.99 9.49 -21.71 -0.21 -5.19 16 28 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 29 H 0.13 3.10 6.21 -52.48 -0.33 2.78 16 30 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.11 2.25 7.33 -52.49 -0.38 1.87 16 33 H 0.41 6.78 8.30 -34.47 -0.29 6.50 16 34 H 0.08 1.20 8.13 -51.93 -0.42 0.77 16 35 H 0.08 1.27 7.67 -51.93 -0.40 0.87 16 36 H 0.09 0.92 7.74 -51.93 -0.40 0.52 16 37 H 0.05 0.52 7.25 -51.93 -0.38 0.14 16 38 H 0.34 2.68 8.91 -39.29 -0.35 2.33 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.72 6.55 -51.93 -0.34 0.38 16 41 H 0.07 0.65 7.24 -51.93 -0.38 0.28 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.41 7.72 -51.93 -0.40 0.01 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -31.02 360.04 -11.19 -42.21 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -5.96 Total: 14.20 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: -2.76 Total: -33.78 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.25 Total: -45.86 kcal Atomic # 8 Polarization: -52.30 SS G_CDS: -2.09 Total: -54.39 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: 59.78 SS G_CDS: -0.53 Total: 59.25 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.02 -11.19 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601341289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.624 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds