Wall clock time and date at job start Tue Mar 31 2020 22:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86795 * 119.99889 * 2 1 4 4 H 1.48502 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47140 * 299.99953 * 3 2 1 6 6 H 1.48507 * 109.47138 * 60.00080 * 3 2 1 7 7 C 1.39949 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99743 * 168.58514 * 7 2 1 9 9 C 1.41399 * 119.99970 * 348.59003 * 7 2 1 10 10 C 1.40732 * 120.24209 * 331.68144 * 9 7 2 11 11 C 1.37597 * 119.74264 * 180.02562 * 10 9 7 12 12 C 1.38651 * 120.25420 * 359.97438 * 11 10 9 13 13 C 1.38622 * 120.49518 * 0.02562 * 12 11 10 14 14 C 1.37635 * 120.25075 * 359.97438 * 13 12 11 15 15 S 1.76193 * 120.12987 * 179.97438 * 14 13 12 16 16 O 1.42106 * 106.40345 * 358.33019 * 15 14 13 17 17 O 1.42106 * 106.40314 * 131.24774 * 15 14 13 18 18 N 1.65597 * 107.22167 * 244.79127 * 15 14 13 19 19 C 1.46495 * 120.00196 * 67.43115 * 18 15 14 20 20 C 1.53004 * 109.47260 * 163.65393 * 19 18 15 21 21 H 1.08998 * 109.82496 * 60.91651 * 20 19 18 22 22 C 1.51044 * 109.83904 * 181.88824 * 20 19 18 23 23 N 1.47396 * 111.56081 * 213.53566 * 22 20 19 24 24 C 1.48027 * 113.47423 * 319.08828 * 23 22 20 25 25 C 1.50988 * 113.13155 * 318.17921 * 24 23 22 26 26 C 1.54719 * 109.07797 * 92.03969 * 25 24 23 27 27 O 1.36608 * 110.79132 * 286.65318 * 26 25 24 28 28 H 0.96992 * 119.99904 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.12870 * 0.04209 * 10 9 7 30 30 H 1.08010 * 119.87413 * 179.71992 * 11 10 9 31 31 H 1.07994 * 119.75478 * 179.97438 * 12 11 10 32 32 H 1.07998 * 119.87332 * 179.97438 * 13 12 11 33 33 H 0.97003 * 119.99908 * 247.43481 * 18 15 14 34 34 H 1.09002 * 109.47491 * 283.65827 * 19 18 15 35 35 H 1.09003 * 109.46758 * 43.65789 * 19 18 15 36 36 H 1.08998 * 109.06507 * 334.07272 * 22 20 19 37 37 H 1.09001 * 109.06300 * 93.00078 * 22 20 19 38 38 H 1.00895 * 111.00370 * 193.26890 * 23 22 20 39 39 H 1.08998 * 108.75358 * 197.23426 * 24 23 22 40 40 H 1.09007 * 108.75185 * 79.11832 * 24 23 22 41 41 H 1.08999 * 109.53401 * 332.16036 * 25 24 23 42 42 H 1.08997 * 109.60284 * 211.96223 * 25 24 23 43 43 H 1.08999 * 109.20692 * 166.31587 * 26 25 24 44 44 H 1.08997 * 109.17447 * 46.97226 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3964 1.2126 7 6 2.0081 -1.2120 0.0005 8 1 3.0720 -1.2212 -0.1846 9 6 1.3221 -2.4243 0.2433 10 6 0.1592 -2.4343 1.0360 11 6 -0.4999 -3.6200 1.2661 12 6 -0.0230 -4.8018 0.7199 13 6 1.1214 -4.8037 -0.0623 14 6 1.7970 -3.6295 -0.3057 15 16 3.2516 -3.6358 -1.2999 16 8 3.4847 -4.9901 -1.6616 17 8 3.0910 -2.5936 -2.2526 18 7 4.5134 -3.1883 -0.3254 19 6 4.9502 -4.0710 0.7591 20 6 6.3420 -3.6470 1.2326 21 1 6.3087 -2.6249 1.6097 22 6 6.8201 -4.5805 2.3196 23 7 7.6515 -3.8757 3.3119 24 6 8.5903 -2.9024 2.7098 25 6 9.2583 -3.4188 1.4581 26 6 8.4208 -2.9974 0.2273 27 8 7.2739 -3.7350 0.1456 28 1 -0.4849 0.8400 0.0004 29 1 -0.2145 -1.5148 1.4618 30 1 -1.3900 -3.6308 1.8778 31 1 -0.5464 -5.7279 0.9061 32 1 1.4843 -5.7302 -0.4824 33 1 4.9633 -2.3416 -0.4726 34 1 4.2473 -4.0020 1.5893 35 1 4.9867 -5.0990 0.3984 36 1 5.9556 -5.0135 2.8227 37 1 7.4061 -5.3814 1.8687 38 1 8.1398 -4.5300 3.9046 39 1 9.3596 -2.6584 3.4424 40 1 8.0423 -1.9925 2.4646 41 1 9.3217 -4.5061 1.5009 42 1 10.2606 -2.9981 1.3784 43 1 9.0104 -3.1496 -0.6767 44 1 8.1632 -1.9419 0.3140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601341289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:26 Heat of formation + Delta-G solvation = -121.197029 kcal Electronic energy + Delta-G solvation = -28666.221518 eV Core-core repulsion = 24709.090444 eV Total energy + Delta-G solvation = -3957.131074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.00396 -39.36300 -38.03111 -36.65202 -36.53283 -36.35222 -35.64728 -33.16949 -32.00362 -31.33387 -29.67530 -27.35458 -27.15088 -25.10604 -23.41926 -22.93258 -22.67406 -21.44266 -20.16066 -19.50402 -18.51025 -18.19668 -17.87533 -17.47086 -17.10498 -16.95162 -16.42483 -16.21461 -16.01669 -15.53630 -15.21139 -15.04815 -14.91790 -14.47376 -14.46067 -14.02533 -13.68501 -13.65186 -13.45440 -13.24914 -12.99627 -12.93520 -12.92286 -12.83115 -12.79731 -12.68851 -12.50131 -12.10702 -11.97951 -11.96339 -11.63659 -11.33339 -11.19367 -11.12460 -10.52706 -10.23397 -9.82093 -9.41484 -9.37293 -8.78491 -6.60381 -0.15760 0.54626 0.98534 1.36447 1.49942 1.51602 2.15740 2.34261 2.63389 2.65063 3.03002 3.20667 3.49167 3.67374 3.83500 3.91641 3.95397 4.00790 4.13229 4.32870 4.36251 4.45204 4.52598 4.59447 4.61269 4.71925 4.74278 4.77928 4.87749 4.94504 5.00251 5.01738 5.13467 5.16946 5.23692 5.31917 5.53489 5.72706 5.84174 5.93685 6.02671 6.09506 6.19204 6.46326 6.49201 6.62943 6.68810 6.85113 8.17554 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010839 B = 0.004494 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.708764 B = 6228.868247 C = 7197.923304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.038 3.962 3 Si 0.975 3.025 4 H -0.248 1.248 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.474 4.474 8 H 0.092 0.908 9 C 0.162 3.838 10 C -0.186 4.186 11 C -0.075 4.075 12 C -0.249 4.249 13 C -0.016 4.016 14 C -0.792 4.792 15 S 2.722 3.278 16 O -1.008 7.008 17 O -1.000 7.000 18 N -1.105 6.105 19 C 0.129 3.871 20 C 0.094 3.906 21 H 0.078 0.922 22 C 0.038 3.962 23 N -0.700 5.700 24 C 0.049 3.951 25 C -0.186 4.186 26 C 0.062 3.938 27 O -0.393 6.393 28 H 0.295 0.705 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.418 0.582 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.356 0.644 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.867 -2.886 7.701 16.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.179 4.179 3 Si 0.794 3.206 4 H -0.171 1.171 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.502 4.502 8 H 0.110 0.890 9 C 0.157 3.843 10 C -0.206 4.206 11 C -0.094 4.094 12 C -0.269 4.269 13 C -0.036 4.036 14 C -0.886 4.886 15 S 2.818 3.182 16 O -0.999 6.999 17 O -0.991 6.991 18 N -0.865 5.865 19 C 0.002 3.998 20 C 0.036 3.964 21 H 0.096 0.904 22 C -0.091 4.091 23 N -0.332 5.332 24 C -0.080 4.080 25 C -0.226 4.226 26 C -0.016 4.016 27 O -0.312 6.312 28 H 0.106 0.894 29 H 0.133 0.867 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.253 0.747 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.175 0.825 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.156 -2.775 6.779 15.938 hybrid contribution 0.350 0.723 0.173 0.822 sum 14.506 -2.052 6.951 16.216 Atomic orbital electron populations 1.69820 1.08977 1.31269 1.33143 1.26799 0.95662 1.04787 0.90690 0.85250 0.80150 0.75945 0.79216 1.17090 1.19401 1.17823 1.20157 0.97192 0.91557 1.41312 0.88998 1.17318 0.90988 0.90494 0.85451 1.21584 0.99049 0.97469 1.02449 1.21257 0.97977 0.92925 0.97234 1.20900 1.00514 0.98090 1.07410 1.20584 0.94017 0.95363 0.93613 1.30171 1.26783 1.00867 1.30744 1.00293 0.73170 0.71575 0.73148 1.93418 1.86090 1.37541 1.82803 1.93485 1.86653 1.58449 1.60490 1.55133 1.50357 1.32001 1.49005 1.21396 0.94096 0.94207 0.90088 1.22086 0.87596 1.00296 0.86420 0.90433 1.22190 0.98629 0.95532 0.92781 1.60440 1.27434 1.22596 1.22739 1.21948 0.94696 0.95633 0.95706 1.22868 1.01287 1.02121 0.96282 1.22075 0.85722 0.94489 0.99275 1.86490 1.30751 1.68902 1.45077 0.89413 0.86717 0.85963 0.85422 0.85916 0.74695 0.89381 0.89914 0.88766 0.93179 0.82545 0.89279 0.92234 0.91523 0.88531 0.88053 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.34 10.85 21.83 0.24 -40.11 16 2 C 0.04 1.86 5.24 85.26 0.45 2.31 16 3 Si 0.97 36.60 29.57 68.60 2.03 38.63 16 4 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 7 C -0.47 -24.03 7.66 23.46 0.18 -23.85 16 8 H 0.09 4.35 5.66 -2.91 -0.02 4.34 16 9 C 0.16 8.33 5.55 -21.29 -0.12 8.21 16 10 C -0.19 -9.23 8.66 22.73 0.20 -9.04 16 11 C -0.08 -3.28 10.02 22.22 0.22 -3.06 16 12 C -0.25 -10.40 10.05 22.46 0.23 -10.18 16 13 C -0.02 -0.72 9.53 22.22 0.21 -0.50 16 14 C -0.79 -37.98 5.96 22.73 0.14 -37.85 16 15 S 2.72 121.48 4.97 -56.49 -0.28 121.19 16 16 O -1.01 -46.42 16.34 -128.00 -2.09 -48.51 16 17 O -1.00 -51.44 16.59 -128.00 -2.12 -53.56 16 18 N -1.11 -39.41 5.03 -187.49 -0.94 -40.35 16 19 C 0.13 3.83 5.73 86.38 0.50 4.32 16 20 C 0.09 2.34 2.37 29.96 0.07 2.41 16 21 H 0.08 1.94 6.78 -2.39 -0.02 1.93 16 22 C 0.04 0.77 5.69 85.57 0.49 1.26 16 23 N -0.70 -12.19 6.95 -516.93 -3.59 -15.78 16 24 C 0.05 0.77 5.99 85.43 0.51 1.28 16 25 C -0.19 -2.79 5.70 30.53 0.17 -2.62 16 26 C 0.06 1.22 6.43 72.57 0.47 1.68 16 27 O -0.39 -10.16 9.49 -100.59 -0.95 -11.11 16 28 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 29 H 0.11 5.84 6.21 -2.91 -0.02 5.82 16 30 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 31 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.12 4.99 7.33 -2.91 -0.02 4.97 16 33 H 0.42 13.84 8.30 -96.74 -0.80 13.04 16 34 H 0.09 2.52 8.13 -2.39 -0.02 2.50 16 35 H 0.08 2.47 7.67 -2.39 -0.02 2.46 16 36 H 0.09 1.80 7.74 -2.39 -0.02 1.78 16 37 H 0.05 1.00 7.25 -2.39 -0.02 0.98 16 38 H 0.36 4.75 8.91 -89.70 -0.80 3.95 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.09 6.55 -2.38 -0.02 1.08 16 41 H 0.07 1.08 7.24 -2.39 -0.02 1.07 16 42 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.04 0.79 7.72 -2.39 -0.02 0.77 16 Total: -1.00 -66.50 360.04 -4.57 -71.07 By element: Atomic # 1 Polarization: 44.71 SS G_CDS: -0.55 Total: 44.15 kcal Atomic # 6 Polarization: -69.32 SS G_CDS: 3.71 Total: -65.62 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -4.30 Total: -96.24 kcal Atomic # 8 Polarization: -108.02 SS G_CDS: -5.17 Total: -113.19 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Atomic # 16 Polarization: 121.48 SS G_CDS: -0.28 Total: 121.19 kcal Total: -66.50 -4.57 -71.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601341289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.128 kcal (2) G-P(sol) polarization free energy of solvation -66.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds