Wall clock time and date at job start Tue Mar 31 2020 22:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47117 * 269.99788 * 3 2 1 5 5 H 1.48497 * 109.47591 * 29.99943 * 3 2 1 6 6 H 1.48506 * 109.47039 * 149.99912 * 3 2 1 7 7 C 1.39946 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99888 * 165.55544 * 7 2 1 9 9 C 1.41396 * 120.00178 * 345.56171 * 7 2 1 10 10 C 1.40730 * 120.24169 * 330.82554 * 9 7 2 11 11 C 1.37603 * 119.74349 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.24677 * 0.02562 * 11 10 9 13 13 C 1.38609 * 120.50275 * 0.02562 * 12 11 10 14 14 C 1.37641 * 120.25046 * 359.97438 * 13 12 11 15 15 S 1.76203 * 120.13016 * 180.02562 * 14 13 12 16 16 O 1.42097 * 106.40024 * 128.10342 * 15 14 13 17 17 O 1.42101 * 106.40039 * 261.02368 * 15 14 13 18 18 N 1.65602 * 107.21624 * 14.56269 * 15 14 13 19 19 C 1.44460 * 118.51220 * 96.01462 * 18 15 14 20 20 C 1.54868 * 109.32754 * 268.93333 * 19 18 15 21 21 C 1.47681 * 109.68076 * 290.10336 * 20 19 18 22 22 O 1.42558 * 113.66684 * 60.80289 * 21 20 19 23 23 C 1.40527 * 113.54327 * 272.24175 * 22 21 20 24 24 H 1.09002 * 109.39919 * 335.24691 * 23 22 21 25 25 C 1.52995 * 109.40411 * 215.41058 * 23 22 21 26 26 N 1.46900 * 109.47375 * 65.00373 * 25 23 22 27 27 C 1.48179 * 118.51478 * 275.74842 * 18 15 14 28 28 H 0.96995 * 120.00086 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.13101 * 0.02562 * 10 9 7 30 30 H 1.07993 * 119.87455 * 180.29628 * 11 10 9 31 31 H 1.07999 * 119.74797 * 180.02562 * 12 11 10 32 32 H 1.08005 * 119.87613 * 180.02562 * 13 12 11 33 33 H 1.09004 * 109.49373 * 28.89414 * 19 18 15 34 34 H 1.09004 * 109.49370 * 148.95097 * 19 18 15 35 35 H 1.09005 * 109.43724 * 50.16829 * 20 19 18 36 36 H 1.09002 * 109.43677 * 170.07706 * 20 19 18 37 37 H 1.09004 * 108.64216 * 181.88705 * 21 20 19 38 38 H 1.09003 * 108.64797 * 299.71292 * 21 20 19 39 39 H 1.09006 * 109.47074 * 184.99542 * 25 23 22 40 40 H 1.08997 * 109.47576 * 304.99889 * 25 23 22 41 41 H 1.00902 * 111.00372 * 179.97438 * 26 25 23 42 42 H 1.00899 * 110.99318 * 303.94927 * 26 25 23 43 43 H 1.08997 * 109.23443 * 259.09342 * 27 18 15 44 44 H 1.09010 * 109.23026 * 18.46016 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0623 -1.2269 -0.2328 9 6 1.3345 -2.4170 0.3064 10 6 0.2200 -2.4078 1.1657 11 6 -0.4280 -3.5864 1.4560 12 6 0.0135 -4.7801 0.9057 13 6 1.1107 -4.8012 0.0590 14 6 1.7743 -3.6343 -0.2453 15 16 3.1683 -3.6647 -1.3227 16 8 2.9207 -2.6900 -2.3266 17 8 4.3195 -3.6476 -0.4898 18 7 3.1654 -5.1340 -2.0865 19 6 2.5681 -5.2280 -3.3985 20 6 1.0722 -5.6025 -3.2549 21 6 0.9516 -6.9973 -2.7847 22 8 1.5524 -7.2262 -1.5123 23 6 2.9156 -7.5590 -1.5870 24 1 3.1290 -7.9946 -2.5631 25 6 3.2517 -8.5741 -0.4928 26 7 2.5303 -9.8278 -0.7495 27 6 3.7811 -6.2915 -1.3959 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1258 -1.4791 1.5951 30 1 -1.2863 -3.5811 2.1114 31 1 -0.5014 -5.7004 1.1387 32 1 1.4457 -5.7367 -0.3643 33 1 2.6556 -4.2682 -3.9076 34 1 3.0816 -5.9954 -3.9778 35 1 0.5986 -4.9348 -2.5351 36 1 0.5788 -5.5023 -4.2217 37 1 -0.1060 -7.2536 -2.7219 38 1 1.4232 -7.6537 -3.5160 39 1 4.3248 -8.7660 -0.4924 40 1 2.9536 -8.1754 0.4768 41 1 2.7361 -10.5152 -0.0402 42 1 1.5369 -9.6655 -0.8188 43 1 4.7759 -6.4665 -1.8056 44 1 3.8656 -6.0712 -0.3317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601341340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:09 Heat of formation + Delta-G solvation = -91.429540 kcal Electronic energy + Delta-G solvation = -29857.569714 eV Core-core repulsion = 25901.729455 eV Total energy + Delta-G solvation = -3955.840259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.71978 -37.47659 -36.26228 -35.56070 -34.85751 -34.77216 -33.78941 -32.31716 -30.15639 -29.52619 -28.70834 -26.31207 -25.45550 -23.67507 -21.86175 -21.59773 -21.04067 -20.74062 -18.19094 -17.69073 -17.04074 -16.87941 -16.31326 -16.18064 -16.01104 -15.22969 -15.10565 -14.60601 -14.37883 -13.97768 -13.73559 -13.64741 -13.40357 -13.36927 -12.97257 -12.58629 -12.52160 -12.33070 -11.96026 -11.76421 -11.69765 -11.50763 -11.21899 -11.15900 -11.04709 -10.98503 -10.90262 -10.64218 -10.60148 -10.46414 -10.41670 -9.86786 -9.48051 -9.33143 -9.12457 -8.85824 -8.62155 -7.91445 -7.50657 -6.96689 -4.67731 1.43478 2.44776 2.82082 3.02787 3.09626 3.19824 3.60425 3.77476 3.86960 4.33012 4.47325 4.71158 4.84607 4.92951 4.98652 5.03261 5.10982 5.26203 5.37725 5.44617 5.50574 5.52394 5.57701 5.70724 5.77300 5.83140 5.95551 6.00546 6.17689 6.29120 6.38811 6.46730 6.49957 6.85105 6.91805 7.02590 7.06041 7.17618 7.27001 7.34549 7.41178 7.58371 7.72865 7.89743 7.98676 8.36594 8.58936 8.73343 9.97888 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016944 B = 0.004704 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.128703 B = 5951.416693 C = 6535.640833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.460 4.460 8 H 0.080 0.920 9 C 0.191 3.809 10 C -0.158 4.158 11 C -0.078 4.078 12 C -0.250 4.250 13 C -0.020 4.020 14 C -0.771 4.771 15 S 2.696 3.304 16 O -0.963 6.963 17 O -0.986 6.986 18 N -0.996 5.996 19 C 0.117 3.883 20 C -0.186 4.186 21 C 0.071 3.929 22 O -0.356 6.356 23 C 0.080 3.920 24 H 0.073 0.927 25 C 0.059 3.941 26 N -0.850 5.850 27 C 0.100 3.900 28 H 0.287 0.713 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.341 0.659 42 H 0.347 0.653 43 H 0.075 0.925 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 -13.341 -4.314 14.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.489 4.489 8 H 0.098 0.902 9 C 0.186 3.814 10 C -0.178 4.178 11 C -0.097 4.097 12 C -0.270 4.270 13 C -0.038 4.038 14 C -0.865 4.865 15 S 2.794 3.206 16 O -0.953 6.953 17 O -0.976 6.976 18 N -0.832 5.832 19 C -0.009 4.009 20 C -0.225 4.225 21 C -0.005 4.005 22 O -0.274 6.274 23 C 0.019 3.981 24 H 0.091 0.909 25 C -0.072 4.072 26 N -0.380 5.380 27 C -0.027 4.027 28 H 0.098 0.902 29 H 0.138 0.862 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.151 0.849 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.153 0.847 42 H 0.160 0.840 43 H 0.093 0.907 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.772 -12.553 -5.016 13.800 hybrid contribution -0.897 0.710 1.042 1.548 sum 1.875 -11.843 -3.974 12.632 Atomic orbital electron populations 1.69786 1.07701 1.30060 1.32552 1.25877 0.94827 1.01669 0.91226 0.86247 0.80848 0.79581 0.80022 1.18609 1.19612 1.17800 1.19769 0.97168 0.91517 1.40398 0.90172 1.16913 0.89543 0.89532 0.85428 1.21355 0.99011 0.96784 1.00678 1.20884 0.97460 0.93610 0.97740 1.20434 1.02319 0.96377 1.07846 1.20948 0.93289 0.96129 0.93470 1.29801 1.27582 1.00904 1.28227 1.01541 0.74610 0.70815 0.73642 1.93496 1.86499 1.56199 1.59101 1.93483 1.49511 1.85650 1.68993 1.57334 1.72441 1.26480 1.26984 1.21277 0.92042 1.03703 0.83911 1.22173 0.98260 0.98916 1.03150 1.21444 0.98431 0.95847 0.84798 1.87370 1.22156 1.88593 1.29289 1.22508 0.82961 0.92888 0.99714 0.90904 1.21926 0.99158 0.89302 0.96837 1.58718 1.14333 1.10565 1.54372 1.22452 0.95786 0.86170 0.98261 0.90220 0.86231 0.89076 0.89168 0.84926 0.88437 0.90778 0.89431 0.89599 0.89932 0.93303 0.89656 0.93940 0.84713 0.83972 0.90700 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.05 11.08 55.55 0.62 -19.43 16 2 C 0.09 2.20 5.18 -17.34 -0.09 2.11 16 3 Si 0.91 19.38 29.58 -169.99 -5.03 14.35 16 4 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.25 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.88 7.71 -37.74 -0.29 -13.17 16 8 H 0.08 2.26 6.92 -52.49 -0.36 1.90 16 9 C 0.19 5.24 5.53 -106.83 -0.59 4.65 16 10 C -0.16 -4.13 8.66 -38.87 -0.34 -4.46 16 11 C -0.08 -1.82 10.02 -39.66 -0.40 -2.21 16 12 C -0.25 -5.52 10.05 -39.29 -0.39 -5.91 16 13 C -0.02 -0.43 8.46 -39.66 -0.34 -0.77 16 14 C -0.77 -19.14 5.85 -38.87 -0.23 -19.37 16 15 S 2.70 61.53 4.34 -107.50 -0.47 61.06 16 16 O -0.96 -24.28 15.19 -57.17 -0.87 -25.15 16 17 O -0.99 -24.39 16.95 -57.17 -0.97 -25.35 16 18 N -1.00 -16.77 2.13 -112.52 -0.24 -17.01 16 19 C 0.12 1.66 5.62 -4.15 -0.02 1.64 16 20 C -0.19 -2.51 6.03 -28.32 -0.17 -2.68 16 21 C 0.07 0.83 6.04 34.59 0.21 1.04 16 22 O -0.36 -4.68 6.30 -34.10 -0.21 -4.90 16 23 C 0.08 0.93 2.54 -25.86 -0.07 0.86 16 24 H 0.07 0.77 7.20 -51.93 -0.37 0.39 16 25 C 0.06 0.60 6.39 -3.83 -0.02 0.58 16 26 N -0.85 -7.67 9.62 -10.37 -0.10 -7.77 16 27 C 0.10 1.39 5.18 -2.24 -0.01 1.38 16 28 H 0.29 6.61 8.30 -40.82 -0.34 6.27 16 29 H 0.12 3.13 6.39 -52.49 -0.34 2.80 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.13 2.52 3.11 -52.48 -0.16 2.35 16 33 H 0.10 1.50 6.78 -51.93 -0.35 1.15 16 34 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.09 1.51 6.98 -51.93 -0.36 1.14 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.47 7.28 -51.93 -0.38 0.09 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.34 2.47 9.08 -39.29 -0.36 2.12 16 42 H 0.35 3.20 8.55 -39.29 -0.34 2.87 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.37 7.28 -51.92 -0.38 0.99 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -32.65 352.56 -10.62 -43.27 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -5.91 Total: 11.92 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: -2.75 Total: -36.32 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.28 Total: -44.21 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -2.05 Total: -55.40 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Atomic # 16 Polarization: 61.53 SS G_CDS: -0.47 Total: 61.06 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.65 -10.62 -43.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601341340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.155 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds