Wall clock time and date at job start Tue Mar 31 2020 22:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86803 * 119.99823 * 2 1 4 4 H 1.48497 * 109.47593 * 239.99991 * 3 2 1 5 5 H 1.48500 * 109.46982 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46914 * 120.00011 * 3 2 1 7 7 C 1.39942 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00240 * 169.65125 * 7 2 1 9 9 C 1.41400 * 120.00056 * 349.65290 * 7 2 1 10 10 C 1.40735 * 120.24020 * 324.33369 * 9 7 2 11 11 C 1.37598 * 119.74502 * 180.02562 * 10 9 7 12 12 C 1.38665 * 120.24536 * 359.97255 * 11 10 9 13 13 C 1.38613 * 120.50039 * 0.02562 * 12 11 10 14 14 C 1.37634 * 120.24936 * 359.97438 * 13 12 11 15 15 S 1.76203 * 120.12438 * 179.74302 * 14 13 12 16 16 O 1.42101 * 106.40290 * 229.01329 * 15 14 13 17 17 O 1.42092 * 106.40347 * 1.93540 * 15 14 13 18 18 N 1.65598 * 107.21710 * 115.47683 * 15 14 13 19 19 C 1.43425 * 120.63733 * 277.22949 * 18 15 14 20 20 C 1.54799 * 116.57562 * 269.49327 * 19 18 15 21 21 C 1.55195 * 108.79462 * 319.48886 * 20 19 18 22 22 O 1.39643 * 110.57121 * 322.07459 * 21 20 19 23 23 C 1.42374 * 108.63634 * 101.17187 * 22 21 20 24 24 H 1.09003 * 108.51016 * 28.49528 * 23 22 21 25 25 C 1.53005 * 108.61767 * 146.34211 * 23 22 21 26 26 N 1.46899 * 109.46959 * 304.24154 * 25 23 22 27 27 C 1.46918 * 113.79206 * 267.45309 * 23 22 21 28 28 H 0.96996 * 120.00307 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.12975 * 0.03806 * 10 9 7 30 30 H 1.07991 * 119.87839 * 179.97438 * 11 10 9 31 31 H 1.07996 * 119.74634 * 180.02562 * 12 11 10 32 32 H 1.08000 * 119.87032 * 179.97438 * 13 12 11 33 33 H 1.09005 * 108.12580 * 31.10836 * 19 18 15 34 34 H 1.08996 * 108.13340 * 147.59581 * 19 18 15 35 35 H 1.08996 * 109.66275 * 199.66133 * 20 19 18 36 36 H 1.08998 * 109.65156 * 79.30476 * 20 19 18 37 37 H 1.08997 * 109.25373 * 201.79279 * 21 20 19 38 38 H 1.09001 * 109.25703 * 82.35705 * 21 20 19 39 39 H 1.08988 * 109.47261 * 64.24212 * 25 23 22 40 40 H 1.09000 * 109.46778 * 184.24522 * 25 23 22 41 41 H 1.00900 * 111.00657 * 56.04778 * 26 25 23 42 42 H 1.00897 * 110.99885 * 180.02562 * 26 25 23 43 43 H 1.09001 * 109.98882 * 297.49081 * 27 23 22 44 44 H 1.09001 * 109.98990 * 176.12103 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6966 -1.2124 5 1 1.2771 2.7465 0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0749 -1.2194 -0.1686 9 6 1.3183 -2.4266 0.2189 10 6 0.2344 -2.4744 1.1152 11 6 -0.4292 -3.6620 1.3214 12 6 -0.0338 -4.8088 0.6495 13 6 1.0324 -4.7733 -0.2356 14 6 1.7106 -3.5964 -0.4573 15 16 3.0697 -3.5566 -1.5780 16 8 4.1312 -2.9004 -0.8983 17 8 3.1841 -4.8664 -2.1168 18 7 2.6390 -2.5695 -2.8359 19 6 1.8471 -3.0717 -3.9211 20 6 2.6187 -3.6615 -5.1265 21 6 3.8527 -2.7661 -5.4168 22 8 3.5371 -1.4191 -5.2271 23 6 4.0442 -1.0068 -3.9623 24 1 4.9188 -1.6129 -3.7258 25 6 4.4787 0.4568 -4.0638 26 7 5.4493 0.6047 -5.1565 27 6 3.0751 -1.1333 -2.8653 28 1 -0.4850 0.8400 -0.0004 29 1 -0.0756 -1.5823 1.6390 30 1 -1.2609 -3.7012 2.0090 31 1 -0.5606 -5.7365 0.8171 32 1 1.3319 -5.6727 -0.7531 33 1 1.1918 -3.8505 -3.5307 34 1 1.2188 -2.2596 -4.2868 35 1 1.9698 -3.6838 -6.0020 36 1 2.9490 -4.6731 -4.8909 37 1 4.1730 -2.9187 -6.4474 38 1 4.6642 -3.0434 -4.7440 39 1 3.6082 1.0812 -4.2641 40 1 4.9388 0.7651 -3.1250 41 1 5.0685 0.2648 -6.0270 42 1 5.7522 1.5631 -5.2438 43 1 2.2170 -0.4870 -3.0498 44 1 3.5465 -0.8676 -1.9191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601341341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:13 Heat of formation + Delta-G solvation = -90.900030 kcal Electronic energy + Delta-G solvation = -30026.520746 eV Core-core repulsion = 26070.703449 eV Total energy + Delta-G solvation = -3955.817298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.76388 -37.65692 -36.44636 -35.27591 -34.93527 -34.75833 -33.87075 -31.86660 -30.27378 -29.65264 -28.65434 -26.03460 -25.47569 -23.63511 -21.75745 -21.30487 -21.17338 -20.98436 -18.14763 -17.67673 -17.27457 -16.74371 -16.11546 -15.96730 -15.72638 -15.33667 -14.84375 -14.69391 -14.41793 -14.19862 -13.96047 -13.47683 -13.26663 -13.08370 -12.87913 -12.76122 -12.40244 -12.13399 -12.02402 -11.72698 -11.71672 -11.38599 -11.32901 -11.27360 -11.19136 -11.08576 -10.90917 -10.65117 -10.63494 -10.43124 -10.12852 -9.91371 -9.50087 -9.42245 -9.28071 -8.68577 -8.45948 -8.07166 -7.60032 -7.07254 -4.83219 1.42623 2.27651 2.66694 2.91139 2.93665 3.02717 3.71024 3.73649 4.05211 4.35107 4.56176 4.69751 4.98099 5.11270 5.15259 5.26430 5.28856 5.32503 5.42666 5.58940 5.63367 5.75721 5.79248 5.88870 5.97284 6.04716 6.08749 6.16942 6.18837 6.31505 6.35453 6.39407 6.60020 6.73720 6.90057 6.98842 7.10638 7.22447 7.28092 7.37492 7.44979 7.46843 7.62796 7.73104 7.88451 8.27881 8.48458 8.58713 9.89256 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010762 B = 0.006912 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.175954 B = 4050.026474 C = 5848.583651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.084 3.916 3 Si 0.901 3.099 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.488 4.488 8 H 0.113 0.887 9 C 0.200 3.800 10 C -0.152 4.152 11 C -0.076 4.076 12 C -0.243 4.243 13 C -0.006 4.006 14 C -0.770 4.770 15 S 2.703 3.297 16 O -0.974 6.974 17 O -0.992 6.992 18 N -0.984 5.984 19 C 0.136 3.864 20 C -0.168 4.168 21 C 0.059 3.941 22 O -0.352 6.352 23 C 0.066 3.934 24 H 0.072 0.928 25 C 0.058 3.942 26 N -0.848 5.848 27 C 0.108 3.892 28 H 0.287 0.713 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.036 0.964 40 H 0.086 0.914 41 H 0.346 0.654 42 H 0.338 0.662 43 H 0.081 0.919 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 2.005 -8.182 8.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.137 4.137 3 Si 0.724 3.276 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.516 4.516 8 H 0.130 0.870 9 C 0.196 3.804 10 C -0.172 4.172 11 C -0.095 4.095 12 C -0.263 4.263 13 C -0.026 4.026 14 C -0.864 4.864 15 S 2.802 3.198 16 O -0.964 6.964 17 O -0.983 6.983 18 N -0.818 5.818 19 C 0.008 3.992 20 C -0.208 4.208 21 C -0.019 4.019 22 O -0.270 6.270 23 C 0.007 3.993 24 H 0.090 0.910 25 C -0.074 4.074 26 N -0.378 5.378 27 C -0.016 4.016 28 H 0.098 0.902 29 H 0.135 0.865 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.160 0.840 42 H 0.150 0.850 43 H 0.100 0.900 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.919 1.364 -7.841 8.871 hybrid contribution -1.400 1.355 0.091 1.950 sum 2.519 2.718 -7.750 8.590 Atomic orbital electron populations 1.69765 1.07620 1.30097 1.33165 1.25905 0.94756 1.01301 0.91702 0.86463 0.80392 0.79714 0.81045 1.17876 1.20049 1.18162 1.20319 0.97596 0.90337 1.43369 0.86983 1.16997 0.88812 0.89655 0.84955 1.21411 0.99185 0.96362 1.00260 1.20924 0.97453 0.93659 0.97481 1.20534 1.02332 0.97603 1.05838 1.20275 0.92837 0.95047 0.94478 1.29967 1.28802 1.02086 1.25592 1.01092 0.74545 0.71577 0.72626 1.93465 1.53866 1.75520 1.73566 1.93443 1.87289 1.38168 1.79376 1.57447 1.68769 1.21167 1.34447 1.20383 0.92360 0.99113 0.87374 1.23378 0.98638 1.00085 0.98718 1.22503 0.96371 0.82297 1.00720 1.87558 1.79381 1.25188 1.34832 1.21670 0.96334 0.96074 0.85228 0.90977 1.21979 0.94247 0.95041 0.96085 1.58658 1.43297 1.26381 1.09431 1.21608 0.98670 0.81569 0.99787 0.90243 0.86513 0.88694 0.88552 0.87369 0.91677 0.91047 0.90598 0.90361 0.90959 0.92773 0.94559 0.89591 0.84045 0.85004 0.90026 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.06 11.32 55.55 0.63 -17.43 16 2 C 0.08 1.88 5.22 -17.34 -0.09 1.79 16 3 Si 0.90 16.74 29.57 -169.99 -5.03 11.72 16 4 H -0.25 -4.36 7.11 56.52 0.40 -3.96 16 5 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.49 -11.64 6.41 -37.74 -0.24 -11.88 16 8 H 0.11 2.67 4.24 -52.48 -0.22 2.45 16 9 C 0.20 4.98 5.45 -106.82 -0.58 4.39 16 10 C -0.15 -3.69 8.63 -38.87 -0.34 -4.03 16 11 C -0.08 -1.68 10.02 -39.66 -0.40 -2.08 16 12 C -0.24 -5.24 10.05 -39.29 -0.39 -5.63 16 13 C -0.01 -0.15 9.53 -39.66 -0.38 -0.52 16 14 C -0.77 -18.24 5.96 -38.88 -0.23 -18.48 16 15 S 2.70 59.01 5.00 -107.50 -0.54 58.47 16 16 O -0.97 -22.95 14.52 -57.17 -0.83 -23.78 16 17 O -0.99 -22.22 16.31 -57.17 -0.93 -23.16 16 18 N -0.98 -18.47 2.85 -115.88 -0.33 -18.80 16 19 C 0.14 2.25 4.89 -4.72 -0.02 2.23 16 20 C -0.17 -2.36 6.74 -24.62 -0.17 -2.53 16 21 C 0.06 0.81 6.38 38.32 0.24 1.05 16 22 O -0.35 -5.12 8.97 -31.95 -0.29 -5.41 16 23 C 0.07 1.02 2.31 -29.64 -0.07 0.95 16 24 H 0.07 1.17 6.76 -51.93 -0.35 0.82 16 25 C 0.06 0.79 6.43 -3.82 -0.02 0.76 16 26 N -0.85 -9.86 9.62 -10.37 -0.10 -9.96 16 27 C 0.11 1.91 4.33 -4.93 -0.02 1.89 16 28 H 0.29 6.04 8.30 -40.82 -0.34 5.71 16 29 H 0.12 2.84 6.76 -52.49 -0.35 2.49 16 30 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.11 2.25 7.33 -52.49 -0.38 1.87 16 33 H 0.06 1.10 7.90 -51.93 -0.41 0.69 16 34 H 0.07 1.14 7.99 -51.93 -0.41 0.72 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.79 6.66 -51.93 -0.35 0.44 16 39 H 0.04 0.47 8.14 -51.94 -0.42 0.05 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.35 3.86 8.20 -39.29 -0.32 3.54 16 42 H 0.34 3.19 9.08 -39.29 -0.36 2.83 16 43 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.12 2.20 5.03 -51.93 -0.26 1.94 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -27.77 355.06 -10.72 -38.49 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -5.94 Total: 16.58 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: -2.71 Total: -32.08 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.20 Total: -46.19 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -2.05 Total: -52.34 kcal Atomic # 14 Polarization: 16.74 SS G_CDS: -5.03 Total: 11.72 kcal Atomic # 16 Polarization: 59.01 SS G_CDS: -0.54 Total: 58.47 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.77 -10.72 -38.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601341341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.409 kcal (2) G-P(sol) polarization free energy of solvation -27.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds