Wall clock time and date at job start Tue Mar 31 2020 22:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99664 * 2 1 4 4 H 1.48504 * 109.47166 * 240.00316 * 3 2 1 5 5 H 1.48496 * 109.47046 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46830 * 120.00316 * 3 2 1 7 7 C 1.37870 * 120.00528 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00508 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47456 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47213 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46986 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99741 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00093 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.99865 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.47110 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47116 * 179.97438 * 16 15 13 18 18 C 1.38233 * 120.00109 * 269.72529 * 17 16 15 19 19 C 1.38238 * 119.99754 * 179.76611 * 18 17 16 20 20 C 1.38234 * 120.00038 * 0.48818 * 19 18 17 21 21 S 1.76199 * 120.00356 * 179.76975 * 20 19 18 22 22 N 1.65603 * 107.21663 * 270.02171 * 21 20 19 23 23 O 1.42100 * 106.39750 * 23.55962 * 21 20 19 24 24 O 1.42096 * 106.40667 * 156.48208 * 21 20 19 25 25 C 1.38238 * 120.00047 * 359.78460 * 20 19 18 26 26 C 1.38235 * 120.00108 * 359.96171 * 25 20 19 27 27 H 0.96998 * 120.00218 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.46981 * 59.99816 * 9 7 2 29 29 H 1.09003 * 109.46554 * 300.00354 * 9 7 2 30 30 H 1.09005 * 109.46552 * 60.00009 * 10 9 7 31 31 H 1.08991 * 109.47305 * 300.00120 * 10 9 7 32 32 H 1.09000 * 109.47214 * 59.99786 * 11 10 9 33 33 H 1.09000 * 109.46955 * 300.00002 * 11 10 9 34 34 H 0.96998 * 120.00681 * 359.97438 * 12 11 10 35 35 H 1.09000 * 109.47543 * 59.99570 * 15 13 12 36 36 H 1.09008 * 109.47338 * 300.00084 * 15 13 12 37 37 H 1.09000 * 109.46884 * 60.00335 * 16 15 13 38 38 H 1.09000 * 109.46955 * 299.99651 * 16 15 13 39 39 H 1.08004 * 119.99934 * 0.02562 * 18 17 16 40 40 H 1.07999 * 119.99931 * 180.25459 * 19 18 17 41 41 H 0.97001 * 120.00190 * 149.99724 * 22 21 20 42 42 H 0.96998 * 119.99944 * 329.99950 * 22 21 20 43 43 H 1.08000 * 120.00559 * 179.97438 * 25 20 19 44 44 H 1.07999 * 120.00165 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9871 -0.0012 12 7 2.4326 -6.1005 -0.0018 13 6 1.9833 -7.3712 -0.0019 14 8 0.7910 -7.5929 -0.0010 15 6 2.9627 -8.5166 -0.0031 16 6 2.1978 -9.8417 -0.0024 17 6 3.1772 -10.9871 -0.0042 18 6 3.6201 -11.5158 -1.2022 19 6 4.5222 -12.5633 -1.2038 20 6 4.9735 -13.0886 -0.0075 21 16 6.1187 -14.4278 -0.0095 22 7 5.2350 -15.8283 -0.0086 23 8 6.7913 -14.3785 -1.2602 24 8 6.7951 -14.3793 1.2392 25 6 4.5262 -12.5636 1.1905 26 6 3.6282 -11.5127 1.1922 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5570 0.8897 30 1 2.8728 -3.6045 0.8878 31 1 2.8714 -3.6039 -0.8922 32 1 0.8528 -5.0447 -0.8904 33 1 0.8549 -5.0449 0.8895 34 1 3.3862 -5.9233 -0.0029 35 1 3.5901 -8.4592 0.8863 36 1 3.5887 -8.4585 -0.8936 37 1 1.5701 -9.8993 -0.8917 38 1 1.5722 -9.8995 0.8884 39 1 3.2647 -11.1077 -2.1368 40 1 4.8715 -12.9736 -2.1398 41 1 5.5909 -16.6266 -0.4294 42 1 4.3616 -15.8505 0.4127 43 1 4.8784 -12.9743 2.1252 44 1 3.2783 -11.1028 2.1282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609142011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:40 Heat of formation + Delta-G solvation = -116.251164 kcal Electronic energy + Delta-G solvation = -25197.191724 eV Core-core repulsion = 21240.275119 eV Total energy + Delta-G solvation = -3956.916605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.16896 -39.40046 -37.61788 -36.29251 -35.60046 -34.51101 -33.71859 -33.35792 -31.58676 -31.42972 -30.29741 -27.03362 -25.22805 -23.41755 -23.04500 -21.79706 -20.77859 -20.04687 -19.87069 -18.87005 -17.87154 -17.27724 -16.92492 -16.51479 -16.42677 -15.79357 -15.58978 -15.50441 -15.25196 -14.74664 -14.49020 -14.45581 -14.03242 -13.89632 -13.41050 -13.14372 -12.70293 -12.56500 -12.54886 -12.44212 -12.31679 -12.21562 -11.93153 -11.86629 -11.70936 -11.31674 -11.29339 -10.95437 -10.91065 -10.77731 -10.65394 -10.02065 -9.91009 -9.68537 -9.56783 -9.38869 -9.15859 -8.85514 -8.39990 -6.04649 -4.08125 -0.11091 0.26542 0.78411 2.59670 2.68097 2.91436 3.23605 3.30024 3.34131 3.35148 3.37886 3.95226 4.24476 4.30323 4.37219 4.41892 4.63576 4.73387 4.79602 4.94776 4.95854 5.15594 5.28698 5.31063 5.33620 5.43237 5.52285 5.54443 5.63734 5.68196 5.72090 5.76898 6.02627 6.10538 6.31171 6.41778 6.47609 6.54371 6.77108 6.95458 7.59360 7.62307 7.71743 7.93474 8.29213 8.35183 8.98220 9.56290 11.06512 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030131 B = 0.001389 C = 0.001360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.063048 B =20148.285502 C =20584.484925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.726 5.726 13 C 0.507 3.493 14 O -0.546 6.546 15 C -0.136 4.136 16 C -0.076 4.076 17 C -0.017 4.017 18 C -0.138 4.138 19 C -0.014 4.014 20 C -0.685 4.685 21 S 2.703 3.297 22 N -1.249 6.249 23 O -0.964 6.964 24 O -0.962 6.962 25 C -0.020 4.020 26 C -0.138 4.138 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.399 0.601 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.421 0.579 42 H 0.417 0.583 43 H 0.142 0.858 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.586 -33.790 -0.037 35.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.377 5.377 13 C 0.292 3.708 14 O -0.424 6.424 15 C -0.176 4.176 16 C -0.113 4.113 17 C -0.018 4.018 18 C -0.157 4.157 19 C -0.034 4.034 20 C -0.773 4.773 21 S 2.792 3.208 22 N -0.923 5.923 23 O -0.954 6.954 24 O -0.951 6.951 25 C -0.039 4.039 26 C -0.156 4.156 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.233 0.767 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.154 0.846 40 H 0.160 0.840 41 H 0.251 0.749 42 H 0.244 0.756 43 H 0.160 0.840 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.597 -33.570 -0.041 34.915 hybrid contribution -0.023 1.153 -0.008 1.153 sum 9.573 -32.417 -0.049 33.801 Atomic orbital electron populations 1.69951 1.06066 1.26838 1.50385 1.25024 0.94859 0.99305 0.95206 0.86635 0.79561 0.83056 0.78596 1.20238 1.21242 1.20244 1.21165 0.92962 0.90956 1.51201 0.92693 1.19029 0.93843 0.90862 0.97649 1.21891 0.99778 0.93359 1.00886 1.21657 0.91894 0.85172 1.01986 1.46245 1.10893 1.06011 1.74510 1.20538 0.89616 0.84172 0.76434 1.90711 1.16943 1.84859 1.49866 1.21639 0.98493 0.92600 1.04906 1.20517 0.95660 0.89677 1.05495 1.20385 0.93772 0.94352 0.93277 1.21283 0.98580 0.97430 0.98372 1.20948 0.92153 0.93707 0.96546 1.30587 1.23447 1.23455 0.99766 1.01481 0.72810 0.72659 0.73864 1.53138 1.34858 1.28974 1.75318 1.93603 1.71604 1.86300 1.43852 1.93619 1.70399 1.86257 1.44852 1.20984 0.92420 0.93971 0.96504 1.21277 0.98580 0.97393 0.98385 0.92848 0.96286 0.96278 0.92721 0.92713 0.91761 0.91765 0.76724 0.88650 0.88646 0.89351 0.89340 0.84639 0.84018 0.74914 0.75574 0.83999 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 11 C 0.12 1.96 5.67 -4.04 -0.02 1.93 16 12 N -0.73 -9.54 5.56 -60.30 -0.33 -9.88 16 13 C 0.51 6.57 7.83 -10.98 -0.09 6.48 16 14 O -0.55 -9.31 15.98 5.56 0.09 -9.22 16 15 C -0.14 -1.13 5.68 -27.89 -0.16 -1.29 16 16 C -0.08 -0.61 4.64 -27.88 -0.13 -0.74 16 17 C -0.02 -0.13 5.13 -104.62 -0.54 -0.66 16 18 C -0.14 -0.93 9.70 -39.58 -0.38 -1.31 16 19 C -0.01 -0.10 9.52 -39.58 -0.38 -0.47 16 20 C -0.68 -4.54 5.97 -39.58 -0.24 -4.78 16 21 S 2.70 17.47 6.28 -107.50 -0.68 16.80 16 22 N -1.25 -3.21 9.52 60.35 0.57 -2.64 16 23 O -0.96 -9.25 17.28 -57.17 -0.99 -10.24 16 24 O -0.96 -9.40 17.28 -57.17 -0.99 -10.38 16 25 C -0.02 -0.13 9.52 -39.58 -0.38 -0.50 16 26 C -0.14 -0.91 9.70 -39.58 -0.38 -1.30 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.40 4.12 8.47 -40.82 -0.35 3.77 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 37 H 0.09 0.76 8.04 -51.93 -0.42 0.34 16 38 H 0.09 0.75 8.04 -51.93 -0.42 0.34 16 39 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 40 H 0.14 0.76 7.62 -52.49 -0.40 0.36 16 41 H 0.42 0.48 8.96 -34.47 -0.31 0.17 16 42 H 0.42 0.19 8.96 -34.47 -0.31 -0.12 16 43 H 0.14 0.71 7.62 -52.49 -0.40 0.31 16 44 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -38.18 389.27 -10.49 -48.67 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.37 Total: -1.49 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -3.38 Total: -17.93 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.98 Total: -38.36 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.89 Total: -29.84 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 17.47 SS G_CDS: -0.68 Total: 16.80 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.18 -10.49 -48.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.583 kcal (2) G-P(sol) polarization free energy of solvation -38.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds