Wall clock time and date at job start Tue Mar 31 2020 23:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35903 * 116.99959 * 180.02562 * 11 10 9 13 13 C 1.38875 * 119.97966 * 359.71941 * 12 11 10 14 14 C 1.38260 * 120.26474 * 179.76964 * 13 12 11 15 15 C 1.37985 * 120.21420 * 0.50757 * 14 13 12 16 16 C 1.39690 * 119.95477 * 359.75012 * 15 14 13 17 17 C 1.47471 * 120.13601 * 180.02562 * 16 15 14 18 18 N 1.29800 * 119.99380 * 359.97438 * 17 16 15 19 19 N 1.40099 * 119.99558 * 180.02562 * 18 17 16 20 20 C 1.34777 * 119.99900 * 180.02562 * 19 18 17 21 21 O 1.21562 * 119.99864 * 359.97438 * 20 19 18 22 22 C 1.48068 * 120.00218 * 179.97438 * 20 19 18 23 23 C 1.39491 * 120.10507 * 179.97438 * 22 20 19 24 24 N 1.32063 * 119.87090 * 180.02562 * 23 22 20 25 25 C 1.32149 * 120.07439 * 0.02562 * 24 23 22 26 26 C 1.38715 * 120.20742 * 359.97438 * 25 24 23 27 27 N 1.31812 * 120.13067 * 359.76388 * 26 25 24 28 28 C 1.38426 * 119.97719 * 179.97438 * 12 11 10 29 29 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 31 31 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 32 32 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 33 33 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 34 34 H 1.08001 * 119.86437 * 0.02562 * 13 12 11 35 35 H 1.07993 * 119.89183 * 180.23296 * 14 13 12 36 36 H 1.08001 * 120.02327 * 179.76292 * 15 14 13 37 37 H 1.07998 * 120.00574 * 179.97438 * 17 16 15 38 38 H 0.96998 * 120.00280 * 359.97438 * 19 18 17 39 39 H 1.08004 * 120.05863 * 359.97438 * 23 22 20 40 40 H 1.08004 * 119.89375 * 179.97438 * 25 24 23 41 41 H 1.07994 * 119.93543 * 180.02562 * 26 25 24 42 42 H 1.08004 * 120.10377 * 359.95868 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2708 -6.0394 0.0004 13 6 3.6576 -5.9663 -0.0045 14 6 4.4164 -7.1221 0.0008 15 6 3.8007 -8.3569 0.0003 16 6 2.4063 -8.4411 -0.0002 17 6 1.7441 -9.7588 -0.0001 18 7 2.4572 -10.8434 0.0000 19 7 1.8281 -12.0952 -0.0005 20 6 2.5685 -13.2214 0.0001 21 8 3.7821 -13.1509 0.0005 22 6 1.9038 -14.5444 0.0002 23 6 2.6679 -15.7114 0.0002 24 7 2.0702 -16.8890 -0.0002 25 6 0.7507 -16.9620 -0.0012 26 6 -0.0123 -15.8035 -0.0012 27 7 0.5758 -14.6239 0.0044 28 6 1.6418 -7.2726 0.0004 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5566 0.8902 32 1 2.8718 -3.6044 0.8905 33 1 2.8718 -3.6044 -0.8895 34 1 4.1453 -5.0027 -0.0082 35 1 5.4944 -7.0582 0.0007 36 1 4.3964 -9.2578 0.0005 37 1 0.6659 -9.8214 0.0000 38 1 0.8598 -12.1514 -0.0005 39 1 3.7463 -15.6519 -0.0003 40 1 0.2649 -17.9266 -0.0020 41 1 -1.0903 -15.8682 -0.0016 42 1 0.5633 -7.3306 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726737744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:25 Heat of formation + Delta-G solvation = 42.938994 kcal Electronic energy + Delta-G solvation = -25871.019625 eV Core-core repulsion = 21817.854823 eV Total energy + Delta-G solvation = -4053.164802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90561 -39.91698 -39.65174 -37.69203 -36.45769 -35.17866 -33.43736 -33.04963 -32.28046 -31.02536 -30.06318 -29.03516 -26.29810 -25.36594 -25.12773 -23.85004 -22.45281 -21.80063 -21.17832 -20.25575 -18.96204 -18.40094 -17.67846 -17.32587 -17.16350 -16.28804 -16.12037 -15.89649 -15.67218 -15.37870 -15.23442 -14.88672 -14.82973 -14.57360 -14.34410 -13.56989 -13.42794 -13.31308 -12.92152 -12.51595 -12.46288 -12.33557 -12.03161 -11.62843 -11.48575 -11.44949 -10.99085 -10.89849 -10.84905 -10.62937 -10.45566 -10.19399 -9.96001 -9.88528 -9.75171 -9.69067 -9.33926 -8.50893 -8.44903 -7.90551 -6.12318 -4.17179 -0.36241 0.29646 0.64749 1.59161 1.87670 1.96464 2.47381 3.11504 3.13269 3.27697 3.32285 3.33758 3.47533 3.64555 3.73758 3.93795 4.03248 4.34420 4.39417 4.41417 4.46100 4.72197 4.81740 4.98345 5.12957 5.24237 5.27583 5.39706 5.51720 5.52398 5.76979 5.99609 5.99736 6.01144 6.32019 6.41381 6.46034 6.49872 6.59762 6.66355 6.83957 6.87414 7.05070 7.46585 7.61001 7.77188 7.88890 8.00231 8.21123 8.88163 9.47373 10.99114 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.037845 B = 0.001378 C = 0.001331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.689798 B =20312.250733 C =21031.493352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.064 3.936 11 O -0.314 6.314 12 C 0.140 3.860 13 C -0.190 4.190 14 C -0.086 4.086 15 C -0.125 4.125 16 C -0.030 4.030 17 C 0.133 3.867 18 N -0.237 5.237 19 N -0.566 5.566 20 C 0.596 3.404 21 O -0.489 6.489 22 C 0.031 3.969 23 C 0.117 3.883 24 N -0.437 5.437 25 C 0.077 3.923 26 C 0.053 3.947 27 N -0.415 5.415 28 C -0.129 4.129 29 H 0.264 0.736 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.396 0.604 39 H 0.187 0.813 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.157 -32.880 -0.012 32.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.010 4.010 11 O -0.228 6.228 12 C 0.093 3.907 13 C -0.210 4.210 14 C -0.105 4.105 15 C -0.145 4.145 16 C -0.032 4.032 17 C -0.077 4.077 18 N -0.040 5.040 19 N -0.308 5.308 20 C 0.379 3.621 21 O -0.359 6.359 22 C -0.111 4.111 23 C -0.043 4.043 24 N -0.151 5.151 25 C -0.084 4.084 26 C -0.110 4.110 27 N -0.133 5.133 28 C -0.150 4.150 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.236 0.764 39 H 0.204 0.796 40 H 0.197 0.803 41 H 0.198 0.802 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.565 -33.206 -0.005 33.243 hybrid contribution -0.931 1.140 -0.002 1.472 sum 0.634 -32.066 -0.008 32.072 Atomic orbital electron populations 1.69965 1.06105 1.27102 1.49557 1.24979 0.94897 0.99364 0.94845 0.86547 0.79508 0.82585 0.78740 1.20084 1.21114 1.20078 1.20935 0.93036 0.90224 1.52472 0.92388 1.19119 0.94167 0.88969 0.98896 1.23363 0.97143 0.80694 0.99761 1.86180 1.36414 1.13110 1.87062 1.18960 0.90050 0.87493 0.94237 1.21598 0.93194 1.00131 1.06077 1.20901 0.99855 0.91617 0.98084 1.21223 0.93392 0.98152 1.01743 1.17917 0.93068 0.88943 1.03321 1.24513 0.97655 0.90806 0.94717 1.74997 1.25496 0.89998 1.13550 1.46620 1.09356 1.02628 1.72184 1.17294 0.86324 0.81428 0.77005 1.90856 1.12506 1.86104 1.46457 1.21991 0.91041 0.95283 1.02802 1.23900 1.02764 0.86661 0.90945 1.68696 1.11074 1.26543 1.08823 1.24216 0.90516 1.00956 0.92684 1.23907 1.02544 0.87993 0.96537 1.68350 1.09559 1.28783 1.06586 1.20396 1.00200 0.88856 1.05577 0.92644 0.95380 0.95367 0.93001 0.93010 0.84859 0.85592 0.84999 0.85867 0.76433 0.79632 0.80310 0.80167 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.65 5.34 -27.89 -0.15 0.50 16 10 C 0.06 1.32 4.68 37.16 0.17 1.49 16 11 O -0.31 -6.08 10.13 -19.44 -0.20 -6.28 16 12 C 0.14 2.25 6.68 -39.28 -0.26 1.98 16 13 C -0.19 -2.77 9.03 -39.34 -0.36 -3.13 16 14 C -0.09 -1.09 10.02 -39.67 -0.40 -1.49 16 15 C -0.12 -1.58 9.58 -39.13 -0.37 -1.95 16 16 C -0.03 -0.37 5.87 -105.07 -0.62 -0.98 16 17 C 0.13 1.37 10.75 -14.65 -0.16 1.21 16 18 N -0.24 -2.82 10.15 32.16 0.33 -2.50 16 19 N -0.57 -5.72 6.25 30.59 0.19 -5.53 16 20 C 0.60 6.47 7.93 -12.23 -0.10 6.37 16 21 O -0.49 -6.80 16.69 5.31 0.09 -6.71 16 22 C 0.03 0.26 6.75 -82.85 -0.56 -0.30 16 23 C 0.12 0.87 10.77 -16.99 -0.18 0.69 16 24 N -0.44 -2.96 10.49 -12.70 -0.13 -3.09 16 25 C 0.08 0.29 11.23 -17.24 -0.19 0.10 16 26 C 0.05 0.20 11.22 -17.38 -0.20 0.00 16 27 N -0.41 -2.79 9.71 -9.62 -0.09 -2.88 16 28 C -0.13 -1.74 9.73 -38.99 -0.38 -2.12 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 33 H 0.05 1.01 7.65 -51.93 -0.40 0.61 16 34 H 0.13 1.90 6.28 -52.49 -0.33 1.57 16 35 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.13 1.63 7.55 -52.49 -0.40 1.23 16 37 H 0.12 0.87 8.02 -52.49 -0.42 0.45 16 38 H 0.40 3.00 8.00 -182.60 -1.46 1.53 16 39 H 0.19 1.23 7.65 -52.48 -0.40 0.82 16 40 H 0.18 0.01 8.06 -52.48 -0.42 -0.41 16 41 H 0.18 0.02 8.06 -52.49 -0.42 -0.40 16 42 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -34.21 379.10 -8.43 -42.63 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.88 Total: -1.24 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -4.16 Total: -10.77 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 1.03 Total: -39.31 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.11 Total: -12.98 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.21 -8.43 -42.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726737744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.574 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds