Wall clock time and date at job start Tue Mar 31 2020 23:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47466 * 72.02626 * 3 2 1 5 5 N 1.46493 * 109.47542 * 179.97438 * 4 3 2 6 6 C 1.46506 * 120.00025 * 269.99840 * 5 4 3 7 7 C 1.50695 * 109.47157 * 269.99603 * 6 5 4 8 8 H 1.08005 * 120.00082 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00429 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00702 * 180.02562 * 9 7 6 11 11 Si 1.86810 * 119.99550 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.46857 * 89.99913 * 11 9 7 13 13 H 1.48497 * 109.46879 * 209.99747 * 11 9 7 14 14 H 1.48499 * 109.46902 * 329.99701 * 11 9 7 15 15 C 1.34778 * 120.00186 * 89.99576 * 5 4 3 16 16 O 1.21284 * 120.00142 * 180.02562 * 15 5 4 17 17 C 1.50696 * 119.99934 * 0.02562 * 15 5 4 18 18 O 1.45201 * 109.47375 * 179.97438 * 17 15 5 19 19 C 1.34229 * 117.00156 * 179.97438 * 18 17 15 20 20 O 1.20821 * 120.00096 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99799 * 180.02562 * 19 18 17 22 22 C 1.52575 * 109.22620 * 58.76797 * 21 19 18 23 23 C 1.53102 * 109.95374 * 190.99618 * 22 21 19 24 24 S 1.81739 * 108.84117 * 296.97150 * 23 22 21 25 25 C 1.81751 * 102.22279 * 53.26834 * 24 23 22 26 26 C 1.52586 * 109.22520 * 180.02562 * 21 19 18 27 27 H 1.08998 * 109.47236 * 312.02033 * 3 2 1 28 28 H 1.09010 * 109.46549 * 192.02314 * 3 2 1 29 29 H 1.08998 * 109.47377 * 59.99494 * 4 3 2 30 30 H 1.09006 * 109.46658 * 299.99806 * 4 3 2 31 31 H 1.09002 * 109.46878 * 29.99615 * 6 5 4 32 32 H 1.09004 * 109.47031 * 149.99524 * 6 5 4 33 33 H 0.96998 * 120.00253 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.47484 * 60.00412 * 17 15 5 35 35 H 1.08998 * 109.47758 * 300.00155 * 17 15 5 36 36 H 1.09004 * 109.18773 * 299.38242 * 21 19 18 37 37 H 1.09000 * 109.39151 * 311.13974 * 22 21 19 38 38 H 1.09004 * 109.39609 * 70.84610 * 22 21 19 39 39 H 1.09003 * 109.57550 * 177.16316 * 23 22 21 40 40 H 1.08997 * 109.57619 * 56.78199 * 23 22 21 41 41 H 1.08999 * 109.57590 * 186.93240 * 25 24 23 42 42 H 1.08992 * 109.57373 * 66.53609 * 25 24 23 43 43 H 1.09003 * 109.38723 * 289.15333 * 26 21 19 44 44 H 1.09001 * 109.38828 * 48.85192 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.4442 -1.3720 5 7 4.5832 -0.4430 -1.3722 6 6 5.3147 0.7644 -1.7641 7 6 5.5657 0.7397 -3.2497 8 1 5.2151 -0.0920 -3.8429 9 6 6.2421 1.7792 -3.8521 10 7 6.4608 1.7580 -5.1487 11 14 6.8479 3.2181 -2.8262 12 1 8.2217 2.9348 -2.3389 13 1 6.8616 4.4481 -3.6582 14 1 5.9419 3.4152 -1.6662 15 6 5.2581 -1.5525 -1.0119 16 8 6.4710 -1.5514 -1.0116 17 6 4.5058 -2.7947 -0.6093 18 8 5.4502 -3.8437 -0.2691 19 6 4.9382 -5.0239 0.1139 20 8 3.7406 -5.1756 0.1629 21 6 5.8573 -6.1598 0.4829 22 6 6.7555 -5.7248 1.6370 23 6 7.8715 -6.7518 1.8464 24 16 7.1262 -8.3401 2.3205 25 6 5.9180 -8.6106 0.9899 26 6 5.0219 -7.3745 0.8765 27 1 2.9717 -0.6871 0.7634 28 1 2.9708 1.0061 0.2141 29 1 2.7546 0.2435 -2.1354 30 1 2.7554 -1.4496 -1.5861 31 1 4.7248 1.6451 -1.5098 32 1 6.2671 0.7999 -1.2351 33 1 6.9369 2.4892 -5.5723 34 1 3.8796 -3.1249 -1.4382 35 1 3.8787 -2.5757 0.2549 36 1 6.4763 -6.4139 -0.3776 37 1 7.1953 -4.7543 1.4074 38 1 6.1617 -5.6450 2.5476 39 1 8.5382 -6.4103 2.6382 40 1 8.4337 -6.8740 0.9206 41 1 5.3082 -9.4836 1.2223 42 1 6.4421 -8.7690 0.0475 43 1 4.5410 -7.1873 1.8366 44 1 4.2581 -7.5493 0.1187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735932010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:01 Heat of formation + Delta-G solvation = -118.376051 kcal Electronic energy + Delta-G solvation = -27053.992433 eV Core-core repulsion = 23096.983686 eV Total energy + Delta-G solvation = -3957.008747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.95641 -40.73930 -38.25764 -37.95127 -37.19812 -36.74463 -34.82719 -32.55933 -32.42564 -31.13489 -29.58266 -28.34682 -25.31394 -24.49725 -24.04750 -23.28478 -21.26925 -20.27234 -19.22955 -18.99912 -18.55855 -18.17936 -17.91783 -17.59493 -17.44080 -16.84059 -16.25383 -15.83985 -15.73081 -15.57194 -15.06296 -14.92938 -14.72251 -14.56652 -14.44967 -14.11102 -13.94992 -13.85518 -13.75773 -13.64212 -13.60516 -13.44447 -13.23377 -13.03931 -12.71507 -12.46867 -12.39749 -12.16826 -12.09731 -11.96492 -11.76073 -11.68592 -11.60894 -11.45075 -10.78370 -10.75744 -10.65594 -9.57341 -8.68893 -8.27429 -6.32933 0.80564 1.03385 1.20536 1.41249 1.44856 1.52078 1.55422 1.58005 1.77044 1.83548 2.28612 2.37563 3.01660 3.10290 3.37975 3.52472 3.53466 3.64259 3.85727 3.91105 3.97343 4.04630 4.07420 4.13057 4.22330 4.32535 4.42753 4.52405 4.58537 4.76422 4.77459 4.83955 4.86053 4.90294 4.96691 5.04970 5.06019 5.12363 5.25819 5.49738 5.55067 6.26511 6.46224 6.58749 6.61790 6.70794 7.19260 7.34004 8.89392 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.002707 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.793060 B =10340.820376 C =12007.192105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.243 3.757 3 C -0.039 4.039 4 C 0.106 3.894 5 N -0.587 5.587 6 C 0.223 3.777 7 C -0.536 4.536 8 H 0.030 0.970 9 C 0.009 3.991 10 N -0.950 5.950 11 Si 0.944 3.056 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.223 1.223 15 C 0.509 3.491 16 O -0.563 6.563 17 C 0.052 3.948 18 O -0.344 6.344 19 C 0.470 3.530 20 O -0.523 6.523 21 C -0.083 4.083 22 C -0.112 4.112 23 C -0.069 4.069 24 S -0.305 6.305 25 C -0.069 4.069 26 C -0.102 4.102 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.266 0.734 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.067 -15.799 16.670 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.074 4.074 3 C -0.079 4.079 4 C -0.019 4.019 5 N -0.318 5.318 6 C 0.101 3.899 7 C -0.575 4.575 8 H 0.048 0.952 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.766 3.234 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.146 1.146 15 C 0.296 3.704 16 O -0.441 6.441 17 C -0.025 4.025 18 O -0.259 6.259 19 C 0.314 3.686 20 O -0.412 6.412 21 C -0.102 4.102 22 C -0.151 4.151 23 C -0.217 4.217 24 S -0.080 6.080 25 C -0.217 4.217 26 C -0.141 4.141 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.139 0.861 40 H 0.116 0.884 41 H 0.141 0.859 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.186 -16.363 17.422 24.113 hybrid contribution 0.469 1.534 -1.640 2.294 sum -2.717 -14.829 15.782 21.826 Atomic orbital electron populations 1.81276 1.14626 1.10899 1.09989 1.29178 0.95030 0.91428 0.91764 1.19874 0.79988 1.08154 0.99927 1.21643 0.78515 1.04760 0.96950 1.47732 1.06893 1.12341 1.64871 1.19508 0.93399 0.83815 0.93158 1.21607 1.36585 1.05907 0.93376 0.95195 1.25860 0.95458 1.01608 0.95945 1.70060 1.42914 1.34152 1.11861 0.85779 0.79879 0.77831 0.79863 1.20327 1.21161 1.14587 1.20434 0.87705 0.84680 0.77598 1.90714 1.15768 1.83615 1.54047 1.22943 0.90560 0.84556 1.04446 1.86563 1.40717 1.21664 1.76970 1.24110 0.88795 0.83143 0.72557 1.90664 1.17565 1.82737 1.50233 1.21188 0.96416 0.90597 1.02016 1.21697 0.96183 0.99846 0.97422 1.23462 0.99344 0.92332 1.06552 1.87140 1.49856 1.30676 1.40293 1.23474 0.97893 1.01009 0.99305 1.21591 0.97389 0.91131 1.04032 0.84579 0.84628 0.88867 0.88266 0.91446 0.95175 0.92502 0.87057 0.84994 0.85840 0.89187 0.89795 0.86133 0.88447 0.85913 0.88310 0.90181 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.03 18.54 20.01 0.37 -12.66 16 2 C 0.24 4.78 15.43 89.44 1.38 6.17 16 3 C -0.04 -0.55 6.03 28.79 0.17 -0.37 16 4 C 0.11 2.27 5.17 86.38 0.45 2.72 16 5 N -0.59 -18.64 2.46 -826.17 -2.03 -20.67 16 6 C 0.22 9.02 4.23 85.63 0.36 9.38 16 7 C -0.54 -28.56 9.94 25.60 0.25 -28.31 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 9 C 0.01 0.50 5.47 84.65 0.46 0.96 16 10 N -0.95 -57.67 13.96 21.45 0.30 -57.37 16 11 Si 0.94 40.68 27.47 68.60 1.88 42.56 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.22 -8.08 6.54 99.48 0.65 -7.43 16 15 C 0.51 17.03 7.75 87.66 0.68 17.71 16 16 O -0.56 -24.83 16.08 15.76 0.25 -24.58 16 17 C 0.05 1.24 4.50 71.23 0.32 1.56 16 18 O -0.34 -8.95 9.39 -45.05 -0.42 -9.37 16 19 C 0.47 10.22 7.24 71.24 0.52 10.74 16 20 O -0.52 -12.99 15.51 21.98 0.34 -12.65 16 21 C -0.08 -1.28 2.36 -11.82 -0.03 -1.31 16 22 C -0.11 -1.58 5.03 30.49 0.15 -1.42 16 23 C -0.07 -0.84 6.45 72.02 0.46 -0.38 16 24 S -0.31 -4.50 22.33 -56.49 -1.26 -5.76 16 25 C -0.07 -0.75 6.45 72.01 0.46 -0.29 16 26 C -0.10 -1.36 4.51 30.49 0.14 -1.22 16 27 H 0.14 1.23 7.22 -2.39 -0.02 1.21 16 28 H 0.14 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.09 2.23 8.07 -2.39 -0.02 2.21 16 30 H 0.10 1.75 6.44 -2.38 -0.02 1.73 16 31 H 0.07 2.34 7.13 -2.39 -0.02 2.33 16 32 H 0.03 1.32 6.85 -2.39 -0.02 1.30 16 33 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.11 2.43 7.40 -2.39 -0.02 2.41 16 35 H 0.13 2.20 7.18 -2.39 -0.02 2.19 16 36 H 0.12 1.65 8.08 -2.38 -0.02 1.63 16 37 H 0.09 1.44 7.78 -2.39 -0.02 1.42 16 38 H 0.08 1.18 8.06 -2.39 -0.02 1.16 16 39 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 43 H 0.08 1.18 8.06 -2.39 -0.02 1.16 16 44 H 0.09 1.22 7.69 -2.39 -0.02 1.20 16 Total: -1.00 -79.26 384.08 6.18 -73.08 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.96 Total: 11.49 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 5.79 Total: 15.93 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -1.36 Total: -90.70 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: 0.17 Total: -46.60 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.88 Total: 42.56 kcal Atomic # 16 Polarization: -4.50 SS G_CDS: -1.26 Total: -5.76 kcal Total: -79.26 6.18 -73.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735932010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.293 kcal (2) G-P(sol) polarization free energy of solvation -79.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds