Wall clock time and date at job start Tue Mar 31 2020 23:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 110.47192 * 2 1 4 4 C 1.51178 * 110.52741 * 122.64591 * 2 1 3 5 5 C 1.37237 * 132.73965 * 298.62241 * 4 2 1 6 6 C 1.39860 * 119.79214 * 179.97438 * 5 4 2 7 7 C 1.47579 * 120.24153 * 180.02562 * 6 5 4 8 8 O 1.21613 * 119.99895 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99797 * 180.27691 * 7 6 5 10 10 C 1.40537 * 119.99531 * 179.72612 * 9 7 6 11 11 C 1.40660 * 126.08922 * 359.69539 * 10 9 7 12 12 N 1.30902 * 108.38826 * 179.81805 * 11 10 9 13 13 N 1.40066 * 108.41363 * 0.43700 * 12 11 10 14 14 C 1.37319 * 126.06880 * 179.69969 * 13 12 11 15 15 H 1.07999 * 119.99614 * 180.02562 * 14 13 12 16 16 C 1.38986 * 119.99916 * 0.02681 * 14 13 12 17 17 N 1.31286 * 120.00287 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99777 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47156 * 59.99877 * 18 16 14 20 20 H 1.48502 * 109.47389 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47397 * 300.00076 * 18 16 14 22 22 C 1.35698 * 126.08150 * 180.02562 * 10 9 7 23 23 C 1.39776 * 119.52062 * 0.28247 * 6 5 4 24 24 C 1.37476 * 120.22310 * 359.43691 * 23 6 5 25 25 C 1.39193 * 106.28982 * 118.62367 * 4 2 1 26 26 N 1.39105 * 110.20894 * 0.02562 * 25 4 2 27 27 C 1.34333 * 112.37830 * 359.97438 * 26 25 4 28 28 O 1.21283 * 126.43531 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.46617 * 297.35571 * 1 2 3 30 30 H 1.09003 * 109.47123 * 57.35612 * 1 2 3 31 31 H 1.08995 * 109.46837 * 177.35976 * 1 2 3 32 32 H 1.08995 * 109.47640 * 182.63977 * 3 2 1 33 33 H 1.09000 * 109.47279 * 302.64685 * 3 2 1 34 34 H 1.09001 * 109.46526 * 62.63803 * 3 2 1 35 35 H 1.08003 * 120.10609 * 359.97438 * 5 4 2 36 36 H 0.97000 * 120.00483 * 359.73149 * 9 7 6 37 37 H 1.08006 * 125.80244 * 359.97438 * 11 10 9 38 38 H 0.96998 * 120.00530 * 180.02562 * 17 16 14 39 39 H 1.07998 * 126.25113 * 359.97438 * 22 10 9 40 40 H 1.08002 * 119.88769 * 179.70267 * 23 6 5 41 41 H 1.08006 * 119.83497 * 180.28093 * 24 23 6 42 42 H 0.97000 * 123.81022 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0651 1.4334 0.0000 4 6 2.0601 -0.7637 1.1921 5 6 1.9346 -0.5806 2.5464 6 6 2.5527 -1.4728 3.4285 7 6 2.4236 -1.2856 4.8867 8 8 1.7777 -0.3532 5.3252 9 7 3.0260 -2.1450 5.7323 10 6 2.9078 -1.9634 7.1209 11 6 2.2015 -0.9311 7.7643 12 7 2.3164 -1.0961 9.0578 13 7 3.1056 -2.2295 9.2909 14 6 3.4603 -2.7289 10.5199 15 1 4.0761 -3.6136 10.5860 16 6 3.0269 -2.0957 11.6787 17 7 2.2787 -1.0199 11.5984 18 14 3.5101 -2.7745 13.3505 19 1 4.9899 -2.7769 13.4750 20 1 2.9254 -1.9239 14.4181 21 1 2.9997 -4.1623 13.4877 22 6 3.4602 -2.7491 8.0795 23 6 3.2980 -2.5399 2.9191 24 6 3.4127 -2.7176 1.5607 25 6 2.7965 -1.8274 0.6784 26 7 2.7760 -1.7987 -0.7122 27 6 2.0612 -0.7676 -1.1920 28 8 1.8758 -0.5015 -2.3607 29 1 -0.3632 0.4722 0.9128 30 1 -0.3633 0.5544 -0.8654 31 1 -0.3633 -1.0265 -0.0473 32 1 3.1539 1.4148 -0.0473 33 1 1.6729 1.9677 -0.8653 34 1 1.7497 1.9389 0.9127 35 1 1.3602 0.2498 2.9298 36 1 3.5410 -2.8888 5.3826 37 1 1.6550 -0.1387 7.2744 38 1 1.9764 -0.5777 12.4071 39 1 4.0687 -3.6259 7.9142 40 1 3.7817 -3.2296 3.5949 41 1 3.9864 -3.5469 1.1739 42 1 3.2265 -2.4502 -1.2722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769156835.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:56 Heat of formation + Delta-G solvation = 26.864722 kcal Electronic energy + Delta-G solvation = -27883.293251 eV Core-core repulsion = 23829.431416 eV Total energy + Delta-G solvation = -4053.861835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.92630 -41.69854 -40.47356 -39.16209 -36.75249 -35.97753 -35.72303 -34.93941 -32.25044 -31.45037 -30.82421 -29.24543 -28.38831 -26.83705 -26.11946 -24.82312 -22.88699 -22.76086 -21.91755 -21.14526 -20.73527 -19.35968 -18.89114 -18.50405 -17.75626 -17.35478 -16.85164 -16.76319 -16.37522 -16.08099 -15.78034 -15.54144 -15.18588 -15.06269 -14.88520 -14.82210 -14.75290 -14.28418 -13.98930 -13.75311 -13.45824 -13.38114 -13.27384 -13.10108 -12.91758 -12.85410 -12.83093 -12.38062 -12.12550 -11.99471 -11.76715 -11.72261 -11.16503 -10.97674 -10.81851 -10.71680 -10.06858 -9.99682 -9.21486 -8.47003 -8.43938 -6.20795 -0.34869 0.28426 1.11704 1.33708 1.41902 1.58094 1.70276 1.85274 1.95884 2.05997 2.29255 2.48791 2.88134 2.90612 2.98676 3.12732 3.16716 3.70008 3.85199 3.88725 3.95842 4.12878 4.26006 4.38507 4.49163 4.65071 4.66587 4.67964 4.73034 4.75365 4.95035 4.99794 5.02553 5.06507 5.12376 5.16503 5.17292 5.31610 5.34589 5.39311 5.50252 5.67861 5.83730 5.99146 6.35236 6.76794 6.78064 6.82257 7.40550 7.50487 7.71978 8.55227 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.035623 B = 0.002005 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.819919 B =13958.622908 C =14556.617651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.054 4.054 3 C -0.127 4.127 4 C -0.146 4.146 5 C -0.010 4.010 6 C -0.155 4.155 7 C 0.543 3.457 8 O -0.578 6.578 9 N -0.608 5.608 10 C -0.044 4.044 11 C -0.060 4.060 12 N -0.311 5.311 13 N -0.169 5.169 14 C -0.353 4.353 15 H 0.142 0.858 16 C -0.008 4.008 17 N -0.826 5.826 18 Si 1.019 2.981 19 H -0.253 1.253 20 H -0.280 1.280 21 H -0.253 1.253 22 C -0.078 4.078 23 C -0.042 4.042 24 C -0.128 4.128 25 C 0.164 3.836 26 N -0.645 5.645 27 C 0.537 3.463 28 O -0.527 6.527 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.130 0.870 36 H 0.419 0.581 37 H 0.167 0.833 38 H 0.276 0.724 39 H 0.191 0.809 40 H 0.164 0.836 41 H 0.172 0.828 42 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.137 -6.055 -21.922 23.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.058 4.058 3 C -0.184 4.184 4 C -0.149 4.149 5 C -0.029 4.029 6 C -0.160 4.160 7 C 0.333 3.667 8 O -0.459 6.459 9 N -0.253 5.253 10 C -0.150 4.150 11 C -0.235 4.235 12 N -0.143 5.143 13 N 0.062 4.938 14 C -0.484 4.484 15 H 0.159 0.841 16 C -0.219 4.219 17 N -0.454 5.454 18 Si 0.837 3.163 19 H -0.177 1.177 20 H -0.205 1.205 21 H -0.177 1.177 22 C -0.229 4.229 23 C -0.061 4.061 24 C -0.148 4.148 25 C 0.065 3.935 26 N -0.288 5.288 27 C 0.325 3.675 28 O -0.403 6.403 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.148 0.852 36 H 0.258 0.742 37 H 0.184 0.816 38 H 0.085 0.915 39 H 0.208 0.792 40 H 0.182 0.818 41 H 0.190 0.810 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.104 -4.560 -21.023 21.735 hybrid contribution 0.524 -0.760 -0.401 1.006 sum 3.628 -5.320 -21.424 22.371 Atomic orbital electron populations 1.21693 0.89500 1.03069 1.04194 1.20186 0.99023 0.97128 0.89442 1.21690 1.01219 0.91347 1.04193 1.19600 1.03560 0.98484 0.93287 1.20171 0.95236 0.97361 0.90180 1.19549 1.05593 1.00391 0.90444 1.18585 0.79321 0.81826 0.86984 1.90666 1.43148 1.33270 1.78815 1.42275 1.51058 1.29820 1.02145 1.17293 1.12133 1.01883 0.83664 1.24196 1.05922 1.02026 0.91341 1.78155 1.16417 1.04747 1.15020 1.44838 1.28342 1.15576 1.05023 1.20573 1.34356 1.13544 0.79945 0.84055 1.26876 0.94778 0.95291 1.04985 1.70391 1.27413 1.16416 1.31133 0.84661 0.79435 0.78570 0.73598 1.17711 1.20513 1.17694 1.22027 1.11590 1.04934 0.84309 1.21333 0.94302 0.94910 0.95575 1.20588 1.02755 1.00541 0.90940 1.18492 0.96245 0.95794 0.82924 1.43524 1.50283 1.29338 1.05638 1.20721 0.76850 0.80530 0.89427 1.90781 1.59826 1.70525 1.19184 0.89950 0.90601 0.92188 0.92184 0.90603 0.89950 0.85191 0.74198 0.81569 0.91467 0.79189 0.81847 0.81010 0.73196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.64 71.98 0.62 -1.34 16 2 C -0.05 -0.92 1.01 -53.30 -0.05 -0.98 16 3 C -0.13 -1.96 8.64 71.98 0.62 -1.34 16 4 C -0.15 -2.63 4.98 -19.72 -0.10 -2.73 16 5 C -0.01 -0.22 9.58 22.43 0.21 0.00 16 6 C -0.16 -3.59 5.88 -20.05 -0.12 -3.71 16 7 C 0.54 18.12 7.74 86.71 0.67 18.79 16 8 O -0.58 -24.80 13.50 -4.07 -0.05 -24.86 16 9 N -0.61 -19.66 5.42 -306.73 -1.66 -21.32 16 10 C -0.04 -1.93 6.90 37.75 0.26 -1.67 16 11 C -0.06 -3.21 10.85 85.42 0.93 -2.29 16 12 N -0.31 -18.67 10.39 -56.46 -0.59 -19.26 16 13 N -0.17 -9.22 3.74 -190.00 -0.71 -9.93 16 14 C -0.35 -18.38 10.25 84.01 0.86 -17.52 16 15 H 0.14 6.29 7.83 -2.91 -0.02 6.27 16 16 C -0.01 -0.40 5.50 84.95 0.47 0.06 16 17 N -0.83 -47.54 11.81 21.66 0.26 -47.28 16 18 Si 1.02 38.09 29.55 68.60 2.03 40.12 16 19 H -0.25 -8.81 7.11 99.48 0.71 -8.11 16 20 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 21 H -0.25 -8.80 7.11 99.48 0.71 -8.10 16 22 C -0.08 -3.48 11.49 83.38 0.96 -2.53 16 23 C -0.04 -0.60 9.51 22.46 0.21 -0.39 16 24 C -0.13 -1.36 10.06 22.44 0.23 -1.14 16 25 C 0.16 2.35 7.11 38.56 0.27 2.62 16 26 N -0.64 -8.58 5.85 -303.13 -1.77 -10.35 16 27 C 0.54 10.05 7.37 87.95 0.65 10.70 16 28 O -0.53 -13.09 18.03 -3.04 -0.05 -13.15 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.13 3.16 7.66 -2.91 -0.02 3.14 16 36 H 0.42 9.16 6.86 -92.71 -0.64 8.52 16 37 H 0.17 9.11 5.91 -2.91 -0.02 9.09 16 38 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 39 H 0.19 6.45 8.06 -2.91 -0.02 6.43 16 40 H 0.16 1.40 6.40 -2.91 -0.02 1.39 16 41 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.43 3.40 8.96 -92.71 -0.83 2.57 16 Total: -1.00 -81.07 362.03 3.78 -77.29 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: -0.36 Total: 32.20 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 6.70 Total: -3.46 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -4.48 Total: -108.14 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.11 Total: -38.01 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -81.07 3.78 -77.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769156835.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.156 kcal (2) G-P(sol) polarization free energy of solvation -81.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds