Wall clock time and date at job start Tue Mar 31 2020 23:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37860 * 119.86095 * 2 1 4 4 C 1.38266 * 120.23130 * 179.97438 * 3 2 1 5 5 C 1.38289 * 119.83565 * 359.95741 * 4 3 2 6 6 C 1.38116 * 120.15155 * 0.09490 * 5 4 3 7 7 C 1.38658 * 120.47283 * 359.90764 * 6 5 4 8 8 N 1.39631 * 111.63244 * 180.02562 * 7 6 5 9 9 C 1.34777 * 124.95739 * 180.02562 * 8 7 6 10 10 O 1.21397 * 119.99681 * 353.05269 * 9 8 7 11 11 C 1.49206 * 120.00366 * 173.04864 * 9 8 7 12 12 O 1.21418 * 119.99623 * 0.02562 * 11 9 8 13 13 N 1.34778 * 120.00543 * 179.97438 * 11 9 8 14 14 C 1.40295 * 120.00152 * 179.97438 * 13 11 9 15 15 C 1.40718 * 126.09976 * 359.69521 * 14 13 11 16 16 N 1.30877 * 108.37686 * 179.84880 * 15 14 13 17 17 N 1.40069 * 108.43626 * 0.40737 * 16 15 14 18 18 C 1.37288 * 126.05747 * 179.73672 * 17 16 15 19 19 H 1.08001 * 120.00214 * 180.02562 * 18 17 16 20 20 C 1.39005 * 120.00052 * 0.02562 * 18 17 16 21 21 N 1.31280 * 120.00170 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99903 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47159 * 90.00019 * 22 20 18 24 24 H 1.48507 * 109.46821 * 209.99921 * 22 20 18 25 25 H 1.48497 * 109.46979 * 329.99835 * 22 20 18 26 26 C 1.35783 * 126.10181 * 180.02562 * 14 13 11 27 27 C 1.46526 * 110.08220 * 359.97438 * 8 7 6 28 28 C 1.51219 * 130.99590 * 179.97438 * 6 5 4 29 29 H 1.09002 * 109.47816 * 245.00425 * 1 2 3 30 30 H 1.09005 * 109.47331 * 5.01319 * 1 2 3 31 31 H 1.09004 * 109.47169 * 125.00582 * 1 2 3 32 32 H 1.08003 * 119.88759 * 359.97071 * 3 2 1 33 33 H 1.07994 * 120.08426 * 180.02562 * 4 3 2 34 34 H 1.07997 * 119.91922 * 180.02562 * 5 4 3 35 35 H 0.97001 * 119.99616 * 0.02562 * 13 11 9 36 36 H 1.07997 * 125.81487 * 0.02562 * 15 14 13 37 37 H 0.97005 * 120.00021 * 179.97438 * 21 20 18 38 38 H 1.08006 * 126.24973 * 359.96429 * 26 14 13 39 39 H 1.09006 * 110.29883 * 241.06863 * 27 8 7 40 40 H 1.09003 * 110.29580 * 118.93212 * 27 8 7 41 41 H 1.08998 * 110.41529 * 61.19195 * 28 6 5 42 42 H 1.09003 * 110.41972 * 298.73386 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.1956 0.0000 4 6 3.5760 1.2045 0.0005 5 6 4.2718 0.0094 0.0020 6 6 3.5887 -1.1910 0.0009 7 6 2.2022 -1.2111 0.0003 8 7 1.7064 -2.5164 -0.0002 9 6 0.3995 -2.8460 -0.0013 10 8 -0.4443 -1.9825 0.1252 11 6 -0.0101 -4.2721 -0.1582 12 8 0.8339 -5.1358 -0.2843 13 7 -1.3170 -4.6018 -0.1588 14 6 -1.7021 -5.9427 -0.3068 15 6 -0.8371 -7.0407 -0.4689 16 7 -1.5620 -8.1256 -0.5710 17 7 -2.9129 -7.7650 -0.4880 18 6 -3.9837 -8.6214 -0.5584 19 1 -4.9896 -8.2356 -0.4831 20 6 -3.7731 -9.9851 -0.7266 21 7 -2.5504 -10.4541 -0.8187 22 14 -5.2300 -11.1504 -0.8217 23 1 -5.6574 -11.2942 -2.2366 24 1 -4.8373 -12.4786 -0.2858 25 1 -6.3534 -10.6049 -0.0182 26 6 -2.9762 -6.4118 -0.3254 27 6 2.8142 -3.4755 -0.0006 28 6 4.0900 -2.6177 0.0015 29 1 -0.3635 -0.4342 0.9314 30 1 -0.3634 1.0238 -0.0898 31 1 -0.3634 -0.5895 -0.8418 32 1 1.6493 2.1285 -0.0005 33 1 4.1113 2.1424 0.0010 34 1 5.3517 0.0148 0.0028 35 1 -1.9912 -3.9119 -0.0576 36 1 0.2415 -6.9963 -0.5005 37 1 -2.4034 -11.4058 -0.9357 38 1 -3.8755 -5.8216 -0.2286 39 1 2.7763 -4.0966 -0.8956 40 1 2.7763 -4.0972 0.8939 41 1 4.6792 -2.8133 0.8974 42 1 4.6807 -2.8136 -0.8934 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781984280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:30 Heat of formation + Delta-G solvation = 78.339245 kcal Electronic energy + Delta-G solvation = -28517.834751 eV Core-core repulsion = 24466.205019 eV Total energy + Delta-G solvation = -4051.629732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.69782 -41.72142 -40.51787 -39.31357 -37.79025 -36.08000 -35.06572 -34.05020 -32.35148 -32.11507 -30.21707 -29.89595 -27.77815 -27.36589 -26.10585 -24.05145 -23.27996 -22.71910 -22.24443 -21.39072 -20.55048 -19.38754 -19.17347 -18.32110 -17.81957 -17.46777 -16.96659 -16.89325 -16.22588 -16.15037 -15.96953 -15.57839 -15.44225 -15.27666 -15.03769 -14.88733 -14.31064 -14.14148 -13.96539 -13.57533 -13.52469 -13.40933 -13.13789 -13.07525 -12.93086 -12.86507 -12.79900 -12.38675 -12.09789 -12.00029 -11.82159 -11.58236 -11.19516 -11.07892 -10.88417 -10.16017 -10.05600 -9.53613 -8.75257 -8.62617 -8.50416 -6.28147 -0.20805 0.40214 0.66589 1.07855 1.28320 1.40432 1.57702 1.69826 1.96625 2.07886 2.31217 2.47590 2.77546 2.83023 3.06193 3.32814 3.52084 3.61443 3.97597 4.05758 4.16131 4.30448 4.36806 4.39202 4.49592 4.51411 4.71990 4.84504 4.90079 4.92358 4.96087 4.96299 4.98637 5.07758 5.08492 5.20973 5.28393 5.35159 5.51004 5.54150 5.65250 5.89307 5.99982 6.01153 6.18268 6.35570 6.63281 6.71557 7.00908 7.39222 7.60860 8.48726 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.032780 B = 0.002242 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.967872 B =12484.152631 C =13300.830235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.114 4.114 3 C -0.104 4.104 4 C -0.127 4.127 5 C -0.088 4.088 6 C -0.131 4.131 7 C 0.102 3.898 8 N -0.531 5.531 9 C 0.510 3.490 10 O -0.492 6.492 11 C 0.487 3.513 12 O -0.534 6.534 13 N -0.579 5.579 14 C -0.056 4.056 15 C -0.046 4.046 16 N -0.307 5.307 17 N -0.163 5.163 18 C -0.353 4.353 19 H 0.142 0.858 20 C -0.005 4.005 21 N -0.820 5.820 22 Si 1.019 2.981 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.245 1.245 26 C -0.075 4.075 27 C 0.104 3.896 28 C -0.081 4.081 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.423 0.577 36 H 0.177 0.823 37 H 0.278 0.722 38 H 0.188 0.812 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.474 20.770 1.869 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C -0.122 4.122 4 C -0.146 4.146 5 C -0.106 4.106 6 C -0.133 4.133 7 C 0.009 3.991 8 N -0.255 5.255 9 C 0.296 3.704 10 O -0.368 6.368 11 C 0.268 3.732 12 O -0.411 6.411 13 N -0.224 5.224 14 C -0.162 4.162 15 C -0.222 4.222 16 N -0.139 5.139 17 N 0.069 4.931 18 C -0.484 4.484 19 H 0.159 0.841 20 C -0.217 4.217 21 N -0.448 5.448 22 Si 0.838 3.162 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.168 1.168 26 C -0.226 4.226 27 C -0.017 4.017 28 C -0.118 4.118 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.165 0.835 33 H 0.176 0.824 34 H 0.174 0.826 35 H 0.261 0.739 36 H 0.193 0.807 37 H 0.088 0.912 38 H 0.205 0.795 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.131 0.869 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.644 19.039 1.681 21.877 hybrid contribution -0.951 0.228 0.052 0.979 sum 9.693 19.266 1.733 21.637 Atomic orbital electron populations 1.21170 0.90009 0.99299 1.03358 1.19866 0.97176 0.91209 1.03424 1.21113 0.95111 0.96504 0.99489 1.21458 0.93692 0.99069 1.00367 1.20757 1.01246 0.89686 0.98887 1.20383 0.91444 0.96801 1.04704 1.18616 0.93783 0.84092 1.02594 1.45428 1.05580 1.06848 1.67625 1.19985 0.83687 0.88568 0.78134 1.91253 1.52449 1.46129 1.46990 1.20041 0.83245 0.89316 0.80572 1.90635 1.50710 1.50501 1.49301 1.41998 1.06919 1.06516 1.66984 1.17256 0.92440 0.83944 1.22564 1.24254 1.00364 0.89581 1.07990 1.78166 0.86771 1.21587 1.27379 1.44842 1.04964 1.04054 1.39191 1.20651 0.86020 0.88716 1.52985 0.84111 1.26884 1.01207 0.99571 0.94071 1.70372 1.22784 1.15340 1.36282 0.84588 0.76122 0.76020 0.79468 1.18870 1.20092 1.16805 1.21989 0.97768 0.85699 1.17135 1.22428 0.83660 0.91238 1.04399 1.21265 0.96136 0.88488 1.05895 0.91175 0.92872 0.91729 0.83550 0.82388 0.82644 0.73932 0.80651 0.91209 0.79549 0.89445 0.89743 0.86915 0.87067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.06 7.81 71.24 0.56 -1.51 16 2 C -0.11 -2.73 5.91 -19.61 -0.12 -2.85 16 3 C -0.10 -1.82 9.64 22.19 0.21 -1.60 16 4 C -0.13 -1.74 10.06 22.29 0.22 -1.51 16 5 C -0.09 -1.26 10.04 22.25 0.22 -1.04 16 6 C -0.13 -2.54 6.23 -19.63 -0.12 -2.66 16 7 C 0.10 2.59 6.60 38.34 0.25 2.85 16 8 N -0.53 -14.88 3.12 -631.30 -1.97 -16.85 16 9 C 0.51 16.07 7.83 87.19 0.68 16.75 16 10 O -0.49 -15.30 9.51 -3.39 -0.03 -15.33 16 11 C 0.49 17.62 7.81 87.19 0.68 18.30 16 12 O -0.53 -21.38 11.23 -3.46 -0.04 -21.41 16 13 N -0.58 -21.36 5.45 -305.42 -1.66 -23.02 16 14 C -0.06 -2.56 6.90 37.82 0.26 -2.29 16 15 C -0.05 -2.45 10.84 85.44 0.93 -1.52 16 16 N -0.31 -18.12 10.39 -56.44 -0.59 -18.71 16 17 N -0.16 -8.91 3.73 -189.98 -0.71 -9.62 16 18 C -0.35 -18.41 10.25 84.02 0.86 -17.55 16 19 H 0.14 6.38 7.83 -2.91 -0.02 6.35 16 20 C -0.01 -0.26 5.50 84.96 0.47 0.21 16 21 N -0.82 -46.45 11.81 21.66 0.26 -46.20 16 22 Si 1.02 37.96 29.55 68.60 2.03 39.99 16 23 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 24 H -0.28 -10.17 7.11 99.48 0.71 -9.46 16 25 H -0.24 -8.30 7.11 99.48 0.71 -7.60 16 26 C -0.07 -3.47 11.49 83.41 0.96 -2.51 16 27 C 0.10 2.46 5.70 86.62 0.49 2.95 16 28 C -0.08 -1.31 6.94 30.26 0.21 -1.10 16 29 H 0.07 1.97 6.33 -11.45 -0.07 1.90 16 30 H 0.05 1.08 7.87 -2.38 -0.02 1.06 16 31 H 0.06 1.85 6.11 -32.43 -0.20 1.66 16 32 H 0.15 1.87 7.94 -2.91 -0.02 1.85 16 33 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 34 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.42 13.02 8.29 -92.71 -0.77 12.26 16 36 H 0.18 9.04 5.92 -2.91 -0.02 9.02 16 37 H 0.28 14.44 8.31 -92.70 -0.77 13.67 16 38 H 0.19 6.89 8.06 -2.91 -0.02 6.87 16 39 H 0.09 2.24 7.28 -2.38 -0.02 2.22 16 40 H 0.08 2.06 7.95 -2.39 -0.02 2.04 16 41 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -72.28 349.93 4.14 -68.14 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: 0.08 Total: 38.10 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 6.77 Total: 4.91 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -4.68 Total: -114.39 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.07 Total: -36.74 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -72.28 4.14 -68.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781984280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.480 kcal (2) G-P(sol) polarization free energy of solvation -72.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds