Wall clock time and date at job start Tue Mar 31 2020 23:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00016 * 2 1 4 4 H 1.48500 * 109.47215 * 240.00034 * 3 2 1 5 5 H 1.48494 * 109.47525 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47448 * 120.00272 * 3 2 1 7 7 C 1.37878 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99335 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00311 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47488 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00320 * 180.02562 * 10 9 7 12 12 O 1.21580 * 119.99848 * 5.05878 * 11 10 9 13 13 N 1.34773 * 119.99924 * 185.05236 * 11 10 9 14 14 C 1.47172 * 120.99363 * 354.72159 * 13 11 10 15 15 C 1.53295 * 108.41328 * 129.50868 * 14 13 11 16 16 O 1.42955 * 109.22239 * 52.28193 * 15 14 13 17 17 C 1.42960 * 114.16975 * 297.41558 * 16 15 14 18 18 C 1.47151 * 120.98365 * 174.70075 * 13 11 10 19 19 H 1.08999 * 109.68435 * 110.74910 * 18 13 11 20 20 C 1.52999 * 109.67883 * 350.23404 * 18 13 11 21 21 C 1.53004 * 109.47200 * 182.87323 * 20 18 13 22 22 H 1.09002 * 109.47073 * 56.32687 * 21 20 18 23 23 O 1.42898 * 109.46870 * 296.32522 * 21 20 18 24 24 C 1.50696 * 109.47269 * 176.32171 * 21 20 18 25 25 C 1.33387 * 125.20798 * 265.00061 * 24 21 20 26 26 C 1.38421 * 114.92487 * 180.02562 * 25 24 21 27 27 C 1.33391 * 114.92131 * 0.02562 * 26 25 24 28 28 S 1.75885 * 109.59207 * 359.97438 * 27 26 25 29 29 H 0.96997 * 119.99440 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46858 * 60.00562 * 9 7 2 31 31 H 1.08996 * 109.47369 * 300.00679 * 9 7 2 32 32 H 0.97006 * 119.99484 * 359.97438 * 10 9 7 33 33 H 1.08998 * 109.68477 * 9.76271 * 14 13 11 34 34 H 1.08998 * 109.68172 * 249.24956 * 14 13 11 35 35 H 1.08998 * 109.50808 * 292.35471 * 15 14 13 36 36 H 1.08999 * 109.55118 * 172.23633 * 15 14 13 37 37 H 1.09004 * 109.51182 * 302.66523 * 17 16 15 38 38 H 1.09000 * 109.51703 * 182.50664 * 17 16 15 39 39 H 1.08992 * 109.47325 * 62.87493 * 20 18 13 40 40 H 1.09003 * 109.47199 * 302.87429 * 20 18 13 41 41 H 0.96693 * 113.99732 * 305.02497 * 23 21 20 42 42 H 1.08011 * 122.53759 * 0.02562 * 25 24 21 43 43 H 1.08004 * 122.53785 * 179.97438 * 26 25 24 44 44 H 1.07995 * 125.20114 * 179.73525 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5622 -5.1068 -0.0944 13 7 2.6252 -5.9063 0.1017 14 6 4.0774 -5.6677 0.0998 15 6 4.6898 -6.3990 1.2999 16 8 4.2709 -7.7657 1.2820 17 6 2.8590 -7.9469 1.4140 18 6 2.1528 -7.2949 0.2197 19 1 2.3917 -7.8427 -0.6919 20 6 0.6397 -7.3070 0.4464 21 6 0.1644 -8.7484 0.6398 22 1 0.7124 -9.2041 1.4645 23 8 0.4000 -9.4922 -0.5574 24 6 -1.3097 -8.7536 0.9526 25 6 -1.8357 -8.7829 2.1780 26 6 -3.2193 -8.7821 2.2190 27 6 -3.8170 -8.7527 1.0269 28 16 -2.5999 -8.7230 -0.2425 29 1 -0.4849 0.8401 0.0004 30 1 0.6241 -2.5566 -0.8904 31 1 0.6246 -2.5570 0.8896 32 1 3.1567 -3.4355 -0.0009 33 1 4.2740 -4.5988 0.1819 34 1 4.5111 -6.0508 -0.8239 35 1 4.3544 -5.9273 2.2234 36 1 5.7771 -6.3505 1.2405 37 1 2.5169 -7.4808 2.3380 38 1 2.6291 -9.0121 1.4357 39 1 0.1392 -6.8724 -0.4188 40 1 0.4009 -6.7233 1.3355 41 1 0.0054 -9.0999 -1.3482 42 1 -1.2280 -8.8056 3.0707 43 1 -3.7730 -8.8045 3.1461 44 1 -4.8848 -8.7515 0.8657 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787350832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:09 Heat of formation + Delta-G solvation = -66.614456 kcal Electronic energy + Delta-G solvation = -27971.805209 eV Core-core repulsion = 24017.041012 eV Total energy + Delta-G solvation = -3954.764196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.55109 -38.52395 -38.14730 -36.93809 -34.70500 -34.38975 -33.07199 -31.97287 -30.63861 -28.68104 -27.25091 -26.50456 -24.98350 -23.40523 -22.83318 -22.15992 -21.11273 -19.58394 -19.32246 -18.22754 -17.64269 -16.62697 -16.33341 -16.15020 -15.79987 -15.52419 -15.42643 -15.07155 -14.87891 -14.70805 -14.45434 -14.03532 -13.52733 -13.46199 -13.25205 -12.90340 -12.76672 -12.61682 -12.18797 -12.06512 -11.88237 -11.83607 -11.61706 -11.37666 -11.07303 -10.99394 -10.95820 -10.90073 -10.82387 -10.34985 -10.28059 -10.18301 -9.42129 -8.92853 -8.75980 -8.57535 -8.48921 -8.35582 -7.78993 -6.18826 -4.25811 0.93215 1.55687 1.94073 2.67185 2.96136 3.23025 3.28356 3.29709 3.69371 3.79025 4.25927 4.27997 4.41641 4.57952 4.74144 4.88372 4.97915 4.99392 5.08503 5.10317 5.16308 5.17339 5.22464 5.32052 5.46489 5.48562 5.50580 5.63421 5.67268 5.78903 6.00091 6.19790 6.24527 6.37865 6.41851 6.75500 6.98840 7.03816 7.38584 7.45712 7.48487 7.52318 7.78807 7.97680 8.69914 8.83083 9.25170 9.42797 10.91252 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010301 B = 0.003354 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.408569 B = 8345.577246 C =10469.430943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.268 3.732 10 N -0.729 5.729 11 C 0.698 3.302 12 O -0.588 6.588 13 N -0.640 5.640 14 C 0.078 3.922 15 C 0.047 3.953 16 O -0.379 6.379 17 C 0.047 3.953 18 C 0.140 3.860 19 H 0.080 0.920 20 C -0.137 4.137 21 C 0.166 3.834 22 H 0.112 0.888 23 O -0.553 6.553 24 C -0.196 4.196 25 C -0.138 4.138 26 C -0.133 4.133 27 C -0.217 4.217 28 S 0.112 5.888 29 H 0.266 0.734 30 H 0.026 0.974 31 H 0.023 0.977 32 H 0.384 0.616 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.055 0.945 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.375 0.625 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.047 -18.991 2.743 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.383 5.383 11 C 0.400 3.600 12 O -0.468 6.468 13 N -0.381 5.381 14 C -0.046 4.046 15 C -0.031 4.031 16 O -0.298 6.298 17 C -0.030 4.030 18 C 0.036 3.964 19 H 0.098 0.902 20 C -0.175 4.175 21 C 0.105 3.895 22 H 0.129 0.871 23 O -0.359 6.359 24 C -0.314 4.314 25 C -0.169 4.169 26 C -0.164 4.164 27 C -0.353 4.353 28 S 0.376 5.624 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.219 0.781 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.073 0.927 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.223 0.777 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.343 -19.448 1.497 19.551 hybrid contribution 0.346 1.788 1.335 2.258 sum 1.688 -17.659 2.832 17.964 Atomic orbital electron populations 1.69967 1.06087 1.27415 1.48725 1.24931 0.94903 0.99366 0.94686 0.86480 0.79430 0.82348 0.78677 1.20060 1.21040 1.20090 1.21166 0.93158 0.90469 1.53433 0.92119 1.18973 0.87743 0.81030 0.97566 1.45973 1.10846 1.04503 1.76938 1.16086 0.84790 0.80879 0.78234 1.90850 1.14430 1.82850 1.58671 1.47406 1.05176 1.05681 1.79834 1.22268 0.81345 1.01548 0.99399 1.22985 0.99982 0.82713 0.97404 1.87939 1.22391 1.25098 1.94335 1.23197 0.81191 1.01488 0.97145 1.21552 0.94559 0.81529 0.98789 0.90212 1.22881 0.93839 0.93495 1.07256 1.20707 0.87374 0.93221 0.88217 0.87074 1.86572 1.78875 1.53052 1.17357 1.25380 0.99849 1.09099 0.97051 1.20027 0.94909 1.04652 0.97280 1.20141 0.94158 1.03693 0.98387 1.25596 1.02923 1.10954 0.95841 1.84148 0.96137 1.72055 1.10089 0.92381 0.95636 0.95872 0.78112 0.89079 0.90856 0.92509 0.87789 0.92678 0.87729 0.86892 0.89637 0.77732 0.84396 0.84367 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.82 13.29 55.43 0.74 -25.08 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 8 H 0.06 1.52 7.60 -52.48 -0.40 1.12 16 9 C 0.27 7.02 5.43 -5.20 -0.03 6.99 16 10 N -0.73 -15.28 5.46 -66.42 -0.36 -15.64 16 11 C 0.70 13.88 8.13 -86.92 -0.71 13.17 16 12 O -0.59 -13.37 12.10 5.29 0.06 -13.30 16 13 N -0.64 -9.78 3.02 -170.42 -0.51 -10.30 16 14 C 0.08 0.94 6.63 -3.52 -0.02 0.92 16 15 C 0.05 0.50 6.99 37.31 0.26 0.76 16 16 O -0.38 -4.63 10.74 -35.23 -0.38 -5.01 16 17 C 0.05 0.55 5.62 37.31 0.21 0.76 16 18 C 0.14 1.87 3.08 -67.42 -0.21 1.66 16 19 H 0.08 1.06 7.86 -51.93 -0.41 0.65 16 20 C -0.14 -1.93 2.85 -26.73 -0.08 -2.00 16 21 C 0.17 1.93 3.14 -27.88 -0.09 1.84 16 22 H 0.11 1.13 6.39 -51.93 -0.33 0.80 16 23 O -0.55 -6.31 12.73 -35.23 -0.45 -6.76 16 24 C -0.20 -2.41 5.52 -36.01 -0.20 -2.61 16 25 C -0.14 -1.61 10.05 -41.21 -0.41 -2.02 16 26 C -0.13 -1.46 10.18 -41.21 -0.42 -1.88 16 27 C -0.22 -2.38 11.23 29.04 0.33 -2.05 16 28 S 0.11 1.32 22.67 -107.50 -2.44 -1.12 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.38 6.99 5.83 -40.82 -0.24 6.75 16 33 H 0.09 1.05 5.66 -51.93 -0.29 0.76 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 1.03 6.81 -51.93 -0.35 0.68 16 39 H 0.11 1.92 6.16 -51.93 -0.32 1.60 16 40 H 0.09 1.41 7.40 -51.93 -0.38 1.02 16 41 H 0.38 3.68 8.56 45.56 0.39 4.07 16 42 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 43 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 44 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -32.55 368.04 -9.88 -42.42 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.28 Total: 11.32 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.78 Total: 2.33 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.14 Total: -51.02 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.76 Total: -25.07 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.44 Total: -1.12 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.55 -9.88 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.193 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds