Wall clock time and date at job start Tue Mar 31 2020 23:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00016 * 2 1 4 4 H 1.48500 * 109.47215 * 240.00034 * 3 2 1 5 5 H 1.48494 * 109.47525 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47448 * 120.00272 * 3 2 1 7 7 C 1.37878 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99335 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00311 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47488 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00320 * 180.02562 * 10 9 7 12 12 O 1.21580 * 119.99848 * 5.05878 * 11 10 9 13 13 N 1.34773 * 119.99924 * 185.05236 * 11 10 9 14 14 C 1.47172 * 120.99363 * 354.72159 * 13 11 10 15 15 C 1.53295 * 108.41328 * 129.50868 * 14 13 11 16 16 O 1.42955 * 109.22239 * 52.28193 * 15 14 13 17 17 C 1.42960 * 114.16975 * 297.41558 * 16 15 14 18 18 C 1.47151 * 120.98365 * 174.70075 * 13 11 10 19 19 H 1.08999 * 109.68435 * 110.74910 * 18 13 11 20 20 C 1.52999 * 109.67883 * 350.23404 * 18 13 11 21 21 C 1.53004 * 109.47200 * 182.87323 * 20 18 13 22 22 H 1.09002 * 109.47073 * 56.32687 * 21 20 18 23 23 O 1.42898 * 109.46870 * 296.32522 * 21 20 18 24 24 C 1.50696 * 109.47269 * 176.32171 * 21 20 18 25 25 C 1.33387 * 125.20798 * 265.00061 * 24 21 20 26 26 C 1.38421 * 114.92487 * 180.02562 * 25 24 21 27 27 C 1.33391 * 114.92131 * 0.02562 * 26 25 24 28 28 S 1.75885 * 109.59207 * 359.97438 * 27 26 25 29 29 H 0.96997 * 119.99440 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46858 * 60.00562 * 9 7 2 31 31 H 1.08996 * 109.47369 * 300.00679 * 9 7 2 32 32 H 0.97006 * 119.99484 * 359.97438 * 10 9 7 33 33 H 1.08998 * 109.68477 * 9.76271 * 14 13 11 34 34 H 1.08998 * 109.68172 * 249.24956 * 14 13 11 35 35 H 1.08998 * 109.50808 * 292.35471 * 15 14 13 36 36 H 1.08999 * 109.55118 * 172.23633 * 15 14 13 37 37 H 1.09004 * 109.51182 * 302.66523 * 17 16 15 38 38 H 1.09000 * 109.51703 * 182.50664 * 17 16 15 39 39 H 1.08992 * 109.47325 * 62.87493 * 20 18 13 40 40 H 1.09003 * 109.47199 * 302.87429 * 20 18 13 41 41 H 0.96693 * 113.99732 * 305.02497 * 23 21 20 42 42 H 1.08011 * 122.53759 * 0.02562 * 25 24 21 43 43 H 1.08004 * 122.53785 * 179.97438 * 26 25 24 44 44 H 1.07995 * 125.20114 * 179.73525 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5622 -5.1068 -0.0944 13 7 2.6252 -5.9063 0.1017 14 6 4.0774 -5.6677 0.0998 15 6 4.6898 -6.3990 1.2999 16 8 4.2709 -7.7657 1.2820 17 6 2.8590 -7.9469 1.4140 18 6 2.1528 -7.2949 0.2197 19 1 2.3917 -7.8427 -0.6919 20 6 0.6397 -7.3070 0.4464 21 6 0.1644 -8.7484 0.6398 22 1 0.7124 -9.2041 1.4645 23 8 0.4000 -9.4922 -0.5574 24 6 -1.3097 -8.7536 0.9526 25 6 -1.8357 -8.7829 2.1780 26 6 -3.2193 -8.7821 2.2190 27 6 -3.8170 -8.7527 1.0269 28 16 -2.5999 -8.7230 -0.2425 29 1 -0.4849 0.8401 0.0004 30 1 0.6241 -2.5566 -0.8904 31 1 0.6246 -2.5570 0.8896 32 1 3.1567 -3.4355 -0.0009 33 1 4.2740 -4.5988 0.1819 34 1 4.5111 -6.0508 -0.8239 35 1 4.3544 -5.9273 2.2234 36 1 5.7771 -6.3505 1.2405 37 1 2.5169 -7.4808 2.3380 38 1 2.6291 -9.0121 1.4357 39 1 0.1392 -6.8724 -0.4188 40 1 0.4009 -6.7233 1.3355 41 1 0.0054 -9.0999 -1.3482 42 1 -1.2280 -8.8056 3.0707 43 1 -3.7730 -8.8045 3.1461 44 1 -4.8848 -8.7515 0.8657 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787350832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:08 Heat of formation + Delta-G solvation = -90.867565 kcal Electronic energy + Delta-G solvation = -27972.856902 eV Core-core repulsion = 24017.041012 eV Total energy + Delta-G solvation = -3955.815890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.84004 -39.65281 -39.24826 -37.85300 -36.36661 -35.75348 -34.68427 -33.51155 -31.56677 -29.95987 -28.87782 -27.70888 -25.98608 -24.88680 -24.10164 -23.33590 -22.37586 -20.94595 -20.39127 -19.47795 -18.74816 -18.09141 -17.63101 -17.42890 -17.01519 -16.75063 -16.55683 -16.38690 -16.15470 -15.86257 -15.65506 -15.30565 -14.91496 -14.73129 -14.45481 -14.15707 -13.95468 -13.80427 -13.66867 -13.53686 -13.08565 -12.93156 -12.87769 -12.69526 -12.62889 -12.39048 -12.23354 -12.13634 -12.00696 -11.73882 -11.49321 -11.30706 -11.21503 -10.78878 -10.32845 -9.93250 -9.58449 -9.41097 -9.35174 -8.28893 -6.45478 0.03038 0.66241 1.05388 1.42597 1.46917 1.54360 1.62237 1.81231 2.19624 2.37515 2.80465 3.06191 3.07432 3.35856 3.52759 3.67232 3.88970 4.03279 4.05900 4.11538 4.12969 4.21114 4.29876 4.32901 4.57816 4.60105 4.62913 4.68311 4.80766 4.85339 5.03928 5.06451 5.17605 5.22041 5.27336 5.32847 5.44710 5.54210 5.61710 5.69537 5.84569 6.05903 6.07723 6.49439 6.65808 7.14864 7.24917 7.69600 8.82996 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010301 B = 0.003354 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.408569 B = 8345.577246 C =10469.430943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.290 3.710 10 N -0.726 5.726 11 C 0.694 3.306 12 O -0.624 6.624 13 N -0.633 5.633 14 C 0.071 3.929 15 C 0.049 3.951 16 O -0.385 6.385 17 C 0.054 3.946 18 C 0.137 3.863 19 H 0.087 0.913 20 C -0.121 4.121 21 C 0.179 3.821 22 H 0.132 0.868 23 O -0.554 6.554 24 C -0.217 4.217 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.219 4.219 28 S 0.086 5.914 29 H 0.269 0.731 30 H -0.016 1.016 31 H -0.015 1.015 32 H 0.399 0.601 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.137 0.863 37 H 0.054 0.946 38 H 0.127 0.873 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.381 0.619 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.423 -19.548 3.553 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.100 0.900 9 C 0.167 3.833 10 N -0.382 5.382 11 C 0.395 3.605 12 O -0.506 6.506 13 N -0.372 5.372 14 C -0.052 4.052 15 C -0.028 4.028 16 O -0.303 6.303 17 C -0.023 4.023 18 C 0.034 3.966 19 H 0.104 0.896 20 C -0.160 4.160 21 C 0.118 3.882 22 H 0.149 0.851 23 O -0.361 6.361 24 C -0.335 4.335 25 C -0.174 4.174 26 C -0.173 4.173 27 C -0.355 4.355 28 S 0.349 5.651 29 H 0.077 0.923 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.237 0.763 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.155 0.845 37 H 0.072 0.928 38 H 0.145 0.855 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.229 0.771 42 H 0.173 0.827 43 H 0.180 0.820 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.789 -20.065 2.305 20.550 hybrid contribution -0.440 1.881 1.074 2.210 sum 3.349 -18.184 3.379 18.796 Atomic orbital electron populations 1.70136 1.08244 1.28594 1.49835 1.26026 0.95735 1.03745 0.93815 0.85230 0.77945 0.76687 0.79498 1.18709 1.21118 1.18601 1.21551 0.94205 0.90559 1.53102 0.90037 1.18351 0.87974 0.83218 0.93804 1.45579 1.10792 1.04029 1.77768 1.16263 0.84916 0.81298 0.77974 1.90858 1.16381 1.83513 1.59847 1.47423 1.06240 1.05286 1.78272 1.22587 0.79007 1.02362 1.01209 1.23122 1.01711 0.81744 0.96220 1.87944 1.22259 1.25888 1.94190 1.23189 0.80915 1.02463 0.95739 1.21752 0.94207 0.80436 1.00248 0.89564 1.22546 0.94312 0.94783 1.04310 1.20583 0.87366 0.91429 0.88839 0.85060 1.86547 1.78939 1.52963 1.17605 1.25549 1.00158 1.10335 0.97443 1.20386 0.95666 1.03720 0.97669 1.20478 0.94139 1.03340 0.99387 1.25954 1.03812 1.10357 0.95358 1.84192 0.97119 1.72556 1.11197 0.92266 0.99764 0.99753 0.76314 0.88695 0.89172 0.92882 0.84489 0.92800 0.85544 0.90294 0.92425 0.77098 0.82686 0.82011 0.79800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 2 C 0.01 0.36 5.46 84.65 0.46 0.83 16 3 Si 0.98 41.87 29.54 68.60 2.03 43.90 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.56 -30.09 9.28 25.60 0.24 -29.85 16 8 H 0.08 3.97 7.60 -2.91 -0.02 3.95 16 9 C 0.29 15.93 5.43 85.63 0.47 16.40 16 10 N -0.73 -31.23 5.46 -482.32 -2.64 -33.86 16 11 C 0.69 28.49 8.13 179.06 1.46 29.95 16 12 O -0.62 -30.14 12.10 -3.97 -0.05 -30.19 16 13 N -0.63 -19.12 3.02 -811.35 -2.45 -21.57 16 14 C 0.07 1.56 6.63 86.35 0.57 2.13 16 15 C 0.05 0.90 6.99 72.08 0.50 1.41 16 16 O -0.38 -8.24 10.74 -148.98 -1.60 -9.84 16 17 C 0.05 1.14 5.62 72.08 0.41 1.55 16 18 C 0.14 3.57 3.08 44.97 0.14 3.71 16 19 H 0.09 2.18 7.86 -2.39 -0.02 2.16 16 20 C -0.12 -3.52 2.85 30.60 0.09 -3.43 16 21 C 0.18 4.09 3.14 29.85 0.09 4.19 16 22 H 0.13 2.45 6.39 -2.39 -0.02 2.43 16 23 O -0.55 -12.33 12.73 -148.98 -1.90 -14.23 16 24 C -0.22 -5.36 5.52 24.59 0.14 -5.22 16 25 C -0.14 -3.26 10.05 21.22 0.21 -3.05 16 26 C -0.14 -3.00 10.18 21.22 0.22 -2.79 16 27 C -0.22 -4.69 11.23 66.72 0.75 -3.94 16 28 S 0.09 2.07 22.67 -56.49 -1.28 0.79 16 29 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 30 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 31 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 32 H 0.40 14.39 5.83 -92.70 -0.54 13.85 16 33 H 0.09 2.01 5.66 -2.39 -0.01 2.00 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.13 2.12 6.81 -2.39 -0.02 2.11 16 39 H 0.08 2.86 6.16 -2.39 -0.01 2.85 16 40 H 0.06 1.99 7.40 -2.39 -0.02 1.97 16 41 H 0.38 7.60 8.56 -74.06 -0.63 6.97 16 42 H 0.16 2.84 8.06 -2.90 -0.02 2.82 16 43 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 44 H 0.18 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -73.35 368.04 -2.00 -75.35 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: -0.13 Total: 33.33 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 5.74 Total: 11.88 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -4.80 Total: -110.98 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -3.54 Total: -54.26 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.28 Total: 0.79 kcal Total: -73.35 -2.00 -75.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.520 kcal (2) G-P(sol) polarization free energy of solvation -73.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds