Wall clock time and date at job start Tue Mar 31 2020 23:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00052 * 2 1 4 4 H 1.48505 * 109.46935 * 269.99619 * 3 2 1 5 5 H 1.48498 * 109.46864 * 29.99912 * 3 2 1 6 6 H 1.48496 * 109.47093 * 150.00027 * 3 2 1 7 7 C 1.37876 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00562 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99594 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46947 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99616 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00157 * 355.02922 * 11 10 9 13 13 N 1.34778 * 119.99410 * 175.02890 * 11 10 9 14 14 C 1.47146 * 120.98717 * 5.32906 * 13 11 10 15 15 C 1.53290 * 108.41648 * 129.45354 * 14 13 11 16 16 O 1.42954 * 109.22513 * 52.28560 * 15 14 13 17 17 C 1.42968 * 114.16584 * 297.41931 * 16 15 14 18 18 C 1.47166 * 120.98652 * 185.25093 * 13 11 10 19 19 H 1.08999 * 109.68251 * 110.80871 * 18 13 11 20 20 C 1.52998 * 109.68581 * 350.29171 * 18 13 11 21 21 C 1.53002 * 109.47141 * 179.50367 * 20 18 13 22 22 H 1.09006 * 109.47091 * 306.88598 * 21 20 18 23 23 O 1.42900 * 109.47421 * 66.88610 * 21 20 18 24 24 C 1.50699 * 109.47308 * 186.89021 * 21 20 18 25 25 C 1.33386 * 125.20554 * 99.99342 * 24 21 20 26 26 C 1.38424 * 114.92206 * 179.97438 * 25 24 21 27 27 C 1.33392 * 114.92094 * 359.97438 * 26 25 24 28 28 S 1.75884 * 109.59365 * 359.76062 * 27 26 25 29 29 H 0.97002 * 119.99702 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47314 * 59.99461 * 9 7 2 31 31 H 1.09006 * 109.46989 * 300.00017 * 9 7 2 32 32 H 0.96997 * 120.00304 * 359.97438 * 10 9 7 33 33 H 1.09003 * 109.68104 * 9.71473 * 14 13 11 34 34 H 1.09002 * 109.68343 * 249.19964 * 14 13 11 35 35 H 1.09007 * 109.51514 * 172.21155 * 15 14 13 36 36 H 1.09007 * 109.51565 * 292.30859 * 15 14 13 37 37 H 1.09003 * 109.50960 * 182.50174 * 17 16 15 38 38 H 1.08995 * 109.51319 * 302.60477 * 17 16 15 39 39 H 1.09007 * 109.47128 * 299.49933 * 20 18 13 40 40 H 1.08997 * 109.47493 * 59.50359 * 20 18 13 41 41 H 0.96706 * 113.99891 * 59.99775 * 23 21 20 42 42 H 1.07994 * 122.53876 * 0.02562 * 25 24 21 43 43 H 1.08000 * 122.54219 * 180.02562 * 26 25 24 44 44 H 1.07997 * 125.20340 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1143 -1.9014 -0.0903 13 7 5.7749 -4.0881 0.1020 14 6 4.8421 -5.2261 0.0965 15 6 5.3275 -6.2450 -0.9409 16 8 6.7015 -6.5516 -0.6925 17 6 7.5835 -5.4342 -0.8240 18 6 7.2137 -4.3738 0.2194 19 1 7.4330 -4.7500 1.2186 20 6 8.0155 -3.0963 -0.0376 21 6 9.5098 -3.3961 0.0978 22 1 9.6990 -3.8729 1.0596 23 8 9.9175 -4.2710 -0.9559 24 6 10.2900 -2.1096 0.0128 25 6 10.7760 -1.4347 1.0556 26 6 11.4617 -0.2765 0.7325 27 6 11.5330 -0.0111 -0.5728 28 16 10.7065 -1.2730 -1.4773 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8910 31 1 3.8752 -0.6805 -0.8889 32 1 3.3695 -3.3126 0.0010 33 1 3.8428 -4.8805 -0.1681 34 1 4.8213 -5.6885 1.0833 35 1 4.7318 -7.1547 -0.8642 36 1 5.2225 -5.8245 -1.9411 37 1 8.6110 -5.7606 -0.6631 38 1 7.4883 -5.0109 -1.8239 39 1 7.8076 -2.7332 -1.0442 40 1 7.7303 -2.3358 0.6892 41 1 9.7780 -3.9108 -1.8425 42 1 10.6451 -1.7671 2.0747 43 1 11.9060 0.3635 1.4805 44 1 12.0261 0.8456 -1.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787350847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:20 Heat of formation + Delta-G solvation = -61.143682 kcal Electronic energy + Delta-G solvation = -28089.030171 eV Core-core repulsion = 24134.503206 eV Total energy + Delta-G solvation = -3954.526966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.63080 -38.65309 -38.17918 -37.05067 -34.80785 -34.47146 -32.95074 -32.00236 -30.84932 -28.85660 -27.69423 -26.69660 -24.83702 -23.37024 -22.64300 -22.05798 -21.20276 -19.77566 -19.42280 -18.25327 -17.79170 -16.64185 -16.47028 -16.27250 -15.96692 -15.64295 -15.36498 -15.17688 -14.89416 -14.81842 -14.36588 -14.23482 -13.56738 -13.49671 -13.23172 -12.99152 -12.83098 -12.56277 -12.37817 -12.22865 -12.19010 -11.99220 -11.71891 -11.57801 -11.15156 -10.97176 -10.88467 -10.84038 -10.77431 -10.42005 -10.16203 -9.98113 -9.50979 -9.00417 -8.80121 -8.69606 -8.58311 -8.43026 -8.01023 -6.23991 -4.26141 0.84340 1.46142 1.83797 2.59582 2.88263 3.24817 3.31899 3.39836 3.64679 3.74606 4.15097 4.30723 4.36227 4.50758 4.70845 4.86724 4.91391 4.96465 5.05599 5.07557 5.11651 5.14128 5.25694 5.27360 5.41060 5.42048 5.54717 5.61511 5.78117 5.86181 5.93498 6.11846 6.17655 6.32200 6.33110 6.62438 6.77148 7.04962 7.07207 7.19540 7.26486 7.32203 7.45189 8.21036 8.59899 8.75118 9.11397 9.36976 10.87984 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009353 B = 0.003834 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.130702 B = 7301.646874 C = 9848.343471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.239 3.761 10 N -0.722 5.722 11 C 0.699 3.301 12 O -0.592 6.592 13 N -0.638 5.638 14 C 0.078 3.922 15 C 0.047 3.953 16 O -0.383 6.383 17 C 0.046 3.954 18 C 0.139 3.861 19 H 0.074 0.926 20 C -0.133 4.133 21 C 0.167 3.833 22 H 0.115 0.885 23 O -0.553 6.553 24 C -0.195 4.195 25 C -0.135 4.135 26 C -0.133 4.133 27 C -0.215 4.215 28 S 0.104 5.896 29 H 0.268 0.732 30 H 0.022 0.978 31 H 0.019 0.981 32 H 0.390 0.610 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.127 0.873 38 H 0.049 0.951 39 H 0.081 0.919 40 H 0.115 0.885 41 H 0.373 0.627 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.761 -9.122 -0.911 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.096 0.904 9 C 0.116 3.884 10 N -0.376 5.376 11 C 0.401 3.599 12 O -0.472 6.472 13 N -0.378 5.378 14 C -0.046 4.046 15 C -0.031 4.031 16 O -0.301 6.301 17 C -0.031 4.031 18 C 0.034 3.966 19 H 0.092 0.908 20 C -0.171 4.171 21 C 0.105 3.895 22 H 0.133 0.867 23 O -0.359 6.359 24 C -0.313 4.313 25 C -0.165 4.165 26 C -0.163 4.163 27 C -0.351 4.351 28 S 0.368 5.632 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.226 0.774 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.145 0.855 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.133 0.867 41 H 0.221 0.779 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 21.081 -9.088 -1.950 23.039 hybrid contribution -0.176 1.669 1.023 1.966 sum 20.905 -7.419 -0.927 22.202 Atomic orbital electron populations 1.69882 1.06204 1.27436 1.49435 1.24773 0.94773 0.99125 0.93855 0.86816 0.80563 0.83236 0.79056 1.19852 1.20913 1.18508 1.21075 0.88543 0.95157 1.53338 0.90389 1.19360 0.94861 0.77576 0.96594 1.45656 1.03824 1.11091 1.77035 1.16073 0.83597 0.82086 0.78123 1.90863 1.53905 1.43565 1.58834 1.47361 1.06364 1.04591 1.79516 1.22296 0.93919 0.87879 1.00526 1.22959 0.83564 0.99035 0.97554 1.87963 1.16692 1.34077 1.91346 1.23520 0.95134 0.86969 0.97509 1.21657 0.79593 0.95869 0.99449 0.90824 1.22895 0.90384 0.97165 1.06659 1.20740 0.92300 0.84450 0.91991 0.86705 1.86566 1.87242 1.44805 1.17303 1.25314 1.06578 1.02891 0.96521 1.20062 1.00586 0.96085 0.99769 1.20164 1.01996 0.98291 0.95887 1.25582 1.08095 1.04091 0.97310 1.84113 1.52295 1.17516 1.09299 0.92246 0.96002 0.96307 0.77418 0.89057 0.90741 0.87862 0.92693 0.85526 0.93225 0.90037 0.86680 0.77895 0.84259 0.84302 0.81959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.54 -14.77 9.83 -34.44 -0.34 -15.11 16 8 H 0.08 2.21 7.84 -52.49 -0.41 1.79 16 9 C 0.24 5.83 4.50 -5.19 -0.02 5.81 16 10 N -0.72 -14.66 5.46 -66.41 -0.36 -15.02 16 11 C 0.70 13.31 8.23 -86.91 -0.72 12.59 16 12 O -0.59 -12.67 11.90 5.30 0.06 -12.61 16 13 N -0.64 -9.44 3.02 -170.43 -0.51 -9.96 16 14 C 0.08 0.93 6.57 -3.54 -0.02 0.90 16 15 C 0.05 0.50 6.98 37.31 0.26 0.76 16 16 O -0.38 -4.67 10.74 -35.23 -0.38 -5.05 16 17 C 0.05 0.52 5.15 37.31 0.19 0.72 16 18 C 0.14 1.77 3.19 -67.42 -0.21 1.55 16 19 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 20 C -0.13 -1.76 2.95 -26.73 -0.08 -1.84 16 21 C 0.17 1.76 3.31 -27.88 -0.09 1.67 16 22 H 0.12 1.10 8.12 -51.93 -0.42 0.68 16 23 O -0.55 -5.39 9.99 -35.23 -0.35 -5.75 16 24 C -0.20 -2.21 5.48 -36.00 -0.20 -2.41 16 25 C -0.13 -1.47 10.04 -41.21 -0.41 -1.88 16 26 C -0.13 -1.36 10.18 -41.21 -0.42 -1.78 16 27 C -0.22 -2.18 11.23 29.04 0.33 -1.85 16 28 S 0.10 1.12 22.63 -107.50 -2.43 -1.32 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 30 H 0.02 0.57 7.20 -51.93 -0.37 0.19 16 31 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 32 H 0.39 7.08 5.88 -40.82 -0.24 6.84 16 33 H 0.09 1.06 5.78 -51.93 -0.30 0.76 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.13 1.33 5.96 -51.93 -0.31 1.03 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.23 7.31 -51.92 -0.38 0.85 16 40 H 0.12 1.89 6.21 -51.93 -0.32 1.56 16 41 H 0.37 3.06 8.45 45.56 0.38 3.45 16 42 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -32.42 362.56 -9.56 -41.98 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.32 Total: 9.86 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.84 Total: 1.24 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.10 Total: -50.50 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.67 Total: -23.41 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.43 Total: -1.32 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.42 -9.56 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.159 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds