Wall clock time and date at job start Tue Mar 31 2020 23:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00052 * 2 1 4 4 H 1.48505 * 109.46935 * 269.99619 * 3 2 1 5 5 H 1.48498 * 109.46864 * 29.99912 * 3 2 1 6 6 H 1.48496 * 109.47093 * 150.00027 * 3 2 1 7 7 C 1.37876 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00562 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99594 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46947 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99616 * 179.97438 * 10 9 7 12 12 O 1.21579 * 120.00157 * 355.02922 * 11 10 9 13 13 N 1.34778 * 119.99410 * 175.02890 * 11 10 9 14 14 C 1.47146 * 120.98717 * 5.32906 * 13 11 10 15 15 C 1.53290 * 108.41648 * 129.45354 * 14 13 11 16 16 O 1.42954 * 109.22513 * 52.28560 * 15 14 13 17 17 C 1.42968 * 114.16584 * 297.41931 * 16 15 14 18 18 C 1.47166 * 120.98652 * 185.25093 * 13 11 10 19 19 H 1.08999 * 109.68251 * 110.80871 * 18 13 11 20 20 C 1.52998 * 109.68581 * 350.29171 * 18 13 11 21 21 C 1.53002 * 109.47141 * 179.50367 * 20 18 13 22 22 H 1.09006 * 109.47091 * 306.88598 * 21 20 18 23 23 O 1.42900 * 109.47421 * 66.88610 * 21 20 18 24 24 C 1.50699 * 109.47308 * 186.89021 * 21 20 18 25 25 C 1.33386 * 125.20554 * 99.99342 * 24 21 20 26 26 C 1.38424 * 114.92206 * 179.97438 * 25 24 21 27 27 C 1.33392 * 114.92094 * 359.97438 * 26 25 24 28 28 S 1.75884 * 109.59365 * 359.76062 * 27 26 25 29 29 H 0.97002 * 119.99702 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47314 * 59.99461 * 9 7 2 31 31 H 1.09006 * 109.46989 * 300.00017 * 9 7 2 32 32 H 0.96997 * 120.00304 * 359.97438 * 10 9 7 33 33 H 1.09003 * 109.68104 * 9.71473 * 14 13 11 34 34 H 1.09002 * 109.68343 * 249.19964 * 14 13 11 35 35 H 1.09007 * 109.51514 * 172.21155 * 15 14 13 36 36 H 1.09007 * 109.51565 * 292.30859 * 15 14 13 37 37 H 1.09003 * 109.50960 * 182.50174 * 17 16 15 38 38 H 1.08995 * 109.51319 * 302.60477 * 17 16 15 39 39 H 1.09007 * 109.47128 * 299.49933 * 20 18 13 40 40 H 1.08997 * 109.47493 * 59.50359 * 20 18 13 41 41 H 0.96706 * 113.99891 * 59.99775 * 23 21 20 42 42 H 1.07994 * 122.53876 * 0.02562 * 25 24 21 43 43 H 1.08000 * 122.54219 * 180.02562 * 26 25 24 44 44 H 1.07997 * 125.20340 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1143 -1.9014 -0.0903 13 7 5.7749 -4.0881 0.1020 14 6 4.8421 -5.2261 0.0965 15 6 5.3275 -6.2450 -0.9409 16 8 6.7015 -6.5516 -0.6925 17 6 7.5835 -5.4342 -0.8240 18 6 7.2137 -4.3738 0.2194 19 1 7.4330 -4.7500 1.2186 20 6 8.0155 -3.0963 -0.0376 21 6 9.5098 -3.3961 0.0978 22 1 9.6990 -3.8729 1.0596 23 8 9.9175 -4.2710 -0.9559 24 6 10.2900 -2.1096 0.0128 25 6 10.7760 -1.4347 1.0556 26 6 11.4617 -0.2765 0.7325 27 6 11.5330 -0.0111 -0.5728 28 16 10.7065 -1.2730 -1.4773 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8910 31 1 3.8752 -0.6805 -0.8889 32 1 3.3695 -3.3126 0.0010 33 1 3.8428 -4.8805 -0.1681 34 1 4.8213 -5.6885 1.0833 35 1 4.7318 -7.1547 -0.8642 36 1 5.2225 -5.8245 -1.9411 37 1 8.6110 -5.7606 -0.6631 38 1 7.4883 -5.0109 -1.8239 39 1 7.8076 -2.7332 -1.0442 40 1 7.7303 -2.3358 0.6892 41 1 9.7780 -3.9108 -1.8425 42 1 10.6451 -1.7671 2.0747 43 1 11.9060 0.3635 1.4805 44 1 12.0261 0.8456 -1.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787350847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:19 Heat of formation + Delta-G solvation = -84.788291 kcal Electronic energy + Delta-G solvation = -28090.055478 eV Core-core repulsion = 24134.503206 eV Total energy + Delta-G solvation = -3955.552273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86282 -39.70187 -39.21642 -37.86778 -36.40388 -35.75874 -34.64804 -33.43723 -31.70627 -30.26148 -29.12984 -27.79671 -25.74380 -24.56244 -24.03341 -23.10996 -22.54838 -21.06035 -20.42733 -19.45036 -18.83958 -18.37189 -17.65421 -17.34228 -16.96487 -16.85845 -16.52655 -16.35711 -15.99008 -15.90158 -15.73672 -15.46003 -14.93163 -14.91818 -14.45320 -14.24970 -14.00325 -13.91657 -13.60844 -13.47784 -13.08059 -12.97755 -12.95475 -12.75703 -12.64311 -12.51541 -12.13215 -11.93978 -11.88828 -11.70856 -11.62538 -11.32860 -11.14744 -10.92485 -10.31090 -9.96409 -9.59296 -9.40448 -9.37572 -8.40880 -6.47598 0.03141 0.66159 1.04039 1.31762 1.33784 1.46533 1.59782 1.81285 2.14837 2.27183 2.85701 2.94958 3.01117 3.37220 3.54039 3.72741 3.89926 3.99970 4.08014 4.15116 4.18112 4.21953 4.32220 4.38197 4.60292 4.61447 4.67277 4.72105 4.76373 4.86512 4.95651 5.04186 5.07660 5.19306 5.21033 5.28752 5.33633 5.51569 5.54331 5.63132 5.88035 6.14039 6.16994 6.50528 6.53883 7.05824 7.17909 7.62480 8.73897 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009353 B = 0.003834 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.130702 B = 7301.646874 C = 9848.343471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.029 3.971 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.255 3.745 10 N -0.725 5.725 11 C 0.696 3.304 12 O -0.619 6.619 13 N -0.632 5.632 14 C 0.071 3.929 15 C 0.049 3.951 16 O -0.390 6.390 17 C 0.056 3.944 18 C 0.134 3.866 19 H 0.087 0.913 20 C -0.118 4.118 21 C 0.180 3.820 22 H 0.130 0.870 23 O -0.551 6.551 24 C -0.214 4.214 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.218 4.218 28 S 0.088 5.912 29 H 0.272 0.728 30 H 0.010 0.990 31 H 0.008 0.992 32 H 0.400 0.600 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.050 0.950 37 H 0.140 0.860 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.380 0.620 42 H 0.153 0.847 43 H 0.160 0.840 44 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.370 -9.796 -0.648 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.076 0.924 9 C 0.130 3.870 10 N -0.381 5.381 11 C 0.398 3.602 12 O -0.501 6.501 13 N -0.371 5.371 14 C -0.051 4.051 15 C -0.028 4.028 16 O -0.308 6.308 17 C -0.021 4.021 18 C 0.031 3.969 19 H 0.105 0.895 20 C -0.156 4.156 21 C 0.118 3.882 22 H 0.147 0.853 23 O -0.358 6.358 24 C -0.332 4.332 25 C -0.174 4.174 26 C -0.174 4.174 27 C -0.354 4.354 28 S 0.352 5.648 29 H 0.082 0.918 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.237 0.763 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.151 0.849 36 H 0.069 0.931 37 H 0.157 0.843 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.229 0.771 42 H 0.171 0.829 43 H 0.178 0.822 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 22.706 -9.826 -1.695 24.799 hybrid contribution -0.669 1.800 0.945 2.140 sum 22.037 -8.026 -0.749 23.465 Atomic orbital electron populations 1.69979 1.07647 1.28603 1.50687 1.25549 0.95496 1.02519 0.93564 0.85877 0.79269 0.79433 0.79413 1.19081 1.19794 1.18501 1.21263 0.89927 0.94510 1.52652 0.92407 1.18908 0.92969 0.79717 0.95361 1.45405 1.04856 1.09834 1.77956 1.16188 0.82737 0.83294 0.77958 1.90871 1.54328 1.45084 1.59798 1.47409 1.07823 1.03780 1.78079 1.22558 0.93405 0.87133 1.02032 1.23074 0.83227 0.99833 0.96680 1.87962 1.17312 1.34218 1.91291 1.23462 0.95692 0.86309 0.96666 1.21888 0.78213 0.96061 1.00725 0.89547 1.22577 0.92496 0.96416 1.04115 1.20553 0.90182 0.84589 0.92827 0.85266 1.86542 1.86963 1.44591 1.17662 1.25475 1.07393 1.03476 0.96847 1.20389 1.00279 0.96268 1.00421 1.20470 1.01992 0.98428 0.96506 1.25937 1.07741 1.04353 0.97347 1.84119 1.52728 1.18266 1.09737 0.91830 0.97259 0.97400 0.76299 0.89028 0.89174 0.84925 0.93115 0.84252 0.93592 0.92357 0.89899 0.77101 0.82930 0.82207 0.79866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.29 13.96 21.45 0.30 -54.99 16 2 C 0.03 1.64 5.47 84.65 0.46 2.11 16 3 Si 0.94 44.04 27.47 68.60 1.88 45.92 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.26 -12.18 6.54 99.48 0.65 -11.53 16 7 C -0.55 -30.06 9.83 25.60 0.25 -29.81 16 8 H 0.06 3.34 7.84 -2.91 -0.02 3.32 16 9 C 0.25 12.54 4.50 85.64 0.39 12.93 16 10 N -0.73 -29.56 5.46 -482.29 -2.63 -32.19 16 11 C 0.70 26.52 8.23 179.05 1.47 27.99 16 12 O -0.62 -26.92 11.90 -3.96 -0.05 -26.97 16 13 N -0.63 -18.13 3.02 -811.38 -2.45 -20.58 16 14 C 0.07 1.58 6.57 86.35 0.57 2.15 16 15 C 0.05 0.93 6.98 72.08 0.50 1.44 16 16 O -0.39 -8.51 10.74 -148.98 -1.60 -10.11 16 17 C 0.06 1.17 5.15 72.08 0.37 1.54 16 18 C 0.13 3.26 3.19 44.96 0.14 3.40 16 19 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 20 C -0.12 -3.09 2.95 30.59 0.09 -3.00 16 21 C 0.18 3.62 3.31 29.85 0.10 3.72 16 22 H 0.13 2.23 8.12 -2.38 -0.02 2.21 16 23 O -0.55 -9.93 9.99 -148.98 -1.49 -11.42 16 24 C -0.21 -4.70 5.48 24.59 0.13 -4.57 16 25 C -0.14 -2.97 10.04 21.22 0.21 -2.75 16 26 C -0.14 -2.73 10.18 21.22 0.22 -2.52 16 27 C -0.22 -4.15 11.23 66.72 0.75 -3.40 16 28 S 0.09 1.85 22.63 -56.49 -1.28 0.57 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 31 H 0.01 0.42 7.57 -2.38 -0.02 0.40 16 32 H 0.40 14.51 5.88 -92.71 -0.55 13.96 16 33 H 0.09 2.02 5.78 -2.39 -0.01 2.01 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.14 2.59 5.96 -2.39 -0.01 2.58 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.79 7.31 -2.38 -0.02 1.77 16 40 H 0.08 2.76 6.21 -2.39 -0.01 2.75 16 41 H 0.38 5.87 8.45 -74.05 -0.63 5.25 16 42 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 44 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -69.52 362.56 -1.84 -71.36 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: -0.18 Total: 29.18 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 5.66 Total: 9.23 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -4.78 Total: -107.77 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -3.14 Total: -48.50 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -1.28 Total: 0.57 kcal Total: -69.52 -1.84 -71.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.430 kcal (2) G-P(sol) polarization free energy of solvation -69.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds