Wall clock time and date at job start Tue Mar 31 2020 23:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47132 * 113.16029 * 3 2 1 5 5 N 1.46490 * 109.47305 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00322 * 270.00146 * 5 4 3 7 7 C 1.50707 * 109.47162 * 269.99844 * 6 5 4 8 8 H 1.07998 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99930 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99982 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47241 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47303 * 119.99759 * 11 9 7 14 14 H 1.48495 * 109.47340 * 239.99921 * 11 9 7 15 15 C 1.34780 * 120.00111 * 89.99580 * 5 4 3 16 16 O 1.21280 * 120.00423 * 179.97438 * 15 5 4 17 17 C 1.50701 * 119.99795 * 0.02562 * 15 5 4 18 18 O 1.45198 * 109.47036 * 179.97438 * 17 15 5 19 19 C 1.34231 * 116.99983 * 179.97438 * 18 17 15 20 20 O 1.20822 * 120.00142 * 0.02562 * 19 18 17 21 21 C 1.50698 * 120.00053 * 180.02562 * 19 18 17 22 22 H 1.08997 * 109.39214 * 60.19612 * 21 19 18 23 23 C 1.52579 * 109.39324 * 180.02562 * 21 19 18 24 24 C 1.52577 * 110.72905 * 190.82205 * 23 21 19 25 25 C 1.53092 * 109.95715 * 289.32175 * 24 23 21 26 26 S 1.81748 * 108.84035 * 63.02658 * 25 24 23 27 27 C 1.53101 * 109.39011 * 300.49739 * 21 19 18 28 28 H 1.09001 * 109.46962 * 353.15948 * 3 2 1 29 29 H 1.08996 * 109.46635 * 233.15718 * 3 2 1 30 30 H 1.09006 * 109.47320 * 59.99615 * 4 3 2 31 31 H 1.09002 * 109.47139 * 299.99841 * 4 3 2 32 32 H 1.09000 * 109.47018 * 29.99405 * 6 5 4 33 33 H 1.09000 * 109.47828 * 149.99700 * 6 5 4 34 34 H 0.97001 * 119.99961 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.47060 * 299.99722 * 17 15 5 36 36 H 1.09001 * 109.47380 * 59.99809 * 17 15 5 37 37 H 1.09004 * 109.22382 * 311.14728 * 23 21 19 38 38 H 1.09003 * 109.22770 * 70.53869 * 23 21 19 39 39 H 1.09004 * 109.39136 * 49.47551 * 24 23 21 40 40 H 1.09005 * 109.38867 * 169.17229 * 24 23 21 41 41 H 1.09007 * 109.57821 * 182.83263 * 25 24 23 42 42 H 1.08994 * 109.57847 * 303.21611 * 25 24 23 43 43 H 1.09002 * 109.57299 * 296.63307 * 27 21 19 44 44 H 1.08996 * 109.58055 * 57.01998 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5682 -1.3263 5 7 4.5827 0.5695 -1.3261 6 6 5.3142 1.7366 -0.8271 7 6 5.5648 2.6954 -1.9625 8 1 5.2145 2.4588 -2.9563 9 6 6.2411 3.8746 -1.7324 10 7 6.6671 4.1629 -0.5220 11 14 6.5511 5.0635 -3.1395 12 1 5.9748 4.5100 -4.3912 13 1 5.9119 6.3688 -2.8346 14 1 8.0133 5.2565 -3.3114 15 6 5.2576 -0.5032 -1.7848 16 8 6.4704 -0.5021 -1.7851 17 6 4.5051 -1.7036 -2.2985 18 8 5.4496 -2.7174 -2.7326 19 6 4.9376 -3.8584 -3.2203 20 8 3.7399 -4.0049 -3.2828 21 6 5.8565 -4.9565 -3.6899 22 1 6.4823 -5.2844 -2.8599 23 6 5.0248 -6.1325 -4.1932 24 6 5.9055 -7.3567 -4.4253 25 6 6.8026 -7.1313 -5.6452 26 16 7.9127 -5.7325 -5.3069 27 6 6.7472 -4.4268 -4.8169 28 1 2.9718 -1.0195 0.1224 29 1 2.9710 0.6170 0.8224 30 1 2.7539 1.5885 -1.4487 31 1 2.7547 -0.0481 -2.1487 32 1 4.7246 2.2326 -0.0561 33 1 6.2668 1.4156 -0.4057 34 1 7.1426 4.9927 -0.3600 35 1 3.8784 -2.1072 -1.5032 36 1 3.8786 -1.4072 -3.1397 37 1 4.2612 -6.3746 -3.4540 38 1 4.5419 -5.8556 -5.1304 39 1 6.5265 -7.5278 -3.5460 40 1 5.2747 -8.2291 -4.5962 41 1 7.3926 -8.0280 -5.8354 42 1 6.1861 -6.9062 -6.5154 43 1 6.1293 -4.1492 -5.6708 44 1 7.3011 -3.5561 -4.4661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811410407.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:22 Heat of formation + Delta-G solvation = -120.871540 kcal Electronic energy + Delta-G solvation = -26969.313367 eV Core-core repulsion = 23012.196407 eV Total energy + Delta-G solvation = -3957.116960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93572 -40.68057 -38.25694 -37.95029 -37.14697 -36.70896 -34.88777 -33.03185 -32.23074 -30.72671 -28.48755 -28.29303 -25.63057 -25.37278 -24.42609 -22.73093 -21.19591 -20.30123 -19.07123 -18.88762 -18.41159 -18.22617 -17.78363 -17.58944 -17.21027 -16.67416 -16.38271 -15.97585 -15.73086 -15.69825 -15.44660 -14.89003 -14.64188 -14.50248 -14.37062 -14.16329 -13.95434 -13.81124 -13.67635 -13.59679 -13.51347 -13.19040 -12.96837 -12.73357 -12.66794 -12.54691 -12.47206 -12.20161 -12.10266 -12.06843 -11.95153 -11.75213 -11.65118 -11.43662 -10.70320 -10.66763 -10.59052 -9.58057 -8.75089 -8.18858 -6.30512 0.65112 1.00470 1.21590 1.39869 1.42991 1.52505 1.58134 1.59564 1.79724 1.82474 2.31437 2.45089 3.03614 3.14149 3.46960 3.50104 3.55432 3.58018 3.84439 3.91016 3.98817 4.05619 4.08076 4.10859 4.14061 4.36993 4.49047 4.51983 4.62450 4.78665 4.79478 4.80745 4.98514 5.01178 5.04348 5.07194 5.24355 5.28647 5.33055 5.56301 5.83177 6.10887 6.50070 6.58285 6.64277 6.78894 7.25530 7.42240 8.88342 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.002889 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.172711 B = 9689.781370 C =11939.544010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.245 3.755 3 C -0.039 4.039 4 C 0.108 3.892 5 N -0.590 5.590 6 C 0.260 3.740 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.013 3.987 10 N -0.924 5.924 11 Si 0.957 3.043 12 H -0.268 1.268 13 H -0.274 1.274 14 H -0.285 1.285 15 C 0.506 3.494 16 O -0.567 6.567 17 C 0.052 3.948 18 O -0.345 6.345 19 C 0.472 3.528 20 O -0.519 6.519 21 C -0.072 4.072 22 H 0.131 0.869 23 C -0.112 4.112 24 C -0.114 4.114 25 C -0.079 4.079 26 S -0.285 6.285 27 C -0.072 4.072 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.008 0.992 34 H 0.266 0.734 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 -22.945 -6.441 24.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.073 4.073 3 C -0.080 4.080 4 C -0.017 4.017 5 N -0.321 5.321 6 C 0.139 3.861 7 C -0.580 4.580 8 H 0.073 0.927 9 C -0.187 4.187 10 N -0.564 5.564 11 Si 0.782 3.218 12 H -0.193 1.193 13 H -0.199 1.199 14 H -0.211 1.211 15 C 0.293 3.707 16 O -0.446 6.446 17 C -0.024 4.024 18 O -0.260 6.260 19 C 0.313 3.687 20 O -0.408 6.408 21 C -0.093 4.093 22 H 0.149 0.851 23 C -0.150 4.150 24 C -0.153 4.153 25 C -0.227 4.227 26 S -0.058 6.058 27 C -0.221 4.221 28 H 0.152 0.848 29 H 0.145 0.855 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.075 0.925 35 H 0.148 0.852 36 H 0.134 0.866 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.122 0.878 41 H 0.141 0.859 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.652 -22.768 -6.451 24.117 hybrid contribution -0.494 1.362 -0.333 1.487 sum -5.145 -21.406 -6.785 23.037 Atomic orbital electron populations 1.81256 1.14441 1.10837 1.10047 1.29120 0.94935 0.91413 0.91785 1.19851 0.80160 1.06736 1.01301 1.21631 0.78700 1.04468 0.96883 1.47990 1.06897 1.15628 1.61632 1.18907 0.91726 0.81425 0.94018 1.21771 1.36514 1.03768 0.95935 0.92733 1.25690 0.95207 0.99776 0.97986 1.70019 1.39119 1.25495 1.21778 0.85526 0.77703 0.78900 0.79640 1.19263 1.19913 1.21135 1.20476 0.87707 0.84204 0.78340 1.90721 1.15986 1.82087 1.55790 1.22968 0.90486 0.85919 1.03056 1.86583 1.40854 1.25687 1.72916 1.24111 0.88762 0.82326 0.73457 1.90659 1.17342 1.80280 1.52535 1.21430 0.96036 0.91695 1.00151 0.85128 1.21477 0.97970 0.92643 1.02891 1.21724 0.97997 0.97865 0.97670 1.23654 0.99708 0.97682 1.01618 1.87296 1.17881 1.11620 1.88969 1.23342 0.99225 0.99545 0.99954 0.84778 0.85527 0.88884 0.87813 0.93960 0.97368 0.92531 0.85227 0.86557 0.89588 0.90946 0.89941 0.87774 0.85900 0.88871 0.88780 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.49 18.54 20.01 0.37 -13.12 16 2 C 0.24 5.23 15.43 89.44 1.38 6.61 16 3 C -0.04 -0.68 6.03 28.79 0.17 -0.50 16 4 C 0.11 2.49 5.17 86.38 0.45 2.93 16 5 N -0.59 -20.31 2.46 -826.16 -2.03 -22.34 16 6 C 0.26 12.09 5.16 85.64 0.44 12.53 16 7 C -0.54 -28.50 9.39 25.60 0.24 -28.26 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 9 C 0.01 0.69 5.46 84.65 0.46 1.16 16 10 N -0.92 -52.60 13.29 21.45 0.28 -52.32 16 11 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 13 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 14 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 15 C 0.51 18.03 7.75 87.66 0.68 18.71 16 16 O -0.57 -26.78 16.08 15.77 0.25 -26.52 16 17 C 0.05 1.31 4.50 71.24 0.32 1.63 16 18 O -0.35 -9.45 9.58 -45.07 -0.43 -9.88 16 19 C 0.47 10.58 7.25 71.24 0.52 11.10 16 20 O -0.52 -12.86 15.52 21.98 0.34 -12.52 16 21 C -0.07 -1.21 2.47 -11.65 -0.03 -1.24 16 22 H 0.13 1.99 8.06 -2.39 -0.02 1.98 16 23 C -0.11 -1.40 4.38 30.31 0.13 -1.27 16 24 C -0.11 -0.94 5.75 30.48 0.18 -0.77 16 25 C -0.08 -0.77 6.45 72.01 0.46 -0.31 16 26 S -0.29 -4.98 22.33 -56.49 -1.26 -6.24 16 27 C -0.07 -1.32 5.67 72.02 0.41 -0.91 16 28 H 0.13 1.62 7.22 -2.39 -0.02 1.60 16 29 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.09 2.34 8.07 -2.38 -0.02 2.32 16 31 H 0.10 1.85 6.44 -2.39 -0.02 1.83 16 32 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 33 H 0.01 0.45 7.42 -2.39 -0.02 0.43 16 34 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.13 2.35 7.18 -2.39 -0.02 2.34 16 36 H 0.12 2.51 7.40 -2.39 -0.02 2.49 16 37 H 0.09 1.13 7.70 -2.38 -0.02 1.11 16 38 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 39 H 0.08 0.70 8.06 -2.39 -0.02 0.68 16 40 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.12 0.86 8.14 -2.38 -0.02 0.85 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.11 2.35 8.04 -2.39 -0.02 2.33 16 Total: -1.00 -75.05 388.07 6.38 -68.67 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.01 Total: 7.79 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 5.81 Total: 21.41 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -1.37 Total: -87.78 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: 0.16 Total: -48.93 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -1.26 Total: -6.24 kcal Total: -75.05 6.38 -68.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811410407.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.198 kcal (2) G-P(sol) polarization free energy of solvation -75.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds