Wall clock time and date at job start Tue Mar 31 2020 22:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46851 * 239.99781 * 3 2 1 5 5 H 1.48494 * 109.46780 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46814 * 119.99789 * 3 2 1 7 7 C 1.37881 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00187 * 182.79658 * 7 2 1 9 9 C 1.50698 * 120.00210 * 2.79977 * 7 2 1 10 10 C 1.53006 * 115.55206 * 87.50478 * 9 7 2 11 11 O 1.42902 * 109.46431 * 65.49910 * 10 9 7 12 12 C 1.34924 * 116.99749 * 180.02562 * 11 10 9 13 13 O 1.21633 * 120.00075 * 359.97438 * 12 11 10 14 14 C 1.46149 * 120.00041 * 179.97438 * 12 11 10 15 15 C 1.35071 * 120.00254 * 186.02643 * 14 12 11 16 16 C 1.46924 * 119.99774 * 347.65679 * 15 14 12 17 17 C 1.39817 * 120.23453 * 308.15954 * 16 15 14 18 18 C 1.37846 * 119.93165 * 180.29559 * 17 16 15 19 19 C 1.38566 * 120.43069 * 359.95860 * 18 17 16 20 20 C 1.38065 * 120.48895 * 0.03839 * 19 18 17 21 21 C 1.39130 * 120.04495 * 359.97438 * 20 19 18 22 22 C 1.48228 * 120.21009 * 179.97438 * 21 20 19 23 23 N 1.34125 * 126.68663 * 184.91848 * 22 21 20 24 24 N 1.28981 * 107.26278 * 179.89535 * 23 22 21 25 25 N 1.28729 * 108.96743 * 0.37720 * 24 23 22 26 26 H 0.96999 * 125.33456 * 179.77692 * 25 24 23 27 27 N 1.28876 * 109.33987 * 359.76010 * 25 24 23 28 28 C 1.52999 * 117.50041 * 233.18387 * 9 7 2 29 29 C 1.53002 * 117.49653 * 301.84555 * 9 7 2 30 30 H 0.97005 * 120.00017 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47062 * 305.49963 * 10 9 7 32 32 H 1.08995 * 109.46877 * 185.49236 * 10 9 7 33 33 H 1.08006 * 120.00020 * 6.02716 * 14 12 11 34 34 H 1.07993 * 120.00189 * 167.65842 * 15 14 12 35 35 H 1.07994 * 120.03538 * 0.27583 * 17 16 15 36 36 H 1.08004 * 119.77921 * 180.02562 * 18 17 16 37 37 H 1.08006 * 119.75649 * 180.02562 * 19 18 17 38 38 H 1.07997 * 119.97834 * 180.02562 * 20 19 18 39 39 H 1.09001 * 117.49731 * 214.99797 * 28 9 7 40 40 H 1.09001 * 117.49797 * 0.02562 * 28 9 7 41 41 H 1.09007 * 117.49675 * 359.96840 * 29 9 7 42 42 H 1.08997 * 117.50321 * 144.97358 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0835 -1.1947 0.0462 9 6 1.2523 -2.4984 -0.0626 10 6 0.9293 -3.0065 -1.4692 11 8 2.1438 -3.3288 -2.1498 12 6 2.0341 -3.7940 -3.4115 13 8 0.9362 -3.9226 -3.9189 14 6 3.2344 -4.1435 -4.1685 15 6 3.1347 -4.4926 -5.4694 16 6 1.8183 -4.7854 -6.0526 17 6 0.9630 -5.7030 -5.4351 18 6 -0.2682 -5.9775 -5.9909 19 6 -0.6665 -5.3488 -7.1597 20 6 0.1640 -4.4396 -7.7841 21 6 1.4111 -4.1477 -7.2407 22 6 2.3059 -3.1727 -7.9084 23 7 3.5620 -2.8641 -7.5533 24 7 3.9891 -1.9784 -8.3881 25 7 3.0563 -1.7188 -9.2364 26 1 3.1228 -1.0837 -9.9665 27 7 2.0201 -2.4351 -8.9639 28 6 1.5577 -3.5428 1.0130 29 6 0.2312 -2.7792 1.0416 30 1 -0.4850 0.8401 -0.0004 31 1 0.3975 -2.2322 -2.0220 32 1 0.3047 -3.8971 -1.3993 33 1 4.2013 -4.1225 -3.6876 34 1 4.0225 -4.5567 -6.0810 35 1 1.2668 -6.1965 -4.5238 36 1 -0.9271 -6.6865 -5.5116 37 1 -1.6337 -5.5717 -7.5856 38 1 -0.1549 -3.9541 -8.6946 39 1 1.5285 -4.5919 0.7185 40 1 2.3023 -3.2863 1.7666 41 1 0.1039 -2.0207 1.8141 42 1 -0.6707 -3.3257 0.7661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822805987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:07 Heat of formation + Delta-G solvation = 122.485082 kcal Electronic energy + Delta-G solvation = -28607.674223 eV Core-core repulsion = 24557.958797 eV Total energy + Delta-G solvation = -4049.715425 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.56610 -40.07322 -38.97345 -36.82048 -35.32618 -34.64841 -33.74871 -33.59166 -31.90646 -30.58570 -29.90479 -27.03674 -25.38212 -25.00977 -24.61602 -23.58738 -21.90357 -21.47144 -21.05215 -19.46218 -19.26173 -18.92458 -17.45582 -17.25443 -16.86756 -16.32175 -15.68895 -15.47303 -15.12169 -14.73540 -14.54462 -14.16943 -14.04667 -13.78573 -13.67983 -13.06311 -12.97535 -12.70742 -12.38686 -12.14327 -11.94579 -11.59548 -11.53006 -11.47724 -11.26046 -11.14942 -11.02501 -10.91810 -10.82711 -10.52941 -10.22867 -10.07953 -9.77509 -9.63197 -9.43559 -8.86112 -8.64425 -8.40110 -8.24354 -8.11984 -6.02673 -4.08815 0.51243 0.92718 1.16742 1.79792 2.08898 2.31549 3.32386 3.34275 3.36802 3.40384 3.57941 3.63531 3.83588 4.07701 4.42032 4.65724 4.93476 4.98517 5.12102 5.21647 5.28362 5.32690 5.38713 5.43716 5.56929 5.59344 5.84198 5.97436 6.03392 6.11414 6.17660 6.22892 6.30747 6.36791 6.41450 6.47954 6.54502 6.56868 6.73866 6.79515 6.88724 7.10145 7.30843 7.41740 7.57594 7.89392 8.00805 8.41078 8.54136 8.92954 9.56953 11.05837 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.003379 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.837173 B = 8284.598559 C = 9667.481204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.069 3.931 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.489 4.489 8 H 0.062 0.938 9 C 0.035 3.965 10 C 0.116 3.884 11 O -0.327 6.327 12 C 0.477 3.523 13 O -0.512 6.512 14 C -0.169 4.169 15 C -0.025 4.025 16 C -0.019 4.019 17 C -0.045 4.045 18 C -0.105 4.105 19 C -0.115 4.115 20 C -0.091 4.091 21 C -0.012 4.012 22 C 0.227 3.773 23 N -0.268 5.268 24 N -0.049 5.049 25 N -0.229 5.229 26 H 0.474 0.526 27 N -0.296 5.296 28 C -0.206 4.206 29 C -0.138 4.138 30 H 0.261 0.739 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 -10.292 -18.428 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.526 4.526 8 H 0.080 0.920 9 C 0.034 3.966 10 C 0.042 3.958 11 O -0.242 6.242 12 C 0.323 3.677 13 O -0.404 6.404 14 C -0.188 4.188 15 C -0.043 4.043 16 C -0.022 4.022 17 C -0.063 4.063 18 C -0.124 4.124 19 C -0.133 4.133 20 C -0.111 4.111 21 C -0.016 4.016 22 C -0.053 4.053 23 N -0.141 5.141 24 N -0.044 5.044 25 N -0.075 5.075 26 H 0.328 0.672 27 N -0.148 5.148 28 C -0.244 4.244 29 C -0.176 4.176 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.164 0.836 34 H 0.172 0.828 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.068 -9.812 -18.603 21.255 hybrid contribution -0.179 1.443 -0.372 1.501 sum 2.890 -8.369 -18.975 20.939 Atomic orbital electron populations 1.69996 1.05849 1.26648 1.49413 1.25007 0.94868 0.99020 0.94539 0.86668 0.79665 0.82986 0.78792 1.20146 1.21305 1.20077 1.20363 0.92671 0.88326 1.51264 0.91972 1.18773 0.99543 0.93884 0.84356 1.22469 0.82227 0.97345 0.93789 1.86234 1.38942 1.73717 1.25303 1.21459 0.89666 0.75098 0.81470 1.90884 1.29190 1.50945 1.69381 1.22436 0.97750 1.04771 0.93884 1.22524 0.96444 0.91924 0.93445 1.18877 0.94448 0.96110 0.92734 1.21014 0.92981 0.95397 0.96935 1.21117 0.96036 0.99694 0.95593 1.21062 0.99413 0.96839 0.96011 1.20923 0.92285 0.97818 1.00063 1.17207 0.93163 0.96269 0.94938 1.23678 0.91692 0.97986 0.91903 1.76120 1.09648 1.09587 1.18752 1.78910 1.16059 1.11228 0.98188 1.47699 1.06115 1.29454 1.24218 0.67162 1.74945 1.12807 1.08670 1.18351 1.23012 1.00434 0.95584 1.05331 1.22497 0.90721 1.01196 1.03155 0.92948 0.91490 0.94504 0.83643 0.82843 0.85777 0.85643 0.85594 0.85288 0.91663 0.90155 0.89137 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.32 12.54 55.43 0.69 -24.62 16 2 C 0.07 1.91 5.42 -17.82 -0.10 1.82 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.49 -13.62 8.79 -34.44 -0.30 -13.92 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.03 0.88 1.71 -155.66 -0.27 0.62 16 10 C 0.12 2.78 5.20 37.16 0.19 2.97 16 11 O -0.33 -7.31 10.06 -41.11 -0.41 -7.72 16 12 C 0.48 9.23 7.54 33.90 0.26 9.49 16 13 O -0.51 -10.47 11.84 -19.37 -0.23 -10.70 16 14 C -0.17 -2.54 10.08 -37.54 -0.38 -2.92 16 15 C -0.02 -0.34 7.95 -37.19 -0.30 -0.63 16 16 C -0.02 -0.27 4.34 -104.80 -0.46 -0.73 16 17 C -0.05 -0.61 6.69 -39.13 -0.26 -0.87 16 18 C -0.11 -1.25 10.02 -39.60 -0.40 -1.64 16 19 C -0.12 -1.27 10.02 -39.52 -0.40 -1.66 16 20 C -0.09 -1.09 9.69 -39.31 -0.38 -1.47 16 21 C -0.01 -0.17 5.91 -104.47 -0.62 -0.79 16 22 C 0.23 3.09 7.82 -156.26 -1.22 1.87 16 23 N -0.27 -3.71 9.78 32.13 0.31 -3.39 16 24 N -0.05 -0.58 13.47 60.35 0.81 0.24 16 25 N -0.23 -2.07 7.90 60.35 0.48 -1.59 16 26 H 0.47 1.86 8.96 -340.35 -3.05 -1.19 16 27 N -0.30 -3.45 12.10 32.14 0.39 -3.06 16 28 C -0.21 -4.58 9.96 -26.69 -0.27 -4.85 16 29 C -0.14 -3.28 9.04 -26.69 -0.24 -3.52 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.07 1.79 8.13 -51.93 -0.42 1.37 16 32 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.15 1.85 8.06 -52.48 -0.42 1.42 16 34 H 0.15 1.77 6.99 -52.49 -0.37 1.40 16 35 H 0.12 1.61 7.72 -52.49 -0.41 1.20 16 36 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 37 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.13 1.33 7.89 -52.49 -0.41 0.92 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.09 2.29 8.10 -51.92 -0.42 1.87 16 42 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -33.60 369.32 -10.12 -43.72 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.58 Total: 1.23 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -5.13 Total: -16.23 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 2.69 Total: -32.43 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.64 Total: -18.42 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.60 -10.12 -43.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822805987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.208 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds