Wall clock time and date at job start Tue Mar 31 2020 23:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00033 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00301 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00275 * 3 2 1 7 7 C 1.37885 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47237 * 179.97438 * 10 9 7 12 12 C 1.39675 * 119.99827 * 179.72370 * 11 10 9 13 13 C 1.38909 * 120.07843 * 359.72442 * 12 11 10 14 14 C 1.38098 * 119.92379 * 179.77115 * 13 12 11 15 15 C 1.38282 * 120.07766 * 0.50681 * 14 13 12 16 16 S 1.76199 * 119.92856 * 179.76676 * 15 14 13 17 17 O 1.42106 * 106.40256 * 23.52231 * 16 15 14 18 18 O 1.42100 * 106.40283 * 156.43685 * 16 15 14 19 19 N 1.65598 * 107.21988 * 269.98069 * 16 15 14 20 20 C 1.47148 * 120.97808 * 269.71732 * 19 16 15 21 21 C 1.53713 * 108.16320 * 129.43491 * 20 19 16 22 22 O 1.42963 * 109.14745 * 52.53035 * 21 20 19 23 23 C 1.42960 * 114.16971 * 297.29479 * 22 21 20 24 24 C 1.47145 * 120.98280 * 90.00134 * 19 16 15 25 25 C 1.38290 * 120.14765 * 359.74672 * 15 14 13 26 26 C 1.38100 * 120.07606 * 0.02562 * 25 15 14 27 27 H 0.96999 * 119.99905 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 29 29 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 30 30 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 31 31 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 32 32 H 0.97005 * 119.99811 * 0.02562 * 11 10 9 33 33 H 1.08002 * 120.03229 * 0.02562 * 13 12 11 34 34 H 1.08001 * 119.96359 * 180.25108 * 14 13 12 35 35 H 1.09008 * 109.68100 * 249.20645 * 20 19 16 36 36 H 1.08999 * 109.68960 * 9.76106 * 20 19 16 37 37 H 1.09001 * 109.65435 * 292.57151 * 21 20 19 38 38 H 1.09002 * 109.48929 * 172.39722 * 21 20 19 39 39 H 1.09006 * 109.51169 * 302.65573 * 23 22 21 40 40 H 1.08999 * 109.55393 * 182.52882 * 23 22 21 41 41 H 1.08997 * 109.68454 * 350.22841 * 24 19 16 42 42 H 1.08997 * 109.68500 * 110.75459 * 24 19 16 43 43 H 1.08004 * 119.96085 * 179.97438 * 25 15 14 44 44 H 1.07996 * 120.04178 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 7 1.5126 -4.9309 -0.0020 12 6 2.2110 -6.1405 -0.0077 13 6 3.6000 -6.1423 -0.0187 14 6 4.2874 -7.3401 -0.0195 15 6 3.5944 -8.5368 -0.0200 16 16 4.4753 -10.0627 -0.0273 17 8 5.7605 -9.7867 0.5126 18 8 3.5959 -11.0364 0.5184 19 7 4.7140 -10.4834 -1.6111 20 6 3.7336 -11.3117 -2.3308 21 6 3.3965 -10.6117 -3.6571 22 8 4.6099 -10.3162 -4.3529 23 6 5.4750 -9.4112 -3.6628 24 6 5.9157 -10.0452 -2.3384 25 6 2.2115 -8.5386 -0.0144 26 6 1.5179 -7.3444 -0.0088 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5564 -0.8919 29 1 0.6240 -2.5575 0.8881 30 1 2.8712 -3.6048 0.8890 31 1 2.8725 -3.6040 -0.8909 32 1 0.5425 -4.9308 -0.0028 33 1 4.1418 -5.2080 -0.0224 34 1 5.3674 -7.3423 -0.0240 35 1 4.1594 -12.2953 -2.5295 36 1 2.8302 -11.4169 -1.7299 37 1 2.8573 -9.6859 -3.4563 38 1 2.7772 -11.2686 -4.2679 39 1 4.9433 -8.4810 -3.4620 40 1 6.3514 -9.2043 -4.2769 41 1 6.4581 -9.3110 -1.7427 42 1 6.5578 -10.9032 -2.5374 43 1 1.6733 -9.4750 -0.0153 44 1 0.4379 -7.3464 -0.0048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857589002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:11 Heat of formation + Delta-G solvation = -116.859014 kcal Electronic energy + Delta-G solvation = -27253.160754 eV Core-core repulsion = 23296.217790 eV Total energy + Delta-G solvation = -3956.942964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.49515 -40.10160 -38.39801 -37.28043 -36.95188 -35.78403 -35.12448 -32.48399 -32.31132 -31.91734 -29.67176 -28.02596 -26.60334 -25.15630 -24.27765 -23.44045 -22.43048 -22.17735 -20.06777 -19.22509 -18.89451 -18.46170 -17.88735 -17.43031 -16.96648 -16.60037 -16.40698 -16.27823 -15.97109 -15.93312 -15.62709 -15.55108 -15.06809 -14.89666 -14.48055 -14.37725 -14.18843 -13.96529 -13.63653 -13.29575 -13.27522 -13.20175 -13.06828 -13.02995 -12.71223 -12.53305 -12.47117 -12.29789 -12.09600 -12.00339 -11.61612 -11.45026 -11.41635 -11.30491 -11.15891 -10.61668 -10.05138 -9.83427 -8.68946 -8.27891 -6.38996 -0.64264 0.08691 0.39825 1.40291 1.40766 1.51782 1.90323 2.29348 2.48385 2.59742 2.81421 2.95614 3.07750 3.22720 3.72379 3.77883 3.87786 3.93268 4.19716 4.23416 4.27630 4.30985 4.32877 4.44607 4.45439 4.47472 4.64967 4.70138 4.71301 4.81077 4.86959 4.91936 5.02039 5.05203 5.12742 5.17915 5.24770 5.34702 5.48587 5.52575 5.67007 5.79034 6.06302 6.19936 6.24438 6.65895 6.77505 7.31346 8.84265 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.002306 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.689702 B =12138.108270 C =12509.688585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.020 3.980 10 C 0.139 3.861 11 N -0.729 5.729 12 C 0.260 3.740 13 C -0.233 4.233 14 C 0.024 3.976 15 C -0.749 4.749 16 S 2.717 3.283 17 O -0.985 6.985 18 O -0.983 6.983 19 N -1.001 6.001 20 C 0.082 3.918 21 C 0.044 3.956 22 O -0.394 6.394 23 C 0.045 3.955 24 C 0.082 3.918 25 C 0.023 3.977 26 C -0.224 4.224 27 H 0.265 0.735 28 H 0.002 0.998 29 H 0.000 1.000 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.405 0.595 33 H 0.131 0.869 34 H 0.148 0.852 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.125 0.875 39 H 0.054 0.946 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.154 0.846 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.577 -23.332 -7.035 25.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.017 4.017 10 C 0.016 3.984 11 N -0.352 5.352 12 C 0.151 3.849 13 C -0.256 4.256 14 C 0.003 3.997 15 C -0.840 4.840 16 S 2.811 3.189 17 O -0.976 6.976 18 O -0.973 6.973 19 N -0.841 5.841 20 C -0.043 4.043 21 C -0.034 4.034 22 O -0.313 6.313 23 C -0.033 4.033 24 C -0.043 4.043 25 C 0.003 3.997 26 C -0.248 4.248 27 H 0.074 0.926 28 H 0.020 0.980 29 H 0.019 0.981 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.241 0.759 33 H 0.149 0.851 34 H 0.166 0.834 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.073 0.927 40 H 0.142 0.858 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.172 0.828 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.861 -23.556 -6.474 25.986 hybrid contribution -0.824 2.017 0.174 2.186 sum 8.037 -21.538 -6.300 23.837 Atomic orbital electron populations 1.70069 1.07778 1.28021 1.51100 1.25922 0.95735 1.03343 0.94448 0.85432 0.78698 0.78330 0.78536 1.19733 1.20942 1.18625 1.21486 0.93794 0.91641 1.51358 0.91567 1.19109 0.94458 0.92328 0.95817 1.21392 0.95155 0.81681 1.00209 1.45327 1.09144 1.03134 1.77598 1.18489 0.92271 0.86459 0.87730 1.20930 0.92515 0.99460 1.12729 1.20727 1.00141 0.90258 0.88536 1.30397 1.06392 1.19012 1.28242 1.00953 0.72578 0.73208 0.72160 1.93519 1.40860 1.86280 1.76928 1.93515 1.67731 1.59398 1.76693 1.57755 1.30694 1.65070 1.30552 1.22404 0.92741 0.94784 0.94324 1.23193 0.86610 1.00449 0.93134 1.87931 1.31709 1.65831 1.45811 1.23095 0.95394 0.91639 0.93208 1.22298 0.86072 1.01666 0.94222 1.20765 0.91689 0.98703 0.88569 1.20918 1.00890 0.90573 1.12410 0.92613 0.97957 0.98118 0.92696 0.92369 0.75905 0.85133 0.83410 0.88998 0.87510 0.92615 0.85697 0.92747 0.85796 0.87780 0.88983 0.82830 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.91 13.29 21.45 0.28 -53.63 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.97 42.16 29.54 68.60 2.03 44.19 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.54 -28.91 9.11 25.60 0.23 -28.68 16 8 H 0.07 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 0.98 5.09 29.85 0.15 1.13 16 10 C 0.14 5.21 4.85 86.38 0.42 5.63 16 11 N -0.73 -23.01 5.73 -339.40 -1.95 -24.96 16 12 C 0.26 7.41 6.65 38.22 0.25 7.66 16 13 C -0.23 -6.39 9.31 22.40 0.21 -6.18 16 14 C 0.02 0.57 9.51 22.25 0.21 0.78 16 15 C -0.75 -17.20 5.98 22.29 0.13 -17.07 16 16 S 2.72 59.49 5.70 -56.49 -0.32 59.17 16 17 O -0.99 -26.27 16.08 -128.00 -2.06 -28.33 16 18 O -0.98 -25.37 16.07 -128.00 -2.06 -27.43 16 19 N -1.00 -16.29 3.34 -510.87 -1.70 -17.99 16 20 C 0.08 1.05 6.60 86.50 0.57 1.62 16 21 C 0.04 0.54 7.00 72.22 0.51 1.05 16 22 O -0.39 -6.32 10.74 -148.98 -1.60 -7.92 16 23 C 0.04 0.58 6.99 72.08 0.50 1.08 16 24 C 0.08 1.11 6.57 86.36 0.57 1.68 16 25 C 0.02 0.51 9.51 22.25 0.21 0.72 16 26 C -0.22 -5.41 9.90 22.40 0.22 -5.19 16 27 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.05 2.05 7.97 -2.39 -0.02 2.03 16 31 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 32 H 0.41 12.09 8.49 -92.70 -0.79 11.31 16 33 H 0.13 3.55 6.73 -2.91 -0.02 3.53 16 34 H 0.15 3.00 7.61 -2.91 -0.02 2.98 16 35 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.11 1.20 7.24 -2.39 -0.02 1.18 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.13 0.98 8.14 -2.39 -0.02 0.97 16 39 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.10 1.31 7.25 -2.39 -0.02 1.29 16 42 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.15 2.66 7.61 -2.91 -0.02 2.64 16 44 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -69.43 374.39 -2.50 -71.92 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.23 Total: 20.03 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 4.65 Total: -35.06 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -3.36 Total: -96.58 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -5.71 Total: -63.67 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 59.49 SS G_CDS: -0.32 Total: 59.17 kcal Total: -69.43 -2.50 -71.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857589002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.935 kcal (2) G-P(sol) polarization free energy of solvation -69.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds