Wall clock time and date at job start Tue Mar 31 2020 23:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86792 * 119.99919 * 2 1 4 4 H 1.48503 * 109.47435 * 270.00321 * 3 2 1 5 5 H 1.48504 * 109.47397 * 30.00287 * 3 2 1 6 6 H 1.48503 * 109.47211 * 150.00259 * 3 2 1 7 7 C 1.38699 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99573 * 179.97438 * 7 2 1 9 9 O 1.34815 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.35512 * 116.99981 * 174.50935 * 9 7 2 11 11 C 1.38834 * 120.16130 * 354.17256 * 10 9 7 12 12 C 1.38028 * 120.06965 * 179.72428 * 11 10 9 13 13 C 1.38571 * 120.40511 * 0.02562 * 12 11 10 14 14 C 1.37829 * 120.32050 * 359.95609 * 13 12 11 15 15 C 1.39666 * 119.92382 * 0.04659 * 14 13 12 16 16 C 1.47536 * 120.20060 * 180.02562 * 15 14 13 17 17 O 1.21582 * 120.00110 * 125.80768 * 16 15 14 18 18 N 1.34773 * 119.99371 * 305.79900 * 16 15 14 19 19 C 1.47221 * 121.27237 * 183.90810 * 18 16 15 20 20 C 1.53355 * 107.74584 * 115.88738 * 19 18 16 21 21 C 1.50340 * 110.70432 * 47.35112 * 20 19 18 22 22 C 1.39121 * 118.48866 * 160.61434 * 21 20 19 23 23 N 1.32092 * 119.43579 * 178.96874 * 22 21 20 24 24 C 1.32523 * 120.61955 * 359.97438 * 23 22 21 25 25 N 1.38408 * 119.29712 * 180.25981 * 24 23 22 26 26 N 1.32321 * 121.40357 * 0.25435 * 24 23 22 27 27 C 1.32765 * 120.97759 * 359.95067 * 26 24 23 28 28 C 1.46765 * 121.27659 * 4.19886 * 18 16 15 29 29 H 0.97000 * 120.00244 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.96712 * 359.70313 * 11 10 9 31 31 H 1.07998 * 119.79678 * 180.02562 * 12 11 10 32 32 H 1.08001 * 119.84325 * 179.97438 * 13 12 11 33 33 H 1.07998 * 120.03949 * 180.02562 * 14 13 12 34 34 H 1.09003 * 109.75447 * 235.50875 * 19 18 16 35 35 H 1.08997 * 109.75386 * 356.25001 * 19 18 16 36 36 H 1.09001 * 109.33081 * 286.98321 * 20 19 18 37 37 H 1.08993 * 109.11185 * 167.58852 * 20 19 18 38 38 H 1.07993 * 120.28911 * 358.99010 * 22 21 20 39 39 H 0.97002 * 119.99585 * 0.02562 * 25 24 23 40 40 H 0.96994 * 120.00080 * 179.97438 * 25 24 23 41 41 H 1.08995 * 109.46025 * 344.39168 * 28 18 16 42 42 H 1.09001 * 109.46011 * 104.36833 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0087 -1.2012 -0.0005 8 1 3.0887 -1.2011 -0.0010 9 8 1.3347 -2.3687 -0.0005 10 6 2.0679 -3.5024 -0.1166 11 6 3.4345 -3.4285 -0.3498 12 6 4.1805 -4.5843 -0.4620 13 6 3.5741 -5.8247 -0.3439 14 6 2.2186 -5.9172 -0.1120 15 6 1.4507 -4.7563 0.0038 16 6 -0.0006 -4.8483 0.2526 17 8 -0.4942 -4.2604 1.1954 18 7 -0.7791 -5.5838 -0.5655 19 6 -2.2408 -5.6270 -0.3947 20 6 -2.8760 -5.0070 -1.6453 21 6 -2.2542 -5.5710 -2.8925 22 6 -2.9491 -5.4534 -4.0920 23 7 -2.4110 -5.9241 -5.2027 24 6 -1.2197 -6.5042 -5.1825 25 7 -0.6794 -6.9829 -6.3634 26 7 -0.5357 -6.6354 -4.0574 27 6 -1.0218 -6.1874 -2.9060 28 6 -0.2017 -6.3774 -1.6567 29 1 -0.4850 0.8400 0.0004 30 1 3.9144 -2.4655 -0.4438 31 1 5.2434 -4.5217 -0.6430 32 1 4.1664 -6.7233 -0.4337 33 1 1.7507 -6.8862 -0.0203 34 1 -2.5687 -6.6608 -0.2862 35 1 -2.5256 -5.0549 0.4883 36 1 -2.7284 -3.9272 -1.6274 37 1 -3.9443 -5.2232 -1.6474 38 1 -3.9199 -4.9810 -4.1150 39 1 -1.1718 -6.8916 -7.1942 40 1 0.1920 -7.4089 -6.3605 41 1 0.8215 -6.0506 -1.8413 42 1 -0.2018 -7.4314 -1.3787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857974658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:23 Heat of formation + Delta-G solvation = 7.012465 kcal Electronic energy + Delta-G solvation = -29426.734746 eV Core-core repulsion = 25372.012053 eV Total energy + Delta-G solvation = -4054.722694 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.35089 -41.35260 -40.06379 -38.09119 -37.85960 -35.70557 -34.82966 -34.35392 -33.54635 -31.86996 -30.63526 -30.41020 -27.98409 -27.39333 -25.38009 -24.46079 -24.25945 -23.23684 -22.42732 -20.47112 -19.93438 -19.42493 -18.85913 -18.37583 -17.92387 -17.24161 -16.87464 -16.48612 -16.41766 -16.31255 -15.87702 -15.71204 -15.53019 -15.44198 -15.31756 -14.99824 -14.68626 -14.40796 -14.14112 -14.13051 -13.65234 -13.54485 -13.35470 -12.99403 -12.80192 -12.67932 -12.52602 -12.35229 -12.14262 -11.79911 -11.71390 -11.52181 -11.38628 -10.87335 -10.81017 -10.32679 -9.82127 -9.69619 -9.14140 -9.06728 -8.49785 -6.19112 0.04227 0.16185 0.23537 0.69338 1.31172 1.41803 1.49708 1.61024 1.95673 2.13772 2.24353 2.78693 2.80095 3.03574 3.13130 3.38572 3.45723 3.69536 3.77035 3.81059 3.99454 4.09899 4.25078 4.28719 4.29348 4.34947 4.50531 4.54261 4.60321 4.64918 4.81999 4.92126 4.93712 5.01251 5.06675 5.11840 5.34167 5.44618 5.50244 5.58819 5.69060 5.87815 5.93705 6.14792 6.25372 6.35354 6.37600 6.92316 7.18534 7.38777 7.73129 8.72345 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010175 B = 0.003954 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.144819 B = 7079.763996 C = 7720.811829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.021 4.021 3 Si 1.020 2.980 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.420 4.420 8 H 0.105 0.895 9 O -0.213 6.213 10 C 0.146 3.854 11 C -0.250 4.250 12 C -0.046 4.046 13 C -0.190 4.190 14 C -0.038 4.038 15 C -0.233 4.233 16 C 0.578 3.422 17 O -0.572 6.572 18 N -0.610 5.610 19 C 0.108 3.892 20 C -0.072 4.072 21 C -0.244 4.244 22 C 0.198 3.802 23 N -0.582 5.582 24 C 0.547 3.453 25 N -0.807 5.807 26 N -0.579 5.579 27 C 0.197 3.803 28 C 0.159 3.841 29 H 0.272 0.728 30 H 0.123 0.877 31 H 0.154 0.846 32 H 0.165 0.835 33 H 0.156 0.844 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.126 0.874 38 H 0.199 0.801 39 H 0.423 0.577 40 H 0.422 0.578 41 H 0.107 0.893 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.302 -16.849 -9.803 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.495 4.495 8 H 0.122 0.878 9 O -0.117 6.117 10 C 0.092 3.908 11 C -0.269 4.269 12 C -0.064 4.064 13 C -0.208 4.208 14 C -0.057 4.057 15 C -0.238 4.238 16 C 0.369 3.631 17 O -0.451 6.451 18 N -0.343 5.343 19 C -0.014 4.014 20 C -0.111 4.111 21 C -0.252 4.252 22 C 0.029 3.971 23 N -0.305 5.305 24 C 0.187 3.813 25 N -0.358 5.358 26 N -0.304 5.304 27 C 0.051 3.949 28 C 0.036 3.964 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.172 0.828 32 H 0.183 0.817 33 H 0.174 0.826 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.144 0.856 38 H 0.216 0.784 39 H 0.256 0.744 40 H 0.255 0.745 41 H 0.125 0.875 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.585 -16.705 -10.134 19.547 hybrid contribution -0.092 1.568 0.442 1.631 sum -0.678 -15.137 -9.692 17.987 Atomic orbital electron populations 1.70232 1.08236 1.28747 1.47695 1.26676 0.96795 1.02925 0.95549 0.84581 0.77912 0.74319 0.79333 1.18571 1.19680 1.17333 1.21909 0.92590 0.81398 1.53644 0.87754 1.83983 1.35855 1.12588 1.79268 1.19900 0.91707 0.86951 0.92216 1.21295 0.92863 1.00888 1.11892 1.21410 1.00463 0.91243 0.93324 1.21170 0.94155 0.98350 1.07138 1.21243 0.94469 0.95566 0.94400 1.19108 0.93224 0.92681 1.18776 1.18370 0.86997 0.76501 0.81241 1.90742 1.76101 1.46057 1.32219 1.47944 1.07976 1.47693 1.30727 1.21889 0.78007 1.03095 0.98370 1.20597 1.01616 0.98970 0.89933 1.20847 0.98016 1.07390 0.98936 1.23489 0.99175 0.89076 0.85344 1.67945 1.12677 1.17811 1.32022 1.19607 0.86060 0.88161 0.87449 1.41649 1.24093 1.65025 1.04997 1.67665 1.36949 1.27617 0.98137 1.21289 0.91213 0.89382 0.93037 1.20550 0.96980 0.97610 0.81261 0.91903 0.85908 0.82834 0.81729 0.82620 0.87193 0.90321 0.93114 0.85645 0.78391 0.74446 0.74519 0.87484 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.46 13.67 21.62 0.30 -58.16 16 2 C -0.02 -1.23 5.49 84.85 0.47 -0.76 16 3 Si 1.02 44.06 29.55 68.60 2.03 46.09 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.42 -25.24 9.44 67.93 0.64 -24.60 16 8 H 0.11 5.68 5.30 -2.91 -0.02 5.66 16 9 O -0.21 -13.38 8.96 -16.92 -0.15 -13.54 16 10 C 0.15 7.47 6.64 22.91 0.15 7.62 16 11 C -0.25 -10.71 9.12 22.36 0.20 -10.50 16 12 C -0.05 -1.45 10.03 22.30 0.22 -1.23 16 13 C -0.19 -5.14 10.03 22.25 0.22 -4.92 16 14 C -0.04 -1.20 7.60 22.52 0.17 -1.03 16 15 C -0.23 -10.17 4.83 -19.99 -0.10 -10.27 16 16 C 0.58 26.28 6.88 86.70 0.60 26.87 16 17 O -0.57 -31.89 16.24 -0.92 -0.01 -31.90 16 18 N -0.61 -20.94 2.93 -826.83 -2.42 -23.36 16 19 C 0.11 3.08 6.47 86.36 0.56 3.64 16 20 C -0.07 -1.88 5.92 29.85 0.18 -1.71 16 21 C -0.24 -6.61 5.76 -19.87 -0.11 -6.72 16 22 C 0.20 4.77 10.91 84.87 0.93 5.69 16 23 N -0.58 -15.16 10.46 -197.80 -2.07 -17.23 16 24 C 0.55 14.13 8.68 261.55 2.27 16.40 16 25 N -0.81 -13.88 9.07 -59.83 -0.54 -14.43 16 26 N -0.58 -16.30 10.34 -186.48 -1.93 -18.23 16 27 C 0.20 5.69 6.71 42.30 0.28 5.97 16 28 C 0.16 4.40 5.38 85.56 0.46 4.86 16 29 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 30 H 0.12 5.34 5.72 -2.91 -0.02 5.33 16 31 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 33 H 0.16 3.60 7.41 -2.91 -0.02 3.58 16 34 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.08 2.65 7.06 -2.39 -0.02 2.63 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.13 2.18 8.12 -2.39 -0.02 2.16 16 38 H 0.20 3.30 8.06 -2.91 -0.02 3.27 16 39 H 0.42 5.47 8.95 -92.71 -0.83 4.64 16 40 H 0.42 5.71 8.94 -92.71 -0.83 4.88 16 41 H 0.11 3.24 5.31 -2.39 -0.01 3.23 16 42 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -89.65 356.15 1.80 -87.85 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: -0.54 Total: 33.59 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 7.14 Total: 9.32 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -6.67 Total: -131.41 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -0.17 Total: -45.44 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -89.65 1.80 -87.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857974658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.861 kcal (2) G-P(sol) polarization free energy of solvation -89.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds