Wall clock time and date at job start Tue Mar 31 2020 22:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00177 * 2 1 4 4 H 1.48504 * 109.47097 * 270.00135 * 3 2 1 5 5 H 1.48492 * 109.47035 * 30.00033 * 3 2 1 6 6 H 1.48497 * 109.47238 * 150.00292 * 3 2 1 7 7 C 1.37875 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00430 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47148 * 180.02562 * 9 7 2 11 11 C 1.38235 * 119.99808 * 89.99755 * 10 9 7 12 12 C 1.38243 * 119.99602 * 179.97438 * 11 10 9 13 13 C 1.38231 * 120.00070 * 0.07188 * 12 11 10 14 14 S 1.76203 * 119.99850 * 180.02562 * 13 12 11 15 15 O 1.42104 * 106.40065 * 23.40428 * 14 13 12 16 16 O 1.42098 * 106.40220 * 156.32820 * 14 13 12 17 17 N 1.65606 * 107.21774 * 269.86644 * 14 13 12 18 18 C 1.46498 * 119.99657 * 65.00104 * 17 14 13 19 19 C 1.53001 * 109.46908 * 164.99776 * 18 17 14 20 20 H 1.09000 * 109.50978 * 295.00567 * 19 18 17 21 21 C 1.53097 * 109.50989 * 174.90821 * 19 18 17 22 22 O 1.43018 * 109.25556 * 183.26132 * 21 19 18 23 23 C 1.43014 * 113.77480 * 58.61088 * 22 21 19 24 24 C 1.53100 * 109.25564 * 301.34887 * 23 22 21 25 25 N 1.47009 * 109.25948 * 56.84944 * 24 23 22 26 26 C 1.38234 * 119.99869 * 359.88510 * 13 12 11 27 27 C 1.38230 * 119.99865 * 269.97500 * 10 9 7 28 28 H 0.97003 * 119.99841 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47576 * 59.99566 * 9 7 2 30 30 H 1.09001 * 109.46592 * 299.99504 * 9 7 2 31 31 H 1.08000 * 120.00616 * 359.70324 * 11 10 9 32 32 H 1.08001 * 119.99556 * 179.97438 * 12 11 10 33 33 H 0.96999 * 119.99637 * 244.99836 * 17 14 13 34 34 H 1.08993 * 109.47390 * 284.99600 * 18 17 14 35 35 H 1.09001 * 109.47445 * 45.00314 * 18 17 14 36 36 H 1.08995 * 109.51013 * 303.15926 * 21 19 18 37 37 H 1.09006 * 109.50176 * 63.28315 * 21 19 18 38 38 H 1.08998 * 109.50618 * 181.41647 * 23 22 21 39 39 H 1.08999 * 109.54603 * 61.30586 * 23 22 21 40 40 H 1.09000 * 109.50764 * 296.91437 * 24 23 22 41 41 H 1.09001 * 109.54151 * 176.81195 * 24 23 22 42 42 H 1.00897 * 110.99834 * 65.15809 * 25 24 23 43 43 H 1.08007 * 119.99474 * 180.10845 * 26 13 12 44 44 H 1.08001 * 120.00350 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6785 -4.1704 1.1958 12 6 3.5764 -5.2215 1.1960 13 6 4.0272 -5.7457 -0.0010 14 16 5.1712 -7.0859 -0.0007 15 8 5.0177 -7.7441 1.2493 16 8 5.0175 -7.7448 -1.2503 17 7 6.6925 -6.4317 -0.0010 18 6 7.1537 -5.6495 1.1486 19 6 8.6727 -5.4820 1.0752 20 1 9.1517 -6.4557 1.1784 21 6 9.1406 -4.5598 2.2041 22 8 10.5497 -4.3460 2.0850 23 6 10.9419 -3.7693 0.8365 24 6 10.4924 -4.6844 -0.3057 25 7 9.0393 -4.8895 -0.2194 26 6 3.5782 -5.2204 -1.1982 27 6 2.6799 -4.1697 -1.1985 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5563 -0.8918 30 1 0.6241 -2.5574 0.8881 31 1 2.3306 -3.7573 2.1311 32 1 3.9270 -5.6320 2.1314 33 1 7.2782 -6.5665 -0.7624 34 1 6.6790 -4.6685 1.1346 35 1 6.8895 -6.1679 2.0704 36 1 8.6208 -3.6044 2.1327 37 1 8.9220 -5.0227 3.1664 38 1 12.0261 -3.6604 0.8104 39 1 10.4751 -2.7907 0.7241 40 1 11.0011 -5.6449 -0.2242 41 1 10.7387 -4.2222 -1.2616 42 1 8.5422 -4.0254 -0.3752 43 1 3.9291 -5.6312 -2.1335 44 1 2.3291 -3.7594 -2.1339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886889151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:21 Heat of formation + Delta-G solvation = -100.717592 kcal Electronic energy + Delta-G solvation = -27336.783526 eV Core-core repulsion = 23380.540507 eV Total energy + Delta-G solvation = -3956.243019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.09524 -38.81575 -37.15098 -36.29880 -35.74587 -34.11989 -33.70424 -31.64456 -31.57260 -30.58948 -27.45519 -27.20713 -25.56772 -23.75551 -22.98992 -22.34074 -21.42818 -20.90213 -19.38315 -17.86680 -17.45090 -16.88501 -16.55264 -16.48538 -16.04593 -15.71650 -15.59947 -15.24679 -15.09722 -14.68021 -14.40069 -14.19029 -13.92558 -13.62319 -13.12271 -12.94520 -12.93710 -12.74544 -12.22257 -12.13414 -12.00955 -11.91830 -11.81024 -11.73315 -11.62701 -11.51473 -11.32815 -10.96193 -10.93466 -10.58569 -10.55178 -10.50641 -9.86768 -9.69974 -9.55006 -8.70487 -8.61189 -8.57335 -8.40131 -6.20814 -4.26203 0.53341 1.32049 1.77979 3.05097 3.19210 3.26236 3.28512 3.38657 3.67240 3.78298 4.10316 4.24419 4.33065 4.38948 4.55009 4.57876 4.65742 4.75496 4.90048 5.06645 5.13171 5.18989 5.19326 5.22785 5.24215 5.32837 5.47580 5.56583 5.68884 5.70701 5.84484 5.89579 6.23480 6.31734 6.40477 6.49707 6.64806 6.82288 6.84675 6.88799 6.98277 7.27301 7.41487 7.57187 7.73525 8.09380 8.78198 9.38550 10.89310 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009159 B = 0.003458 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.379397 B = 8094.437795 C =10335.864093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.038 3.962 10 C 0.026 3.974 11 C -0.146 4.146 12 C -0.026 4.026 13 C -0.704 4.704 14 S 2.700 3.300 15 O -0.968 6.968 16 O -0.966 6.966 17 N -1.110 6.110 18 C 0.125 3.875 19 C 0.047 3.953 20 H 0.101 0.899 21 C 0.026 3.974 22 O -0.378 6.378 23 C 0.018 3.982 24 C 0.023 3.977 25 N -0.678 5.678 26 C -0.020 4.020 27 C -0.146 4.146 28 H 0.264 0.736 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.424 0.576 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.347 0.653 43 H 0.130 0.870 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.820 -9.631 1.301 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.002 3.998 10 C 0.026 3.974 11 C -0.165 4.165 12 C -0.046 4.046 13 C -0.793 4.793 14 S 2.792 3.208 15 O -0.958 6.958 16 O -0.957 6.957 17 N -0.870 5.870 18 C -0.003 4.003 19 C -0.065 4.065 20 H 0.119 0.881 21 C -0.053 4.053 22 O -0.296 6.296 23 C -0.060 4.060 24 C -0.107 4.107 25 N -0.309 5.309 26 C -0.040 4.040 27 C -0.165 4.165 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.261 0.739 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.166 0.834 43 H 0.148 0.852 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 18.492 -11.047 1.268 21.578 hybrid contribution 0.330 2.670 0.025 2.690 sum 18.822 -8.377 1.293 20.643 Atomic orbital electron populations 1.69945 1.06078 1.27143 1.49682 1.25006 0.94915 0.99362 0.94861 0.86489 0.79741 0.82907 0.78281 1.20459 1.21008 1.19822 1.20940 0.92978 0.89474 1.52132 0.92374 1.18542 0.92668 0.89546 0.99080 1.21105 0.92036 0.92191 0.92068 1.21240 0.99255 0.97126 0.98852 1.20781 0.94298 0.93794 0.95708 1.30350 1.23653 1.25480 0.99846 1.01495 0.72382 0.73656 0.73284 1.93551 1.85759 1.71902 1.44540 1.93566 1.85571 1.72603 1.43925 1.55355 1.32881 1.70648 1.28149 1.21219 0.93524 0.96383 0.89128 1.22417 0.95507 0.99790 0.88790 0.88123 1.23273 0.82394 0.99299 1.00381 1.88082 1.22662 1.83127 1.35732 1.23328 1.01561 0.95958 0.85201 1.22666 0.88706 1.00728 0.98602 1.60791 1.06236 1.32840 1.31043 1.20775 0.93888 0.93531 0.95802 1.21248 0.99235 0.97124 0.98874 0.92585 0.94705 0.94704 0.85400 0.85320 0.73921 0.91244 0.89316 0.92351 0.87660 0.88288 0.92914 0.89780 0.89294 0.83435 0.85241 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.52 -13.62 9.09 -34.44 -0.31 -13.93 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.93 5.10 -29.03 -0.15 0.78 16 10 C 0.03 0.53 5.07 -104.63 -0.53 0.00 16 11 C -0.15 -2.62 9.70 -39.58 -0.38 -3.00 16 12 C -0.03 -0.41 9.52 -39.58 -0.38 -0.79 16 13 C -0.70 -10.66 5.95 -39.59 -0.24 -10.89 16 14 S 2.70 36.05 5.74 -107.50 -0.62 35.43 16 15 O -0.97 -14.93 16.75 -57.17 -0.96 -15.89 16 16 O -0.97 -15.32 17.28 -57.17 -0.99 -16.30 16 17 N -1.11 -11.02 5.91 -10.62 -0.06 -11.08 16 18 C 0.12 1.06 5.85 -4.04 -0.02 1.04 16 19 C 0.05 0.35 2.85 -67.60 -0.19 0.16 16 20 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 21 C 0.03 0.20 6.29 37.21 0.23 0.43 16 22 O -0.38 -3.47 10.82 -35.23 -0.38 -3.85 16 23 C 0.02 0.12 7.01 37.21 0.26 0.38 16 24 C 0.02 0.14 6.76 -3.71 -0.03 0.12 16 25 N -0.68 -5.00 5.85 -106.45 -0.62 -5.62 16 26 C -0.02 -0.33 9.52 -39.58 -0.38 -0.70 16 27 C -0.15 -2.66 9.70 -39.59 -0.38 -3.04 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 30 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 32 H 0.13 1.68 7.62 -52.49 -0.40 1.28 16 33 H 0.42 3.82 8.10 -34.47 -0.28 3.54 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.71 7.75 -51.93 -0.40 0.31 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.35 2.52 8.79 -39.29 -0.35 2.17 16 43 H 0.13 1.80 7.62 -52.48 -0.40 1.40 16 44 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -32.85 377.73 -11.25 -44.10 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.44 Total: 4.40 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -2.59 Total: -27.90 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.05 Total: -41.14 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -2.33 Total: -36.04 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 36.05 SS G_CDS: -0.62 Total: 35.43 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.85 -11.25 -44.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886889151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.618 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds