Wall clock time and date at job start Tue Mar 31 2020 22:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00177 * 2 1 4 4 H 1.48504 * 109.47097 * 270.00135 * 3 2 1 5 5 H 1.48492 * 109.47035 * 30.00033 * 3 2 1 6 6 H 1.48497 * 109.47238 * 150.00292 * 3 2 1 7 7 C 1.37875 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00430 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47148 * 180.02562 * 9 7 2 11 11 C 1.38235 * 119.99808 * 89.99755 * 10 9 7 12 12 C 1.38243 * 119.99602 * 179.97438 * 11 10 9 13 13 C 1.38231 * 120.00070 * 0.07188 * 12 11 10 14 14 S 1.76203 * 119.99850 * 180.02562 * 13 12 11 15 15 O 1.42104 * 106.40065 * 23.40428 * 14 13 12 16 16 O 1.42098 * 106.40220 * 156.32820 * 14 13 12 17 17 N 1.65606 * 107.21774 * 269.86644 * 14 13 12 18 18 C 1.46498 * 119.99657 * 65.00104 * 17 14 13 19 19 C 1.53001 * 109.46908 * 164.99776 * 18 17 14 20 20 H 1.09000 * 109.50978 * 295.00567 * 19 18 17 21 21 C 1.53097 * 109.50989 * 174.90821 * 19 18 17 22 22 O 1.43018 * 109.25556 * 183.26132 * 21 19 18 23 23 C 1.43014 * 113.77480 * 58.61088 * 22 21 19 24 24 C 1.53100 * 109.25564 * 301.34887 * 23 22 21 25 25 N 1.47009 * 109.25948 * 56.84944 * 24 23 22 26 26 C 1.38234 * 119.99869 * 359.88510 * 13 12 11 27 27 C 1.38230 * 119.99865 * 269.97500 * 10 9 7 28 28 H 0.97003 * 119.99841 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47576 * 59.99566 * 9 7 2 30 30 H 1.09001 * 109.46592 * 299.99504 * 9 7 2 31 31 H 1.08000 * 120.00616 * 359.70324 * 11 10 9 32 32 H 1.08001 * 119.99556 * 179.97438 * 12 11 10 33 33 H 0.96999 * 119.99637 * 244.99836 * 17 14 13 34 34 H 1.08993 * 109.47390 * 284.99600 * 18 17 14 35 35 H 1.09001 * 109.47445 * 45.00314 * 18 17 14 36 36 H 1.08995 * 109.51013 * 303.15926 * 21 19 18 37 37 H 1.09006 * 109.50176 * 63.28315 * 21 19 18 38 38 H 1.08998 * 109.50618 * 181.41647 * 23 22 21 39 39 H 1.08999 * 109.54603 * 61.30586 * 23 22 21 40 40 H 1.09000 * 109.50764 * 296.91437 * 24 23 22 41 41 H 1.09001 * 109.54151 * 176.81195 * 24 23 22 42 42 H 1.00897 * 110.99834 * 65.15809 * 25 24 23 43 43 H 1.08007 * 119.99474 * 180.10845 * 26 13 12 44 44 H 1.08001 * 120.00350 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6785 -4.1704 1.1958 12 6 3.5764 -5.2215 1.1960 13 6 4.0272 -5.7457 -0.0010 14 16 5.1712 -7.0859 -0.0007 15 8 5.0177 -7.7441 1.2493 16 8 5.0175 -7.7448 -1.2503 17 7 6.6925 -6.4317 -0.0010 18 6 7.1537 -5.6495 1.1486 19 6 8.6727 -5.4820 1.0752 20 1 9.1517 -6.4557 1.1784 21 6 9.1406 -4.5598 2.2041 22 8 10.5497 -4.3460 2.0850 23 6 10.9419 -3.7693 0.8365 24 6 10.4924 -4.6844 -0.3057 25 7 9.0393 -4.8895 -0.2194 26 6 3.5782 -5.2204 -1.1982 27 6 2.6799 -4.1697 -1.1985 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5563 -0.8918 30 1 0.6241 -2.5574 0.8881 31 1 2.3306 -3.7573 2.1311 32 1 3.9270 -5.6320 2.1314 33 1 7.2782 -6.5665 -0.7624 34 1 6.6790 -4.6685 1.1346 35 1 6.8895 -6.1679 2.0704 36 1 8.6208 -3.6044 2.1327 37 1 8.9220 -5.0227 3.1664 38 1 12.0261 -3.6604 0.8104 39 1 10.4751 -2.7907 0.7241 40 1 11.0011 -5.6449 -0.2242 41 1 10.7387 -4.2222 -1.2616 42 1 8.5422 -4.0254 -0.3752 43 1 3.9291 -5.6312 -2.1335 44 1 2.3291 -3.7594 -2.1339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886889151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:20 Heat of formation + Delta-G solvation = -125.836237 kcal Electronic energy + Delta-G solvation = -27337.872752 eV Core-core repulsion = 23380.540507 eV Total energy + Delta-G solvation = -3957.332245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.67078 -40.20874 -38.31582 -37.02202 -36.92084 -35.58238 -34.75607 -33.29961 -32.26082 -31.93444 -29.22940 -27.80215 -26.19390 -25.57747 -23.76382 -23.49063 -22.45708 -21.98613 -20.45528 -18.98540 -18.56019 -18.44822 -17.69601 -17.16690 -16.86339 -16.81480 -16.44303 -16.23217 -16.11017 -15.94914 -15.68563 -15.25278 -15.03553 -14.62665 -14.42511 -14.37904 -13.86618 -13.62375 -13.50051 -13.40470 -13.38968 -13.17973 -13.11128 -12.89042 -12.66957 -12.60596 -12.31265 -12.19032 -12.09291 -12.01736 -11.98868 -11.65903 -11.42863 -11.15399 -10.64764 -10.45333 -9.93749 -9.92694 -9.26141 -8.25608 -6.38798 -0.57590 -0.03344 0.42382 1.39699 1.39923 1.51059 2.04544 2.35632 2.59960 2.83958 2.86707 3.07358 3.12252 3.35322 3.71286 3.80833 3.92067 4.00455 4.01494 4.14405 4.17790 4.21721 4.38033 4.48930 4.49249 4.50567 4.56042 4.71273 4.81367 4.83392 4.87034 4.93480 5.01456 5.06540 5.13688 5.26249 5.27282 5.36009 5.68058 5.85900 5.88088 5.94468 6.10168 6.10695 6.19737 6.31813 6.73414 7.30455 8.84797 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009159 B = 0.003458 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.379397 B = 8094.437795 C =10335.864093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.046 3.954 10 C -0.003 4.003 11 C -0.154 4.154 12 C -0.019 4.019 13 C -0.699 4.699 14 S 2.729 3.271 15 O -0.982 6.982 16 O -0.987 6.987 17 N -1.095 6.095 18 C 0.117 3.883 19 C 0.055 3.945 20 H 0.099 0.901 21 C 0.024 3.976 22 O -0.399 6.399 23 C 0.015 3.985 24 C 0.026 3.974 25 N -0.684 5.684 26 C -0.017 4.017 27 C -0.156 4.156 28 H 0.266 0.734 29 H 0.009 0.991 30 H 0.011 0.989 31 H 0.130 0.870 32 H 0.159 0.841 33 H 0.432 0.568 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.348 0.652 43 H 0.153 0.847 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.389 -10.072 1.431 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.009 3.991 10 C -0.004 4.004 11 C -0.173 4.173 12 C -0.038 4.038 13 C -0.786 4.786 14 S 2.819 3.181 15 O -0.972 6.972 16 O -0.977 6.977 17 N -0.859 5.859 18 C -0.010 4.010 19 C -0.057 4.057 20 H 0.117 0.883 21 C -0.055 4.055 22 O -0.318 6.318 23 C -0.063 4.063 24 C -0.103 4.103 25 N -0.315 5.315 26 C -0.037 4.037 27 C -0.175 4.175 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.029 0.971 31 H 0.148 0.852 32 H 0.176 0.824 33 H 0.270 0.730 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.120 0.880 42 H 0.167 0.833 43 H 0.171 0.829 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 21.056 -11.483 1.389 24.024 hybrid contribution -0.386 2.708 -0.011 2.735 sum 20.670 -8.775 1.378 22.498 Atomic orbital electron populations 1.70071 1.07748 1.28117 1.50888 1.25911 0.95718 1.03132 0.94408 0.85426 0.78662 0.78307 0.78559 1.19751 1.20705 1.18704 1.21288 0.93203 0.90702 1.51536 0.92234 1.18274 0.93042 0.91107 0.96627 1.20794 0.93119 0.92450 0.94002 1.21299 0.99937 0.98012 0.98069 1.21054 0.92959 0.92536 0.97209 1.30799 1.23309 1.25074 0.99388 1.00664 0.72438 0.72762 0.72280 1.93535 1.86285 1.72147 1.45250 1.93538 1.86175 1.73108 1.44929 1.55038 1.31267 1.70559 1.28999 1.21438 0.94278 0.96501 0.88773 1.22301 0.94625 0.99747 0.89010 0.88296 1.23335 0.81882 0.99428 1.00851 1.88054 1.23405 1.83382 1.36937 1.23450 1.02326 0.95934 0.84588 1.22672 0.88006 1.00604 0.99047 1.60809 1.06905 1.32969 1.30842 1.21002 0.92858 0.92515 0.97284 1.21282 1.00010 0.98060 0.98142 0.92469 0.97246 0.97088 0.85246 0.82370 0.72998 0.90734 0.88368 0.92256 0.86778 0.87183 0.92833 0.90058 0.87973 0.83328 0.82901 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.99 13.29 21.45 0.28 -53.71 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.53 -28.53 9.09 25.60 0.23 -28.30 16 8 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 9 C 0.05 2.35 5.10 29.10 0.15 2.50 16 10 C 0.00 -0.14 5.07 -19.87 -0.10 -0.24 16 11 C -0.15 -5.50 9.70 22.27 0.22 -5.29 16 12 C -0.02 -0.54 9.52 22.27 0.21 -0.33 16 13 C -0.70 -19.60 5.95 22.27 0.13 -19.47 16 14 S 2.73 65.54 5.74 -56.49 -0.32 65.21 16 15 O -0.98 -27.49 16.75 -128.00 -2.14 -29.63 16 16 O -0.99 -28.81 17.28 -128.00 -2.21 -31.02 16 17 N -1.09 -18.61 5.91 -187.50 -1.11 -19.72 16 18 C 0.12 1.66 5.85 86.38 0.50 2.17 16 19 C 0.06 0.70 2.85 44.93 0.13 0.83 16 20 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 21 C 0.02 0.32 6.29 72.01 0.45 0.77 16 22 O -0.40 -6.65 10.82 -148.98 -1.61 -8.27 16 23 C 0.02 0.18 7.01 72.02 0.50 0.68 16 24 C 0.03 0.27 6.76 86.32 0.58 0.86 16 25 N -0.68 -8.50 5.85 -490.70 -2.87 -11.37 16 26 C -0.02 -0.53 9.52 22.27 0.21 -0.32 16 27 C -0.16 -5.70 9.70 22.27 0.22 -5.48 16 28 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.01 0.50 8.09 -2.39 -0.02 0.48 16 30 H 0.01 0.59 8.08 -2.39 -0.02 0.57 16 31 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.16 3.64 7.62 -2.91 -0.02 3.62 16 33 H 0.43 6.51 8.10 -96.75 -0.78 5.73 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 1.26 7.75 -2.39 -0.02 1.24 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.35 4.24 8.79 -89.70 -0.79 3.45 16 43 H 0.15 3.89 7.62 -2.91 -0.02 3.86 16 44 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -70.57 377.73 -4.60 -75.18 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -0.55 Total: 19.97 kcal Atomic # 6 Polarization: -54.67 SS G_CDS: 3.91 Total: -50.76 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -3.70 Total: -84.80 kcal Atomic # 8 Polarization: -62.95 SS G_CDS: -5.97 Total: -68.92 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 65.54 SS G_CDS: -0.32 Total: 65.21 kcal Total: -70.57 -4.60 -75.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886889151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.660 kcal (2) G-P(sol) polarization free energy of solvation -70.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds