Wall clock time and date at job start Tue Mar 31 2020 23:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38359 * 119.84920 * 2 1 4 4 C 1.37957 * 120.14871 * 180.02562 * 3 2 1 5 5 C 1.39606 * 119.84782 * 359.97438 * 4 3 2 6 6 C 1.47650 * 120.14946 * 179.97438 * 5 4 3 7 7 N 1.29080 * 125.86146 * 0.02562 * 6 5 4 8 8 O 1.41489 * 112.88084 * 179.67116 * 7 6 5 9 9 C 1.44204 * 107.54398 * 17.50071 * 8 7 6 10 10 H 1.08995 * 110.97146 * 216.45484 * 9 8 7 11 11 C 1.50707 * 110.97335 * 92.71985 * 9 8 7 12 12 O 1.21303 * 119.99559 * 359.49972 * 11 9 8 13 13 N 1.34775 * 119.99856 * 179.49944 * 11 9 8 14 14 C 1.40593 * 119.99462 * 180.02562 * 13 11 9 15 15 C 1.40648 * 126.08720 * 359.97438 * 14 13 11 16 16 N 1.30906 * 108.38919 * 179.77422 * 15 14 13 17 17 N 1.40074 * 108.40643 * 0.38364 * 16 15 14 18 18 C 1.37325 * 126.06775 * 179.88071 * 17 16 15 19 19 H 1.07997 * 119.99559 * 179.68505 * 18 17 16 20 20 C 1.38985 * 119.99974 * 359.68084 * 18 17 16 21 21 N 1.31297 * 120.00237 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99828 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46906 * 300.00508 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00246 * 22 20 18 26 26 C 1.35688 * 126.07995 * 179.97438 * 14 13 11 27 27 C 1.51692 * 125.86777 * 179.97438 * 6 5 4 28 28 C 1.39613 * 119.70619 * 0.25050 * 5 4 3 29 29 C 1.37955 * 119.84418 * 359.53990 * 28 5 4 30 30 H 1.09005 * 109.47199 * 90.00432 * 1 2 3 31 31 H 1.08998 * 109.47210 * 210.00358 * 1 2 3 32 32 H 1.08999 * 109.47246 * 330.00868 * 1 2 3 33 33 H 1.07995 * 119.92601 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.07759 * 179.97438 * 4 3 2 35 35 H 0.96996 * 120.00337 * 359.97438 * 13 11 9 36 36 H 1.08001 * 125.80214 * 359.97438 * 15 14 13 37 37 H 0.97001 * 119.99764 * 179.97438 * 21 20 18 38 38 H 1.08000 * 126.24112 * 0.02562 * 26 14 13 39 39 H 1.09005 * 110.78695 * 46.34784 * 27 6 5 40 40 H 1.08996 * 110.96219 * 282.95350 * 27 6 5 41 41 H 1.08000 * 120.07958 * 179.72432 * 28 5 4 42 42 H 1.08002 * 119.92443 * 180.18475 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2000 0.0000 4 6 3.5752 1.2073 -0.0005 5 6 4.2763 0.0000 -0.0005 6 6 5.7528 0.0000 -0.0017 7 7 6.5090 1.0461 -0.0023 8 8 7.8877 0.7282 0.0042 9 6 8.0183 -0.6486 -0.4042 10 1 8.8237 -1.1421 0.1397 11 6 8.2336 -0.7519 -1.8922 12 8 8.2669 0.2527 -2.5713 13 7 8.3893 -1.9603 -2.4683 14 6 8.5907 -2.0565 -3.8564 15 6 8.6513 -0.9814 -4.7612 16 7 8.8551 -1.4626 -5.9614 17 7 8.9236 -2.8589 -5.8723 18 6 9.1250 -3.7268 -6.9173 19 1 9.1659 -4.7905 -6.7354 20 6 9.2760 -3.2362 -8.2089 21 7 9.2266 -1.9429 -8.4299 22 14 9.5491 -4.4169 -9.6304 23 1 9.6783 -3.6483 -10.8944 24 1 10.7911 -5.1961 -9.3950 25 1 8.3943 -5.3450 -9.7319 26 6 8.7612 -3.2031 -4.5616 27 6 6.6415 -1.2293 -0.0013 28 6 3.5752 -1.2073 -0.0053 29 6 2.1956 -1.2000 -0.0004 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5137 33 1 1.6520 2.1332 -0.0004 34 1 4.1115 2.1447 -0.0010 35 1 8.3630 -2.7635 -1.9252 36 1 8.5504 0.0637 -4.5082 37 1 9.3324 -1.6005 -9.3313 38 1 8.7663 -4.2054 -4.1592 39 1 6.2975 -1.9556 -0.7377 40 1 6.6859 -1.6781 0.9910 41 1 4.1115 -2.1447 -0.0098 42 1 1.6519 -2.1332 -0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900438939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:35 Heat of formation + Delta-G solvation = 97.695895 kcal Electronic energy + Delta-G solvation = -27801.290091 eV Core-core repulsion = 23750.499726 eV Total energy + Delta-G solvation = -4050.790365 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.85129 -39.77338 -39.31629 -38.00471 -34.49004 -34.17861 -33.24576 -31.81799 -31.57132 -30.91144 -30.18397 -27.78956 -27.32468 -25.33718 -24.27193 -22.72273 -22.56197 -21.14932 -20.56691 -19.92652 -19.46228 -17.81788 -17.31821 -17.00036 -15.94936 -15.76222 -15.50972 -15.44877 -15.20019 -14.98449 -14.56216 -14.24977 -14.09601 -13.84784 -13.76906 -13.36896 -13.25927 -13.17773 -12.89529 -12.63874 -12.58146 -12.21331 -12.04612 -11.69590 -11.61643 -11.45909 -11.40936 -11.25474 -10.99992 -10.82831 -10.57631 -10.34228 -10.20740 -9.26120 -9.19174 -9.12281 -8.82997 -8.56476 -8.08521 -6.74898 -6.57282 -4.25270 0.46871 1.11290 2.02835 2.60138 2.92703 3.02254 3.04650 3.07802 3.38152 3.52222 3.63702 3.75924 3.83892 4.19891 4.25532 4.41645 4.52631 4.55788 4.61974 4.69424 4.87639 4.98983 5.00299 5.04623 5.07374 5.23407 5.24857 5.26553 5.33433 5.44152 5.54718 5.72194 5.77266 6.11410 6.14379 6.20337 6.26044 6.40866 6.62028 6.83898 6.92047 7.05225 7.20100 7.23272 7.83195 8.09707 8.23659 8.58313 8.77471 9.35302 9.64397 10.38561 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.002436 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.428801 B =11490.690091 C =12756.139187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.069 4.069 3 C -0.124 4.124 4 C -0.074 4.074 5 C -0.044 4.044 6 C 0.121 3.879 7 N -0.271 5.271 8 O -0.163 6.163 9 C 0.030 3.970 10 H 0.139 0.861 11 C 0.480 3.520 12 O -0.509 6.509 13 N -0.619 5.619 14 C -0.062 4.062 15 C -0.032 4.032 16 N -0.260 5.260 17 N -0.141 5.141 18 C -0.324 4.324 19 H 0.116 0.884 20 C 0.046 3.954 21 N -0.769 5.769 22 Si 0.935 3.065 23 H -0.276 1.276 24 H -0.267 1.267 25 H -0.267 1.267 26 C -0.083 4.083 27 C -0.139 4.139 28 C -0.081 4.081 29 C -0.124 4.124 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.396 0.604 36 H 0.175 0.825 37 H 0.276 0.724 38 H 0.146 0.854 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.130 0.870 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.640 -2.852 18.958 23.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.070 4.070 3 C -0.142 4.142 4 C -0.094 4.094 5 C -0.045 4.045 6 C -0.069 4.069 7 N -0.011 5.011 8 O -0.181 6.181 9 C -0.033 4.033 10 H 0.157 0.843 11 C 0.263 3.737 12 O -0.384 6.384 13 N -0.263 5.263 14 C -0.167 4.167 15 C -0.207 4.207 16 N -0.091 5.091 17 N 0.092 4.908 18 C -0.456 4.456 19 H 0.134 0.866 20 C -0.172 4.172 21 N -0.395 5.395 22 Si 0.759 3.241 23 H -0.201 1.201 24 H -0.191 1.191 25 H -0.192 1.192 26 C -0.235 4.235 27 C -0.179 4.179 28 C -0.101 4.101 29 C -0.142 4.142 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.229 0.771 36 H 0.191 0.809 37 H 0.087 0.913 38 H 0.163 0.837 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.148 0.852 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.138 -0.393 17.094 21.563 hybrid contribution 0.258 -2.191 0.457 2.253 sum -12.880 -2.584 17.552 21.923 Atomic orbital electron populations 1.20855 0.90899 1.02981 1.02730 1.20133 0.96390 0.93170 0.97319 1.21007 0.93728 0.97916 1.01530 1.21361 0.94200 0.97636 0.96191 1.17759 0.87085 0.94443 1.05215 1.24204 0.94252 0.92539 0.95898 1.78438 0.89065 1.21872 1.11734 1.91346 1.15606 1.25787 1.85359 1.23591 0.99417 0.85775 0.94486 0.84329 1.20453 0.79962 0.84047 0.89199 1.90662 1.48940 1.35632 1.63151 1.42406 1.69868 1.07378 1.06659 1.17236 1.23202 0.94178 0.82104 1.24109 1.07438 0.99303 0.89879 1.78278 1.25292 0.87047 1.18459 1.44559 1.38130 1.04748 1.03409 1.19826 1.51836 0.89195 0.84725 0.86631 1.25653 0.95615 0.96641 0.99243 1.70209 1.34988 1.11920 1.22406 0.85890 0.79485 0.79522 0.79222 1.20111 1.19135 1.19151 1.21231 1.19354 0.96931 0.85939 1.23013 0.90868 0.98653 1.05346 1.21214 0.94324 0.96881 0.97726 1.20958 0.93667 0.97885 1.01653 0.90730 0.91298 0.91320 0.85378 0.84860 0.77085 0.80865 0.91347 0.83663 0.87256 0.86703 0.85174 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.00 36.00 0.36 -0.30 16 2 C -0.07 -0.56 5.89 -104.53 -0.62 -1.18 16 3 C -0.12 -1.11 9.68 -39.64 -0.38 -1.49 16 4 C -0.07 -0.81 9.69 -39.17 -0.38 -1.19 16 5 C -0.04 -0.50 5.87 -105.03 -0.62 -1.11 16 6 C 0.12 1.55 7.16 -79.42 -0.57 0.98 16 7 N -0.27 -4.33 12.12 35.30 0.43 -3.90 16 8 O -0.16 -2.71 11.83 -30.28 -0.36 -3.07 16 9 C 0.03 0.40 4.23 -26.95 -0.11 0.28 16 10 H 0.14 1.28 8.14 -51.93 -0.42 0.85 16 11 C 0.48 8.64 7.12 -10.98 -0.08 8.56 16 12 O -0.51 -11.86 13.74 -13.33 -0.18 -12.05 16 13 N -0.62 -10.66 5.42 -9.99 -0.05 -10.71 16 14 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 15 C -0.03 -0.86 10.85 -17.04 -0.18 -1.04 16 16 N -0.26 -7.66 10.40 30.80 0.32 -7.34 16 17 N -0.14 -3.87 3.74 -11.41 -0.04 -3.91 16 18 C -0.32 -8.53 10.25 -14.81 -0.15 -8.68 16 19 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 20 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 21 N -0.77 -21.64 11.81 55.49 0.66 -20.98 16 22 Si 0.94 18.87 29.55 -169.99 -5.02 13.85 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 26 C -0.08 -1.94 11.49 -16.39 -0.19 -2.13 16 27 C -0.14 -1.38 5.81 -26.47 -0.15 -1.53 16 28 C -0.08 -0.74 9.61 -39.17 -0.38 -1.11 16 29 C -0.12 -1.00 9.68 -39.64 -0.38 -1.38 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.49 7.84 -52.49 -0.41 1.08 16 35 H 0.40 4.88 8.83 -40.82 -0.36 4.52 16 36 H 0.17 4.75 5.92 -52.49 -0.31 4.43 16 37 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.15 2.76 8.06 -52.49 -0.42 2.33 16 39 H 0.11 0.97 7.68 -51.93 -0.40 0.58 16 40 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.13 0.88 7.36 -52.49 -0.39 0.50 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -37.33 368.18 -8.01 -45.34 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -4.79 Total: 9.46 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -4.51 Total: -12.23 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 1.31 Total: -46.85 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.54 Total: -15.11 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.33 -8.01 -45.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900438939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.033 kcal (2) G-P(sol) polarization free energy of solvation -37.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds