Wall clock time and date at job start Tue Mar 31 2020 23:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38362 * 119.84856 * 2 1 4 4 C 1.37956 * 120.14721 * 180.02562 * 3 2 1 5 5 C 1.39612 * 119.84818 * 0.26447 * 4 3 2 6 6 C 1.47644 * 120.14441 * 179.72317 * 5 4 3 7 7 N 1.29076 * 125.86770 * 0.02562 * 6 5 4 8 8 O 1.41397 * 112.87338 * 179.64382 * 7 6 5 9 9 C 1.44202 * 107.59374 * 17.50288 * 8 7 6 10 10 H 1.09001 * 110.97433 * 92.74125 * 9 8 7 11 11 C 1.50706 * 110.97235 * 216.47956 * 9 8 7 12 12 O 1.21297 * 119.99743 * 3.54857 * 11 9 8 13 13 N 1.34773 * 119.99654 * 183.54431 * 11 9 8 14 14 C 1.40595 * 119.99541 * 179.97438 * 13 11 9 15 15 C 1.40648 * 126.08242 * 0.02562 * 14 13 11 16 16 N 1.30909 * 108.38733 * 179.97438 * 15 14 13 17 17 N 1.40070 * 108.40672 * 0.02562 * 16 15 14 18 18 C 1.37332 * 126.06773 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99336 * 179.97438 * 18 17 16 20 20 C 1.38983 * 120.00343 * 359.96833 * 18 17 16 21 21 N 1.31292 * 119.99590 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00220 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47162 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47600 * 120.00182 * 22 20 18 25 25 H 1.48507 * 109.47285 * 240.00139 * 22 20 18 26 26 C 1.35685 * 126.08226 * 179.71911 * 14 13 11 27 27 C 1.51694 * 125.86175 * 179.71609 * 6 5 4 28 28 C 1.39609 * 119.70304 * 359.51052 * 5 4 3 29 29 C 1.37954 * 119.84960 * 0.46424 * 28 5 4 30 30 H 1.09000 * 109.47418 * 89.99634 * 1 2 3 31 31 H 1.08997 * 109.47142 * 209.99445 * 1 2 3 32 32 H 1.09004 * 109.47118 * 329.99830 * 1 2 3 33 33 H 1.07994 * 119.92176 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.07114 * 179.97438 * 4 3 2 35 35 H 0.96996 * 120.00459 * 359.97438 * 13 11 9 36 36 H 1.07994 * 125.81112 * 0.02562 * 15 14 13 37 37 H 0.97011 * 120.00075 * 179.97438 * 21 20 18 38 38 H 1.07994 * 126.24445 * 359.97059 * 26 14 13 39 39 H 1.08998 * 110.78971 * 282.90591 * 27 6 5 40 40 H 1.08997 * 110.79534 * 46.37211 * 27 6 5 41 41 H 1.07997 * 120.07758 * 180.23213 * 28 5 4 42 42 H 1.08003 * 119.93019 * 179.76941 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2001 0.0000 4 6 3.5752 1.2073 -0.0005 5 6 4.2763 0.0000 -0.0067 6 6 5.7527 0.0001 -0.0134 7 7 6.5090 1.0461 -0.0139 8 8 7.8867 0.7283 -0.0131 9 6 8.0169 -0.6474 -0.4253 10 1 8.1697 -0.7192 -1.5022 11 6 9.1330 -1.3311 0.3218 12 8 9.7363 -0.7352 1.1891 13 7 9.4605 -2.6046 0.0264 14 6 10.5020 -3.2423 0.7231 15 6 11.2824 -2.6755 1.7467 16 7 12.1475 -3.5712 2.1505 17 7 11.9551 -4.7403 1.4033 18 6 12.6675 -5.9074 1.5303 19 1 12.4349 -6.7533 0.9002 20 6 13.6880 -6.0001 2.4693 21 7 13.9704 -4.9720 3.2353 22 14 14.6575 -7.5874 2.6414 23 1 14.1467 -8.5873 1.6697 24 1 16.0934 -7.3223 2.3709 25 1 14.5029 -8.1148 4.0210 26 6 10.9292 -4.5158 0.5315 27 6 6.6415 -1.2292 -0.0144 28 6 3.5752 -1.2072 -0.0019 29 6 2.1956 -1.2000 -0.0008 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5139 33 1 1.6519 2.1332 0.0004 34 1 4.1115 2.1447 -0.0010 35 1 8.9777 -3.0813 -0.6668 36 1 11.1841 -1.6724 2.1344 37 1 14.6824 -5.0367 3.8911 38 1 10.5315 -5.2222 -0.1820 39 1 6.6883 -1.6736 0.9798 40 1 6.2951 -1.9566 -0.7485 41 1 4.1114 -2.1446 -0.0028 42 1 1.6519 -2.1332 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900438940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:40 Heat of formation + Delta-G solvation = 98.266112 kcal Electronic energy + Delta-G solvation = -27245.242260 eV Core-core repulsion = 23194.476622 eV Total energy + Delta-G solvation = -4050.765639 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.81702 -39.86331 -39.38472 -38.17186 -34.54920 -34.23259 -33.25664 -31.90080 -31.67312 -30.99895 -30.20203 -27.81330 -27.42843 -25.35645 -24.29835 -22.78448 -22.66554 -21.18139 -20.54956 -20.03513 -19.48064 -17.78949 -17.37830 -17.06564 -16.10211 -15.84082 -15.59007 -15.49326 -15.20098 -15.04537 -14.58439 -14.33990 -14.17954 -13.89583 -13.82154 -13.49011 -13.32217 -13.08641 -12.98510 -12.88393 -12.69141 -12.37441 -11.94541 -11.76918 -11.70835 -11.53362 -11.47190 -11.29805 -10.97373 -10.90593 -10.53035 -10.26193 -10.18481 -9.38797 -9.23219 -9.21946 -8.84784 -8.71320 -8.10102 -6.77202 -6.58710 -4.26682 0.33687 0.98670 1.90978 2.51090 2.73489 2.97311 3.03443 3.09458 3.38532 3.43958 3.62145 3.73244 3.84498 4.17276 4.26626 4.37846 4.41437 4.45569 4.56993 4.60025 4.74686 4.89574 4.95395 4.99236 5.02312 5.13233 5.15570 5.23105 5.31395 5.36431 5.47082 5.60947 5.65915 5.99518 6.02645 6.14166 6.19175 6.38974 6.49558 6.81512 6.90777 7.01492 7.14226 7.19259 7.82109 8.06703 8.21625 8.55602 8.74521 9.33762 9.62763 10.37237 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023696 B = 0.001880 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.374582 B =14893.474549 C =15693.161814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.068 4.068 3 C -0.124 4.124 4 C -0.075 4.075 5 C -0.046 4.046 6 C 0.123 3.877 7 N -0.282 5.282 8 O -0.159 6.159 9 C 0.031 3.969 10 H 0.111 0.889 11 C 0.502 3.498 12 O -0.509 6.509 13 N -0.616 5.616 14 C -0.063 4.063 15 C -0.031 4.031 16 N -0.260 5.260 17 N -0.141 5.141 18 C -0.323 4.323 19 H 0.117 0.883 20 C 0.046 3.954 21 N -0.768 5.768 22 Si 0.935 3.065 23 H -0.263 1.263 24 H -0.273 1.273 25 H -0.274 1.274 26 C -0.082 4.082 27 C -0.138 4.138 28 C -0.081 4.081 29 C -0.124 4.124 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.397 0.603 36 H 0.176 0.824 37 H 0.275 0.725 38 H 0.146 0.854 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.132 0.868 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.003 4.394 -9.633 27.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.069 4.069 3 C -0.142 4.142 4 C -0.095 4.095 5 C -0.047 4.047 6 C -0.066 4.066 7 N -0.021 5.021 8 O -0.179 6.179 9 C -0.031 4.031 10 H 0.129 0.871 11 C 0.285 3.715 12 O -0.383 6.383 13 N -0.260 5.260 14 C -0.168 4.168 15 C -0.207 4.207 16 N -0.091 5.091 17 N 0.091 4.909 18 C -0.455 4.455 19 H 0.135 0.865 20 C -0.172 4.172 21 N -0.395 5.395 22 Si 0.759 3.241 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.233 4.233 27 C -0.178 4.178 28 C -0.101 4.101 29 C -0.141 4.141 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.230 0.770 36 H 0.192 0.808 37 H 0.086 0.914 38 H 0.164 0.836 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.150 0.850 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.146 5.910 -7.944 25.175 hybrid contribution -0.369 -1.723 -1.007 2.030 sum -23.515 4.187 -8.951 25.507 Atomic orbital electron populations 1.20862 0.90869 1.03159 1.02638 1.20149 0.96417 0.93164 0.97202 1.21015 0.93730 0.97925 1.01563 1.21362 0.94184 0.97603 0.96304 1.17775 0.87058 0.94439 1.05413 1.24217 0.94142 0.92675 0.95601 1.78429 0.89348 1.22034 1.12270 1.91406 1.14559 1.24591 1.87319 1.23534 0.94564 0.84697 1.00339 0.87128 1.19658 0.84935 0.82107 0.84845 1.90665 1.52105 1.64144 1.31424 1.42318 1.34062 1.11896 1.37734 1.17224 1.00135 0.93885 1.05590 1.24127 0.97039 1.00771 0.98742 1.78282 1.22186 0.91044 1.17547 1.44581 1.17914 1.09144 1.19226 1.19933 1.14740 0.88900 1.21963 0.86504 1.25657 0.97225 0.99105 0.95182 1.70228 1.25065 1.28606 1.15568 0.85755 0.79300 0.80120 0.78918 1.18676 1.19875 1.19895 1.21228 1.00230 0.96948 1.04873 1.23011 0.90440 0.98370 1.05973 1.21251 0.94318 0.96986 0.97545 1.20980 0.93679 0.97920 1.01569 0.90790 0.91215 0.91262 0.85373 0.84858 0.76956 0.80758 0.91436 0.83611 0.86971 0.86952 0.85023 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 10.00 36.01 0.36 -0.12 16 2 C -0.07 -0.44 5.89 -104.53 -0.62 -1.06 16 3 C -0.12 -0.89 9.68 -39.64 -0.38 -1.27 16 4 C -0.07 -0.67 9.69 -39.17 -0.38 -1.05 16 5 C -0.05 -0.43 5.87 -105.03 -0.62 -1.05 16 6 C 0.12 1.41 7.15 -79.42 -0.57 0.84 16 7 N -0.28 -4.11 12.12 35.30 0.43 -3.69 16 8 O -0.16 -2.71 11.82 -30.21 -0.36 -3.06 16 9 C 0.03 0.42 4.25 -26.88 -0.11 0.31 16 10 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 11 C 0.50 8.92 7.10 -10.98 -0.08 8.84 16 12 O -0.51 -11.63 13.74 -13.29 -0.18 -11.81 16 13 N -0.62 -10.46 5.47 -10.00 -0.05 -10.51 16 14 C -0.06 -1.43 6.90 -83.84 -0.58 -2.00 16 15 C -0.03 -0.83 10.85 -17.04 -0.18 -1.01 16 16 N -0.26 -7.57 10.40 30.80 0.32 -7.25 16 17 N -0.14 -3.84 3.74 -11.41 -0.04 -3.88 16 18 C -0.32 -8.46 10.25 -14.81 -0.15 -8.61 16 19 H 0.12 2.72 7.83 -52.48 -0.41 2.31 16 20 C 0.05 1.17 5.50 -17.51 -0.10 1.08 16 21 N -0.77 -21.46 11.81 55.49 0.66 -20.81 16 22 Si 0.94 18.77 29.55 -169.99 -5.02 13.75 16 23 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 26 C -0.08 -1.87 11.49 -16.39 -0.19 -2.06 16 27 C -0.14 -1.41 5.81 -26.39 -0.15 -1.56 16 28 C -0.08 -0.60 9.61 -39.17 -0.38 -0.97 16 29 C -0.12 -0.79 9.68 -39.64 -0.38 -1.18 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.13 1.21 7.84 -52.49 -0.41 0.80 16 35 H 0.40 4.83 8.83 -40.82 -0.36 4.47 16 36 H 0.18 4.66 5.92 -52.49 -0.31 4.35 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 39 H 0.11 1.22 7.91 -51.93 -0.41 0.81 16 40 H 0.11 0.70 7.95 -51.93 -0.41 0.28 16 41 H 0.13 0.72 7.37 -52.49 -0.39 0.33 16 42 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 LS Contribution 368.26 15.07 5.55 5.55 Total: -1.00 -36.38 368.26 -8.01 -44.39 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.79 Total: 8.20 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -4.51 Total: -10.87 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 1.31 Total: -46.14 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.54 Total: -14.88 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.38 -8.01 -44.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900438940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.659 kcal (2) G-P(sol) polarization free energy of solvation -36.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds