Wall clock time and date at job start Tue Mar 31 2020 23:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38362 * 119.84856 * 2 1 4 4 C 1.37956 * 120.14721 * 180.02562 * 3 2 1 5 5 C 1.39612 * 119.84818 * 0.26447 * 4 3 2 6 6 C 1.47644 * 120.14441 * 179.72317 * 5 4 3 7 7 N 1.29076 * 125.86770 * 0.02562 * 6 5 4 8 8 O 1.41397 * 112.87338 * 179.64382 * 7 6 5 9 9 C 1.44202 * 107.59374 * 17.50288 * 8 7 6 10 10 H 1.09001 * 110.97433 * 92.74125 * 9 8 7 11 11 C 1.50706 * 110.97235 * 216.47956 * 9 8 7 12 12 O 1.21297 * 119.99743 * 3.54857 * 11 9 8 13 13 N 1.34773 * 119.99654 * 183.54431 * 11 9 8 14 14 C 1.40595 * 119.99541 * 179.97438 * 13 11 9 15 15 C 1.40648 * 126.08242 * 0.02562 * 14 13 11 16 16 N 1.30909 * 108.38733 * 179.97438 * 15 14 13 17 17 N 1.40070 * 108.40672 * 0.02562 * 16 15 14 18 18 C 1.37332 * 126.06773 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99336 * 179.97438 * 18 17 16 20 20 C 1.38983 * 120.00343 * 359.96833 * 18 17 16 21 21 N 1.31292 * 119.99590 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00220 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47162 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47600 * 120.00182 * 22 20 18 25 25 H 1.48507 * 109.47285 * 240.00139 * 22 20 18 26 26 C 1.35685 * 126.08226 * 179.71911 * 14 13 11 27 27 C 1.51694 * 125.86175 * 179.71609 * 6 5 4 28 28 C 1.39609 * 119.70304 * 359.51052 * 5 4 3 29 29 C 1.37954 * 119.84960 * 0.46424 * 28 5 4 30 30 H 1.09000 * 109.47418 * 89.99634 * 1 2 3 31 31 H 1.08997 * 109.47142 * 209.99445 * 1 2 3 32 32 H 1.09004 * 109.47118 * 329.99830 * 1 2 3 33 33 H 1.07994 * 119.92176 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.07114 * 179.97438 * 4 3 2 35 35 H 0.96996 * 120.00459 * 359.97438 * 13 11 9 36 36 H 1.07994 * 125.81112 * 0.02562 * 15 14 13 37 37 H 0.97011 * 120.00075 * 179.97438 * 21 20 18 38 38 H 1.07994 * 126.24445 * 359.97059 * 26 14 13 39 39 H 1.08998 * 110.78971 * 282.90591 * 27 6 5 40 40 H 1.08997 * 110.79534 * 46.37211 * 27 6 5 41 41 H 1.07997 * 120.07758 * 180.23213 * 28 5 4 42 42 H 1.08003 * 119.93019 * 179.76941 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2001 0.0000 4 6 3.5752 1.2073 -0.0005 5 6 4.2763 0.0000 -0.0067 6 6 5.7527 0.0001 -0.0134 7 7 6.5090 1.0461 -0.0139 8 8 7.8867 0.7283 -0.0131 9 6 8.0169 -0.6474 -0.4253 10 1 8.1697 -0.7192 -1.5022 11 6 9.1330 -1.3311 0.3218 12 8 9.7363 -0.7352 1.1891 13 7 9.4605 -2.6046 0.0264 14 6 10.5020 -3.2423 0.7231 15 6 11.2824 -2.6755 1.7467 16 7 12.1475 -3.5712 2.1505 17 7 11.9551 -4.7403 1.4033 18 6 12.6675 -5.9074 1.5303 19 1 12.4349 -6.7533 0.9002 20 6 13.6880 -6.0001 2.4693 21 7 13.9704 -4.9720 3.2353 22 14 14.6575 -7.5874 2.6414 23 1 14.1467 -8.5873 1.6697 24 1 16.0934 -7.3223 2.3709 25 1 14.5029 -8.1148 4.0210 26 6 10.9292 -4.5158 0.5315 27 6 6.6415 -1.2292 -0.0144 28 6 3.5752 -1.2072 -0.0019 29 6 2.1956 -1.2000 -0.0008 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5139 33 1 1.6519 2.1332 0.0004 34 1 4.1115 2.1447 -0.0010 35 1 8.9777 -3.0813 -0.6668 36 1 11.1841 -1.6724 2.1344 37 1 14.6824 -5.0367 3.8911 38 1 10.5315 -5.2222 -0.1820 39 1 6.6883 -1.6736 0.9798 40 1 6.2951 -1.9566 -0.7485 41 1 4.1114 -2.1446 -0.0028 42 1 1.6519 -2.1332 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900438940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:39 Heat of formation + Delta-G solvation = 74.215809 kcal Electronic energy + Delta-G solvation = -27246.285160 eV Core-core repulsion = 23194.476622 eV Total energy + Delta-G solvation = -4051.808538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.02780 -41.38982 -40.26739 -39.54982 -36.04078 -35.21718 -35.04790 -32.61586 -32.60340 -32.17507 -31.72479 -29.55449 -27.96171 -27.02561 -25.62084 -23.42872 -23.29558 -22.93050 -22.01217 -21.25994 -20.86743 -19.45048 -18.54140 -18.24265 -17.43781 -16.97148 -16.84014 -16.65785 -16.22188 -16.02797 -15.86993 -15.59879 -15.25773 -15.04432 -14.81131 -14.69001 -14.40024 -14.29226 -14.12347 -13.89310 -13.49590 -13.34630 -13.13435 -12.99443 -12.94777 -12.84465 -12.75044 -12.30896 -12.12328 -12.02157 -11.93746 -11.68575 -11.23264 -11.06534 -10.84080 -10.61107 -10.12531 -9.92732 -9.40531 -8.58044 -8.47621 -6.25862 -0.34668 0.45154 1.09839 1.17611 1.37863 1.40797 1.51352 1.60023 1.82661 2.10153 2.31209 2.45610 2.78144 2.81609 2.95188 3.09014 3.29737 3.33009 3.68363 3.87070 3.96487 3.98947 4.06899 4.33423 4.41494 4.43107 4.48134 4.52630 4.58032 4.64778 4.83992 4.88519 4.90895 4.99357 5.04207 5.13061 5.27568 5.28897 5.37432 5.42577 5.42934 5.65122 5.94921 5.98476 6.17729 6.28336 6.63161 6.71919 7.26515 7.45760 7.65747 8.51964 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023696 B = 0.001880 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.374582 B =14893.474549 C =15693.161814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.065 4.065 3 C -0.133 4.133 4 C -0.089 4.089 5 C -0.073 4.073 6 C 0.145 3.855 7 N -0.322 5.322 8 O -0.209 6.209 9 C 0.036 3.964 10 H 0.148 0.852 11 C 0.502 3.498 12 O -0.567 6.567 13 N -0.599 5.599 14 C -0.047 4.047 15 C -0.062 4.062 16 N -0.312 5.312 17 N -0.167 5.167 18 C -0.352 4.352 19 H 0.146 0.854 20 C -0.009 4.009 21 N -0.826 5.826 22 Si 1.020 2.980 23 H -0.237 1.237 24 H -0.275 1.275 25 H -0.274 1.274 26 C -0.071 4.071 27 C -0.131 4.131 28 C -0.075 4.075 29 C -0.127 4.127 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.426 0.574 36 H 0.160 0.840 37 H 0.276 0.724 38 H 0.196 0.804 39 H 0.107 0.893 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.322 1.294 -12.011 30.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.066 4.066 3 C -0.150 4.150 4 C -0.109 4.109 5 C -0.075 4.075 6 C -0.044 4.044 7 N -0.065 5.065 8 O -0.226 6.226 9 C -0.026 4.026 10 H 0.165 0.835 11 C 0.287 3.713 12 O -0.445 6.445 13 N -0.246 5.246 14 C -0.153 4.153 15 C -0.237 4.237 16 N -0.144 5.144 17 N 0.064 4.936 18 C -0.483 4.483 19 H 0.163 0.837 20 C -0.220 4.220 21 N -0.455 5.455 22 Si 0.839 3.161 23 H -0.160 1.160 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.222 4.222 27 C -0.170 4.170 28 C -0.095 4.095 29 C -0.145 4.145 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.161 0.839 34 H 0.138 0.862 35 H 0.264 0.736 36 H 0.177 0.823 37 H 0.085 0.915 38 H 0.213 0.787 39 H 0.125 0.875 40 H 0.184 0.816 41 H 0.173 0.827 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -26.503 2.795 -10.383 28.601 hybrid contribution 0.363 -0.668 -0.318 0.824 sum -26.140 2.128 -10.701 28.325 Atomic orbital electron populations 1.20934 0.89011 1.04050 1.03549 1.20533 0.97852 0.92892 0.95289 1.21233 0.93064 0.99256 1.01498 1.21421 0.95158 0.97267 0.97060 1.17888 0.85886 0.95608 1.08078 1.24685 0.95053 0.92511 0.92104 1.78492 0.88269 1.23286 1.16484 1.91370 1.16736 1.26208 1.88253 1.23640 0.94183 0.83542 1.01190 0.83458 1.20556 0.85053 0.81798 0.83880 1.90652 1.54278 1.65503 1.34039 1.42146 1.32801 1.11814 1.37790 1.17274 1.00216 0.93691 1.04136 1.24113 0.98522 1.00314 1.00789 1.78183 1.23945 0.92612 1.19642 1.44887 1.19486 1.09010 1.20228 1.20711 1.15235 0.89437 1.22890 0.83717 1.26918 0.98008 1.02889 0.94197 1.70418 1.26341 1.31681 1.17015 0.84524 0.77024 0.75396 0.79186 1.15963 1.19989 1.19907 1.22029 0.98462 0.97580 1.04086 1.23112 0.88055 0.98601 1.07265 1.21539 0.94891 0.96907 0.96123 1.21354 0.93486 0.99001 1.00674 0.89716 0.90074 0.90719 0.83894 0.86196 0.73574 0.82312 0.91455 0.78727 0.87453 0.81628 0.82680 0.82612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.00 71.24 0.71 0.15 16 2 C -0.06 -0.64 5.89 -19.81 -0.12 -0.76 16 3 C -0.13 -1.68 9.68 22.23 0.22 -1.47 16 4 C -0.09 -1.55 9.69 22.53 0.22 -1.33 16 5 C -0.07 -1.27 5.87 -20.13 -0.12 -1.38 16 6 C 0.15 3.15 7.15 45.77 0.33 3.48 16 7 N -0.32 -9.61 12.12 -42.23 -0.51 -10.12 16 8 O -0.21 -7.33 11.82 -20.32 -0.24 -7.57 16 9 C 0.04 0.93 4.25 30.50 0.13 1.06 16 10 H 0.15 2.64 8.14 -2.39 -0.02 2.62 16 11 C 0.50 17.72 7.10 87.66 0.62 18.34 16 12 O -0.57 -27.17 13.74 14.93 0.21 -26.97 16 13 N -0.60 -19.21 5.47 -303.93 -1.66 -20.87 16 14 C -0.05 -2.11 6.90 37.73 0.26 -1.85 16 15 C -0.06 -3.45 10.85 85.42 0.93 -2.53 16 16 N -0.31 -19.00 10.40 -56.47 -0.59 -19.59 16 17 N -0.17 -9.16 3.74 -190.01 -0.71 -9.87 16 18 C -0.35 -18.28 10.25 84.01 0.86 -17.42 16 19 H 0.15 6.40 7.83 -2.91 -0.02 6.38 16 20 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 21 N -0.83 -48.08 11.81 21.66 0.26 -47.82 16 22 Si 1.02 38.23 29.55 68.60 2.03 40.25 16 23 H -0.24 -7.80 7.11 99.48 0.71 -7.10 16 24 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 25 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 26 C -0.07 -3.14 11.49 83.38 0.96 -2.18 16 27 C -0.13 -2.31 5.81 30.81 0.18 -2.13 16 28 C -0.07 -0.85 9.61 22.53 0.22 -0.63 16 29 C -0.13 -1.16 9.68 22.23 0.22 -0.95 16 30 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.08 0.23 8.08 -2.39 -0.02 0.21 16 32 H 0.07 0.30 8.08 -2.39 -0.02 0.28 16 33 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 34 H 0.12 2.31 7.84 -2.91 -0.02 2.29 16 35 H 0.43 8.65 8.83 -92.71 -0.82 7.83 16 36 H 0.16 9.18 5.92 -2.91 -0.02 9.16 16 37 H 0.28 14.75 8.31 -92.70 -0.77 13.98 16 38 H 0.20 6.43 8.06 -2.91 -0.02 6.41 16 39 H 0.11 2.09 7.91 -2.39 -0.02 2.08 16 40 H 0.17 1.13 7.95 -2.39 -0.02 1.11 16 41 H 0.16 0.95 7.37 -2.91 -0.02 0.92 16 42 H 0.16 0.60 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -87.97 368.26 5.12 -82.85 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.26 Total: 29.29 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 6.07 Total: -9.59 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -3.21 Total: -108.27 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.04 Total: -34.54 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.25 kcal Total: -87.97 5.12 -82.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900438940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.069 kcal (2) G-P(sol) polarization free energy of solvation -87.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds