Wall clock time and date at job start Tue Mar 31 2020 22:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 119.99681 * 2 1 4 4 H 1.48491 * 109.47160 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46871 * 119.99895 * 3 2 1 6 6 H 1.48500 * 109.47284 * 239.99741 * 3 2 1 7 7 C 1.38659 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00056 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99510 * 0.02562 * 7 2 1 10 10 C 1.35747 * 116.99336 * 174.94088 * 9 7 2 11 11 C 1.38884 * 120.06573 * 185.26153 * 10 9 7 12 12 C 1.38102 * 119.93124 * 179.76659 * 11 10 9 13 13 C 1.38304 * 120.06818 * 0.48212 * 12 11 10 14 14 C 1.50694 * 119.93110 * 179.74621 * 13 12 11 15 15 N 1.46897 * 109.47352 * 270.02248 * 14 13 12 16 16 C 1.47846 * 111.00219 * 290.84468 * 15 14 13 17 17 C 1.54905 * 104.79958 * 213.63514 * 16 15 14 18 18 C 1.55149 * 101.65154 * 37.06762 * 17 16 15 19 19 H 1.08997 * 110.85547 * 82.79843 * 18 17 16 20 20 C 1.52995 * 110.70240 * 205.96617 * 18 17 16 21 21 S 1.81403 * 109.47470 * 288.59693 * 20 18 17 22 22 N 1.65596 * 104.45213 * 180.02562 * 21 20 18 23 23 O 1.42104 * 110.54095 * 291.63029 * 21 20 18 24 24 O 1.42102 * 110.54050 * 68.37506 * 21 20 18 25 25 C 1.47443 * 111.00266 * 169.99895 * 15 14 13 26 26 C 1.38299 * 120.13561 * 359.76985 * 13 12 11 27 27 C 1.38095 * 120.07276 * 359.97438 * 26 13 12 28 28 H 0.97006 * 119.99673 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.03547 * 359.97438 * 11 10 9 30 30 H 1.07994 * 119.96787 * 180.23478 * 12 11 10 31 31 H 1.09004 * 109.47559 * 30.02712 * 14 13 12 32 32 H 1.09003 * 109.47375 * 150.01960 * 14 13 12 33 33 H 1.09005 * 110.37151 * 332.46303 * 16 15 14 34 34 H 1.08998 * 110.37228 * 94.79916 * 16 15 14 35 35 H 1.08998 * 110.99057 * 278.98027 * 17 16 15 36 36 H 1.08993 * 111.02593 * 155.17113 * 17 16 15 37 37 H 1.08994 * 109.47407 * 48.60063 * 20 18 17 38 38 H 1.09004 * 109.47201 * 168.59921 * 20 18 17 39 39 H 0.96994 * 119.99716 * 0.02562 * 22 21 20 40 40 H 0.97000 * 119.99939 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.89019 * 242.66295 * 25 15 14 42 42 H 1.09002 * 109.88670 * 3.69307 * 25 15 14 43 43 H 1.08003 * 119.96363 * 179.97438 * 26 13 12 44 44 H 1.08001 * 120.03823 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 1.2845 2.7464 0.0006 5 1 3.1032 1.6965 1.2126 6 1 3.1033 1.6965 -1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0702 -3.5045 -0.1056 11 6 1.4368 -4.7350 -0.2221 12 6 2.1877 -5.8886 -0.3348 13 6 3.5690 -5.8203 -0.3216 14 6 4.3854 -7.0815 -0.4390 15 7 4.6436 -7.6243 0.9014 16 6 5.5693 -6.7532 1.6565 17 6 6.3975 -7.7235 2.5352 18 6 6.5707 -8.9371 1.5843 19 1 7.4013 -8.7761 0.8970 20 6 6.7743 -10.2257 2.3835 21 16 8.4198 -10.2102 3.1471 22 7 8.5069 -11.6444 3.9703 23 8 9.4312 -10.3144 2.1543 24 8 8.4891 -9.2181 4.1621 25 6 5.2301 -8.9746 0.8208 26 6 4.2026 -4.5970 -0.2004 27 6 3.4574 -3.4393 -0.0927 28 1 -0.4850 -0.8401 0.0004 29 1 0.3583 -4.7894 -0.2280 30 1 1.6959 -6.8453 -0.4292 31 1 3.8368 -7.8159 -1.0289 32 1 5.3329 -6.8569 -0.9288 33 1 6.2216 -6.2098 0.9728 34 1 5.0103 -6.0576 2.2823 35 1 5.8457 -8.0057 3.4319 36 1 7.3631 -7.2893 2.7939 37 1 6.0137 -10.2951 3.1610 38 1 6.6914 -11.0839 1.7165 39 1 7.7572 -12.2595 3.9535 40 1 9.3078 -11.8693 4.4692 41 1 4.5597 -9.6984 1.2841 42 1 5.4018 -9.2426 -0.2217 43 1 5.2814 -4.5469 -0.1901 44 1 3.9528 -2.4843 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932955898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:58 Heat of formation + Delta-G solvation = -75.612992 kcal Electronic energy + Delta-G solvation = -26666.830118 eV Core-core repulsion = 22711.675716 eV Total energy + Delta-G solvation = -3955.154402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -39.72699 -38.87205 -37.39443 -36.74117 -36.31004 -33.96485 -33.68200 -32.26008 -30.52705 -30.24279 -29.28613 -26.77183 -25.13408 -24.31876 -22.03215 -21.37056 -20.98180 -20.37716 -19.86148 -18.37333 -18.18841 -17.75078 -16.92736 -16.51793 -16.15104 -15.77637 -15.44032 -15.15806 -14.58154 -14.29578 -14.12536 -13.97561 -13.69061 -13.59896 -13.40988 -13.02961 -12.82992 -12.59904 -12.56230 -12.50914 -12.38392 -12.33589 -11.91299 -11.58812 -11.34771 -11.19926 -11.06572 -10.98532 -10.95760 -10.92709 -10.71732 -10.56460 -10.29500 -10.26086 -9.40231 -8.77413 -8.37028 -8.22583 -7.25079 -6.77183 -4.06264 -0.22965 2.16377 2.21899 2.40055 3.17441 3.23863 3.28394 3.45247 3.74979 3.80911 3.99261 4.11782 4.17098 4.38150 4.64125 4.66965 4.82504 4.91485 5.07956 5.11590 5.15688 5.19447 5.24200 5.32502 5.42339 5.46740 5.59370 5.66391 5.71130 5.75578 5.81012 5.91020 6.00843 6.15102 6.35662 6.51204 6.62988 6.82281 6.85772 7.00229 7.10444 7.25172 7.33798 7.56388 7.73240 8.39997 8.91909 9.60992 10.66792 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023254 B = 0.001969 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.823277 B =14217.440649 C =14954.107839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.009 3.991 3 Si 1.095 2.905 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.471 4.471 8 H 0.083 0.917 9 O -0.203 6.203 10 C 0.158 3.842 11 C -0.197 4.197 12 C -0.052 4.052 13 C -0.177 4.177 14 C 0.107 3.893 15 N -0.522 5.522 16 C 0.048 3.952 17 C -0.143 4.143 18 C -0.102 4.102 19 H 0.091 0.909 20 C -0.607 4.607 21 S 2.609 3.391 22 N -1.254 6.254 23 O -0.965 6.965 24 O -0.956 6.956 25 C 0.055 3.945 26 C -0.064 4.064 27 C -0.230 4.230 28 H 0.282 0.718 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.412 0.588 40 H 0.419 0.581 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.516 -24.330 4.781 28.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.196 4.196 3 Si 0.920 3.080 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.547 4.547 8 H 0.101 0.899 9 O -0.107 6.107 10 C 0.105 3.895 11 C -0.217 4.217 12 C -0.071 4.071 13 C -0.179 4.179 14 C -0.020 4.020 15 N -0.246 5.246 16 C -0.080 4.080 17 C -0.181 4.181 18 C -0.123 4.123 19 H 0.110 0.890 20 C -0.737 4.737 21 S 2.701 3.299 22 N -0.927 5.927 23 O -0.954 6.954 24 O -0.945 6.945 25 C -0.074 4.074 26 C -0.083 4.083 27 C -0.249 4.249 28 H 0.092 0.908 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.238 0.762 40 H 0.249 0.751 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.121 0.879 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.256 -21.756 4.906 26.469 hybrid contribution 0.484 -2.468 -0.313 2.535 sum 14.740 -24.224 4.593 28.726 Atomic orbital electron populations 1.70576 1.06553 1.31626 1.42530 1.26538 0.96853 1.01136 0.95063 0.83111 0.74487 0.73362 0.77089 1.19784 1.20724 1.20756 1.22195 0.93063 0.82210 1.57274 0.89916 1.83666 1.35559 1.12262 1.79197 1.19252 0.90297 0.87407 0.92535 1.20192 0.99415 0.90427 1.11618 1.20429 0.92827 0.96482 0.97387 1.19048 0.93564 0.93105 1.12152 1.21030 0.97609 0.94775 0.88595 1.63706 1.43365 1.01091 1.16473 1.23037 0.93295 0.95468 0.96172 1.23122 1.01661 0.94844 0.98435 1.22165 1.01029 0.91578 0.97566 0.89039 1.30371 1.23734 1.06955 1.12676 1.04904 0.76701 0.73310 0.74970 1.53169 1.28020 1.40348 1.71138 1.93621 1.54443 1.85530 1.61832 1.93636 1.85961 1.58206 1.56729 1.22855 0.92422 0.92887 0.99222 1.20605 0.98049 0.91907 0.97704 1.21129 0.93737 0.98896 1.11165 0.90813 0.86768 0.87070 0.90768 0.94639 0.93155 0.89342 0.89451 0.89754 0.84123 0.84470 0.76231 0.75100 0.90070 0.92257 0.87880 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.41 13.70 55.48 0.76 -25.65 16 2 C 0.01 0.26 5.49 -17.52 -0.10 0.17 16 3 Si 1.10 23.80 29.92 -169.99 -5.09 18.71 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 7 C -0.47 -13.32 9.49 30.89 0.29 -13.03 16 8 H 0.08 2.20 5.20 -52.49 -0.27 1.93 16 9 O -0.20 -5.74 9.16 0.05 0.00 -5.74 16 10 C 0.16 3.83 6.65 -39.11 -0.26 3.58 16 11 C -0.20 -4.14 9.99 -39.39 -0.39 -4.53 16 12 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 13 C -0.18 -2.95 5.10 -104.58 -0.53 -3.48 16 14 C 0.11 1.38 4.72 -4.98 -0.02 1.36 16 15 N -0.52 -6.26 5.15 -232.69 -1.20 -7.46 16 16 C 0.05 0.57 5.61 -2.30 -0.01 0.55 16 17 C -0.14 -1.37 5.67 -24.59 -0.14 -1.51 16 18 C -0.10 -0.79 2.92 -88.79 -0.26 -1.05 16 19 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 20 C -0.61 -2.72 5.42 37.16 0.20 -2.51 16 21 S 2.61 17.57 5.82 -107.50 -0.63 16.95 16 22 N -1.25 -4.12 9.43 60.35 0.57 -3.55 16 23 O -0.97 -10.34 18.10 -57.54 -1.04 -11.38 16 24 O -0.96 -10.12 17.12 -57.54 -0.99 -11.10 16 25 C 0.06 0.48 6.46 -2.83 -0.02 0.46 16 26 C -0.06 -1.15 8.91 -39.61 -0.35 -1.51 16 27 C -0.23 -5.03 9.17 -39.40 -0.36 -5.39 16 28 H 0.28 8.64 7.97 -40.82 -0.33 8.31 16 29 H 0.11 2.30 8.06 -52.49 -0.42 1.87 16 30 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.07 0.87 7.97 -51.93 -0.41 0.45 16 32 H 0.04 0.43 7.79 -51.93 -0.40 0.03 16 33 H 0.05 0.59 6.99 -51.93 -0.36 0.23 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 0.80 7.94 -51.93 -0.41 0.39 16 36 H 0.08 0.80 7.83 -51.93 -0.41 0.39 16 37 H 0.14 0.39 8.00 -51.93 -0.42 -0.03 16 38 H 0.14 0.25 8.14 -51.92 -0.42 -0.17 16 39 H 0.41 0.07 8.83 -34.46 -0.30 -0.23 16 40 H 0.42 1.15 8.96 -34.47 -0.31 0.84 16 41 H 0.08 0.63 7.82 -51.93 -0.41 0.22 16 42 H 0.06 0.47 7.55 -51.93 -0.39 0.07 16 43 H 0.10 1.61 7.48 -52.48 -0.39 1.22 16 44 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 LS Contribution 371.53 15.07 5.60 5.60 Total: -1.00 -37.34 371.53 -10.37 -47.71 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.02 Total: 4.13 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: -2.34 Total: -28.21 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.13 Total: -36.66 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -2.03 Total: -28.23 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -5.09 Total: 18.71 kcal Atomic # 16 Polarization: 17.57 SS G_CDS: -0.63 Total: 16.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.34 -10.37 -47.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932955898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.902 kcal (2) G-P(sol) polarization free energy of solvation -37.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds