Wall clock time and date at job start Tue Mar 31 2020 22:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 119.99681 * 2 1 4 4 H 1.48491 * 109.47160 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46871 * 119.99895 * 3 2 1 6 6 H 1.48500 * 109.47284 * 239.99741 * 3 2 1 7 7 C 1.38659 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00056 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99510 * 0.02562 * 7 2 1 10 10 C 1.35747 * 116.99336 * 174.94088 * 9 7 2 11 11 C 1.38884 * 120.06573 * 185.26153 * 10 9 7 12 12 C 1.38102 * 119.93124 * 179.76659 * 11 10 9 13 13 C 1.38304 * 120.06818 * 0.48212 * 12 11 10 14 14 C 1.50694 * 119.93110 * 179.74621 * 13 12 11 15 15 N 1.46897 * 109.47352 * 270.02248 * 14 13 12 16 16 C 1.47846 * 111.00219 * 290.84468 * 15 14 13 17 17 C 1.54905 * 104.79958 * 213.63514 * 16 15 14 18 18 C 1.55149 * 101.65154 * 37.06762 * 17 16 15 19 19 H 1.08997 * 110.85547 * 82.79843 * 18 17 16 20 20 C 1.52995 * 110.70240 * 205.96617 * 18 17 16 21 21 S 1.81403 * 109.47470 * 288.59693 * 20 18 17 22 22 N 1.65596 * 104.45213 * 180.02562 * 21 20 18 23 23 O 1.42104 * 110.54095 * 291.63029 * 21 20 18 24 24 O 1.42102 * 110.54050 * 68.37506 * 21 20 18 25 25 C 1.47443 * 111.00266 * 169.99895 * 15 14 13 26 26 C 1.38299 * 120.13561 * 359.76985 * 13 12 11 27 27 C 1.38095 * 120.07276 * 359.97438 * 26 13 12 28 28 H 0.97006 * 119.99673 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.03547 * 359.97438 * 11 10 9 30 30 H 1.07994 * 119.96787 * 180.23478 * 12 11 10 31 31 H 1.09004 * 109.47559 * 30.02712 * 14 13 12 32 32 H 1.09003 * 109.47375 * 150.01960 * 14 13 12 33 33 H 1.09005 * 110.37151 * 332.46303 * 16 15 14 34 34 H 1.08998 * 110.37228 * 94.79916 * 16 15 14 35 35 H 1.08998 * 110.99057 * 278.98027 * 17 16 15 36 36 H 1.08993 * 111.02593 * 155.17113 * 17 16 15 37 37 H 1.08994 * 109.47407 * 48.60063 * 20 18 17 38 38 H 1.09004 * 109.47201 * 168.59921 * 20 18 17 39 39 H 0.96994 * 119.99716 * 0.02562 * 22 21 20 40 40 H 0.97000 * 119.99939 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.89019 * 242.66295 * 25 15 14 42 42 H 1.09002 * 109.88670 * 3.69307 * 25 15 14 43 43 H 1.08003 * 119.96363 * 179.97438 * 26 13 12 44 44 H 1.08001 * 120.03823 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 1.2845 2.7464 0.0006 5 1 3.1032 1.6965 1.2126 6 1 3.1033 1.6965 -1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0702 -3.5045 -0.1056 11 6 1.4368 -4.7350 -0.2221 12 6 2.1877 -5.8886 -0.3348 13 6 3.5690 -5.8203 -0.3216 14 6 4.3854 -7.0815 -0.4390 15 7 4.6436 -7.6243 0.9014 16 6 5.5693 -6.7532 1.6565 17 6 6.3975 -7.7235 2.5352 18 6 6.5707 -8.9371 1.5843 19 1 7.4013 -8.7761 0.8970 20 6 6.7743 -10.2257 2.3835 21 16 8.4198 -10.2102 3.1471 22 7 8.5069 -11.6444 3.9703 23 8 9.4312 -10.3144 2.1543 24 8 8.4891 -9.2181 4.1621 25 6 5.2301 -8.9746 0.8208 26 6 4.2026 -4.5970 -0.2004 27 6 3.4574 -3.4393 -0.0927 28 1 -0.4850 -0.8401 0.0004 29 1 0.3583 -4.7894 -0.2280 30 1 1.6959 -6.8453 -0.4292 31 1 3.8368 -7.8159 -1.0289 32 1 5.3329 -6.8569 -0.9288 33 1 6.2216 -6.2098 0.9728 34 1 5.0103 -6.0576 2.2823 35 1 5.8457 -8.0057 3.4319 36 1 7.3631 -7.2893 2.7939 37 1 6.0137 -10.2951 3.1610 38 1 6.6914 -11.0839 1.7165 39 1 7.7572 -12.2595 3.9535 40 1 9.3078 -11.8693 4.4692 41 1 4.5597 -9.6984 1.2841 42 1 5.4018 -9.2426 -0.2217 43 1 5.2814 -4.5469 -0.1901 44 1 3.9528 -2.4843 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932955898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:57 Heat of formation + Delta-G solvation = -106.645190 kcal Electronic energy + Delta-G solvation = -26668.175775 eV Core-core repulsion = 22711.675716 eV Total energy + Delta-G solvation = -3956.500059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.02983 -40.17808 -38.36166 -38.03258 -36.95305 -34.96844 -34.16400 -34.00960 -31.87525 -31.55178 -30.36532 -27.71662 -26.88649 -25.56391 -23.64452 -22.57016 -21.81259 -21.49918 -20.35031 -20.23628 -18.73732 -18.62004 -18.21345 -17.26246 -17.02120 -16.81038 -16.55602 -16.20276 -15.75419 -15.65140 -15.58568 -15.31520 -15.07220 -14.91613 -14.62990 -14.27715 -13.77091 -13.68004 -13.38515 -13.16731 -13.11573 -13.01113 -12.93366 -12.88833 -12.61112 -12.49817 -12.25394 -12.15363 -12.09660 -11.94557 -11.89645 -11.72756 -11.37480 -11.25606 -11.24635 -10.75836 -9.83146 -9.28829 -8.97906 -8.92951 -6.24683 -0.71312 0.54229 0.62081 1.47545 1.59924 1.77706 1.99134 2.35108 2.69320 2.75547 3.04069 3.22468 3.33155 3.35905 3.39382 3.56903 3.77457 3.97774 4.00307 4.11769 4.15398 4.23944 4.36559 4.41039 4.46420 4.55861 4.65359 4.69125 4.73281 4.79124 4.91117 4.98588 5.01094 5.08997 5.21980 5.22925 5.24425 5.29991 5.52745 5.71024 5.74611 6.03980 6.04737 6.15258 6.30416 6.38756 6.86076 7.62773 8.50073 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023254 B = 0.001969 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.823277 B =14217.440649 C =14954.107839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.046 4.046 3 Si 1.145 2.855 4 H -0.273 1.273 5 H -0.261 1.261 6 H -0.260 1.260 7 C -0.486 4.486 8 H 0.089 0.911 9 O -0.254 6.254 10 C 0.114 3.886 11 C -0.205 4.205 12 C -0.047 4.047 13 C -0.148 4.148 14 C 0.107 3.893 15 N -0.535 5.535 16 C 0.042 3.958 17 C -0.145 4.145 18 C -0.104 4.104 19 H 0.093 0.907 20 C -0.587 4.587 21 S 2.615 3.385 22 N -1.241 6.241 23 O -1.011 7.011 24 O -1.003 7.003 25 C 0.055 3.945 26 C -0.063 4.063 27 C -0.241 4.241 28 H 0.260 0.740 29 H 0.114 0.886 30 H 0.150 0.850 31 H 0.099 0.901 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.166 0.834 38 H 0.176 0.824 39 H 0.428 0.572 40 H 0.423 0.577 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.132 0.868 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.322 -28.140 4.383 32.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.242 4.242 3 Si 0.960 3.040 4 H -0.197 1.197 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.107 0.893 9 O -0.161 6.161 10 C 0.064 3.936 11 C -0.225 4.225 12 C -0.065 4.065 13 C -0.149 4.149 14 C -0.020 4.020 15 N -0.259 5.259 16 C -0.085 4.085 17 C -0.183 4.183 18 C -0.125 4.125 19 H 0.112 0.888 20 C -0.720 4.720 21 S 2.710 3.290 22 N -0.918 5.918 23 O -1.000 7.000 24 O -0.992 6.992 25 C -0.074 4.074 26 C -0.081 4.081 27 C -0.261 4.261 28 H 0.068 0.932 29 H 0.132 0.868 30 H 0.168 0.832 31 H 0.117 0.883 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.184 0.816 38 H 0.193 0.807 39 H 0.258 0.742 40 H 0.254 0.746 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.150 0.850 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 16.121 -25.655 4.525 30.636 hybrid contribution 0.040 -1.725 -0.193 1.736 sum 16.162 -27.380 4.333 32.088 Atomic orbital electron populations 1.70713 1.07700 1.30009 1.46758 1.28384 0.96949 1.04895 0.93964 0.82591 0.73773 0.68897 0.78718 1.19745 1.18554 1.18492 1.22554 0.93572 0.82983 1.57123 0.89317 1.83643 1.36820 1.13181 1.82501 1.19839 0.91551 0.87438 0.94723 1.20493 0.99987 0.90542 1.11444 1.20872 0.93305 0.96691 0.95625 1.19634 0.93719 0.94471 1.07112 1.21088 0.97845 0.93210 0.89846 1.63604 1.44285 1.02554 1.15505 1.23003 0.93340 0.95826 0.96368 1.23113 1.00990 0.95458 0.98699 1.22170 1.00956 0.92026 0.97374 0.88826 1.30206 1.21390 1.06851 1.13549 1.04358 0.77258 0.73180 0.74175 1.52789 1.28948 1.39563 1.70508 1.93571 1.57306 1.86183 1.62940 1.93587 1.87081 1.60343 1.58207 1.22973 0.92769 0.90956 1.00671 1.20926 0.99389 0.91214 0.96598 1.21219 0.93154 0.99951 1.11743 0.93197 0.86826 0.83218 0.88271 0.93272 0.93216 0.91900 0.89115 0.90327 0.81572 0.80662 0.74217 0.74634 0.88216 0.90519 0.85026 0.86884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.24 13.70 21.61 0.30 -57.94 16 2 C -0.05 -2.69 5.49 84.84 0.47 -2.22 16 3 Si 1.14 49.02 29.92 68.60 2.05 51.08 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.49 -29.03 9.49 67.92 0.64 -28.39 16 8 H 0.09 4.96 5.20 -2.91 -0.02 4.94 16 9 O -0.25 -15.37 9.16 -22.72 -0.21 -15.58 16 10 C 0.11 5.76 6.65 22.58 0.15 5.91 16 11 C -0.21 -8.69 9.99 22.39 0.22 -8.47 16 12 C -0.05 -1.52 9.69 22.25 0.22 -1.31 16 13 C -0.15 -4.46 5.10 -19.84 -0.10 -4.56 16 14 C 0.11 2.25 4.72 85.56 0.40 2.65 16 15 N -0.54 -10.55 5.15 -890.10 -4.59 -15.13 16 16 C 0.04 0.91 5.61 86.77 0.49 1.39 16 17 C -0.14 -2.44 5.67 31.98 0.18 -2.26 16 18 C -0.10 -1.18 2.92 -9.61 -0.03 -1.21 16 19 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 20 C -0.59 -2.51 5.42 71.98 0.39 -2.12 16 21 S 2.61 29.69 5.82 -56.49 -0.33 29.36 16 22 N -1.24 -4.92 9.43 37.02 0.35 -4.57 16 23 O -1.01 -20.30 18.10 -127.65 -2.31 -22.61 16 24 O -1.00 -20.35 17.12 -127.65 -2.19 -22.53 16 25 C 0.05 0.66 6.46 86.65 0.56 1.22 16 26 C -0.06 -2.17 8.91 22.25 0.20 -1.97 16 27 C -0.24 -10.77 9.17 22.39 0.21 -10.57 16 28 H 0.26 17.18 7.97 -92.70 -0.74 16.44 16 29 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 30 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 31 H 0.10 1.68 7.97 -2.39 -0.02 1.66 16 32 H 0.05 0.95 7.79 -2.39 -0.02 0.93 16 33 H 0.05 1.05 6.99 -2.38 -0.02 1.03 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.45 7.94 -2.39 -0.02 1.43 16 36 H 0.08 1.41 7.83 -2.39 -0.02 1.39 16 37 H 0.17 -0.01 8.00 -2.39 -0.02 -0.03 16 38 H 0.18 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.43 -1.40 8.83 -96.76 -0.85 -2.26 16 40 H 0.42 1.51 8.96 -96.75 -0.87 0.64 16 41 H 0.10 0.89 7.82 -2.39 -0.02 0.87 16 42 H 0.08 0.72 7.55 -2.39 -0.02 0.70 16 43 H 0.13 3.78 7.48 -2.91 -0.02 3.76 16 44 H 0.11 5.25 5.64 -2.91 -0.02 5.23 16 Total: -1.00 -88.59 371.53 -3.57 -92.16 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.65 Total: 17.67 kcal Atomic # 6 Polarization: -55.90 SS G_CDS: 4.00 Total: -51.91 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -3.94 Total: -77.64 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -4.71 Total: -60.72 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.05 Total: 51.08 kcal Atomic # 16 Polarization: 29.69 SS G_CDS: -0.33 Total: 29.36 kcal Total: -88.59 -3.57 -92.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932955898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.482 kcal (2) G-P(sol) polarization free energy of solvation -88.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds