Wall clock time and date at job start Tue Mar 31 2020 22:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86805 * 120.00060 * 2 1 4 4 H 1.48500 * 109.47105 * 240.00272 * 3 2 1 5 5 H 1.48503 * 109.46833 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47094 * 120.00047 * 3 2 1 7 7 C 1.38659 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99723 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99512 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99552 * 185.05867 * 9 7 2 11 11 C 1.38879 * 120.06956 * 354.46721 * 10 9 7 12 12 C 1.38095 * 119.93178 * 180.02562 * 11 10 9 13 13 C 1.38309 * 120.06871 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.93053 * 179.97438 * 13 12 11 15 15 N 1.46901 * 109.46740 * 90.00500 * 14 13 12 16 16 C 1.47843 * 111.00322 * 69.15537 * 15 14 13 17 17 C 1.54911 * 104.79670 * 146.36401 * 16 15 14 18 18 C 1.55402 * 101.73991 * 323.01810 * 17 16 15 19 19 H 1.08994 * 110.67812 * 277.17828 * 18 17 16 20 20 C 1.53000 * 110.84263 * 153.86221 * 18 17 16 21 21 S 1.81402 * 109.47204 * 71.46476 * 20 18 17 22 22 N 1.65596 * 104.45164 * 179.97438 * 21 20 18 23 23 O 1.42100 * 110.54266 * 291.62589 * 21 20 18 24 24 O 1.42109 * 110.54123 * 68.37373 * 21 20 18 25 25 C 1.47449 * 111.00065 * 190.00145 * 15 14 13 26 26 C 1.38297 * 120.13463 * 0.25080 * 13 12 11 27 27 C 1.38104 * 120.07320 * 359.45602 * 26 13 12 28 28 H 0.96999 * 119.99575 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.03563 * 0.04922 * 11 10 9 30 30 H 1.08001 * 119.96847 * 180.02562 * 12 11 10 31 31 H 1.09001 * 109.47351 * 330.00417 * 14 13 12 32 32 H 1.08996 * 109.46888 * 209.99852 * 14 13 12 33 33 H 1.08999 * 110.37006 * 265.19238 * 16 15 14 34 34 H 1.08994 * 110.37471 * 27.53375 * 16 15 14 35 35 H 1.08993 * 110.98831 * 81.02167 * 17 16 15 36 36 H 1.08997 * 110.99032 * 204.83736 * 17 16 15 37 37 H 1.08997 * 109.46881 * 191.46569 * 20 18 17 38 38 H 1.09001 * 109.47265 * 311.46388 * 20 18 17 39 39 H 0.96995 * 120.00491 * 150.00273 * 22 21 20 40 40 H 0.97006 * 120.00059 * 330.00081 * 22 21 20 41 41 H 1.09002 * 109.88202 * 356.14121 * 25 15 14 42 42 H 1.08995 * 109.89401 * 117.17018 * 25 15 14 43 43 H 1.08003 * 119.96502 * 179.69993 * 26 13 12 44 44 H 1.07999 * 120.03448 * 180.27700 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2124 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4572 -3.4395 0.0922 12 6 4.2024 -4.5971 0.1998 13 6 3.5687 -5.8205 0.3203 14 6 4.3850 -7.0819 0.4369 15 7 4.6572 -7.3597 1.8535 16 6 3.4212 -7.7517 2.5637 17 6 3.8847 -8.7777 3.6277 18 6 4.9976 -9.5462 2.8622 19 1 4.5651 -10.3240 2.2329 20 6 6.0171 -10.1406 3.8359 21 16 5.2633 -11.5286 4.7281 22 7 6.4607 -12.0722 5.7344 23 8 4.2492 -11.0637 5.6083 24 8 5.0256 -12.6177 3.8467 25 6 5.6461 -8.4436 1.9989 26 6 2.1875 -5.8892 0.3282 27 6 1.4366 -4.7345 0.2270 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4844 -0.0019 30 1 5.2812 -4.5471 0.1899 31 1 5.3273 -6.9555 -0.0962 32 1 3.8311 -7.9145 0.0034 33 1 2.9686 -6.8845 3.0446 34 1 2.7167 -8.2139 1.8723 35 1 4.2928 -8.2741 4.5039 36 1 3.0698 -9.4454 3.9072 37 1 6.8860 -10.4943 3.2810 38 1 6.3274 -9.3763 4.5485 39 1 6.2321 -12.4809 6.5838 40 1 7.3909 -11.9819 5.4745 41 1 5.9041 -8.8441 1.0185 42 1 6.5415 -8.0652 2.4920 43 1 1.6954 -6.8465 0.4175 44 1 0.3580 -4.7885 0.2378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932955906.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:04 Heat of formation + Delta-G solvation = -69.933060 kcal Electronic energy + Delta-G solvation = -26598.874169 eV Core-core repulsion = 22643.966067 eV Total energy + Delta-G solvation = -3954.908102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -39.65679 -38.76458 -37.40531 -36.60263 -36.30792 -33.88139 -33.67148 -32.26156 -30.54604 -30.07841 -29.28967 -26.72251 -25.52364 -24.24394 -22.08181 -21.30409 -20.92632 -20.23853 -19.84143 -18.18775 -17.96245 -17.73934 -16.98536 -16.45908 -16.32522 -15.65871 -15.32514 -14.81282 -14.58018 -14.46093 -14.13606 -13.97256 -13.58393 -13.53829 -13.10624 -13.00557 -12.67156 -12.64467 -12.53682 -12.45438 -12.34644 -12.17350 -11.84300 -11.73447 -11.46962 -11.30227 -11.19999 -11.09256 -10.97943 -10.79488 -10.72455 -10.62197 -10.44768 -10.41331 -9.31685 -8.82000 -8.31720 -8.14843 -7.16252 -6.43825 -4.02624 -0.20067 2.23868 2.30188 2.42408 3.13675 3.14803 3.17681 3.22995 3.76934 3.85785 3.97659 4.04362 4.17310 4.42202 4.66637 4.70511 4.85639 4.96804 5.10275 5.15950 5.20330 5.27604 5.29987 5.38798 5.47287 5.48455 5.66900 5.71445 5.73680 5.80397 5.89213 5.95669 6.05394 6.22883 6.43595 6.53844 6.71572 6.87327 6.97686 7.02599 7.11505 7.27394 7.42720 7.46375 7.84703 8.01261 9.01755 9.72160 10.74126 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028418 B = 0.001857 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.056349 B =15071.141418 C =15086.942587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.155 3.845 11 C -0.235 4.235 12 C -0.050 4.050 13 C -0.180 4.180 14 C 0.107 3.893 15 N -0.522 5.522 16 C 0.048 3.952 17 C -0.142 4.142 18 C -0.103 4.103 19 H 0.091 0.909 20 C -0.609 4.609 21 S 2.610 3.390 22 N -1.253 6.253 23 O -0.956 6.956 24 O -0.963 6.963 25 C 0.055 3.945 26 C -0.067 4.067 27 C -0.193 4.193 28 H 0.270 0.730 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.420 0.580 40 H 0.412 0.588 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.480 -21.645 8.427 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.102 3.898 11 C -0.255 4.255 12 C -0.069 4.069 13 C -0.181 4.181 14 C -0.020 4.020 15 N -0.246 5.246 16 C -0.079 4.079 17 C -0.180 4.180 18 C -0.124 4.124 19 H 0.109 0.891 20 C -0.739 4.739 21 S 2.702 3.298 22 N -0.925 5.925 23 O -0.945 6.945 24 O -0.952 6.952 25 C -0.074 4.074 26 C -0.086 4.086 27 C -0.213 4.213 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.250 0.750 40 H 0.238 0.762 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.124 0.876 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.193 -21.266 8.422 26.919 hybrid contribution 1.180 0.418 -0.219 1.271 sum 15.373 -20.848 8.203 27.171 Atomic orbital electron populations 1.70031 1.05948 1.27749 1.46067 1.25292 0.95844 0.98829 0.96585 0.85784 0.78692 0.79800 0.79167 1.19535 1.20302 1.19498 1.21274 0.91764 0.80840 1.52896 0.89124 1.83978 1.34366 1.11468 1.78342 1.19394 0.90322 0.88020 0.92105 1.21150 0.93779 0.98898 1.11627 1.20543 0.98221 0.91562 0.96548 1.19026 0.93078 0.93784 1.12198 1.21029 0.98616 0.94881 0.87429 1.63712 1.09482 1.38517 1.12914 1.23034 0.91912 0.97976 0.95018 1.23164 0.97701 0.98239 0.98938 1.22202 0.94805 0.99071 0.96325 0.89104 1.30437 1.11336 1.19564 1.12603 1.04892 0.73975 0.76195 0.74755 1.53254 1.22595 1.79951 1.36704 1.93629 1.55165 1.82383 1.63353 1.93631 1.83527 1.50357 1.67695 1.22851 0.96534 0.89400 0.98617 1.20476 0.92963 0.96532 0.98625 1.20168 0.99462 0.90334 1.11302 0.91990 0.85651 0.87606 0.90866 0.94682 0.89290 0.93160 0.89499 0.89802 0.84709 0.84077 0.75034 0.76176 0.92345 0.90123 0.87578 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 9 O -0.18 -5.11 9.76 0.04 0.00 -5.11 16 10 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 11 C -0.24 -5.11 9.17 -39.40 -0.36 -5.47 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 13 C -0.18 -3.00 5.09 -104.57 -0.53 -3.53 16 14 C 0.11 1.40 4.72 -4.98 -0.02 1.38 16 15 N -0.52 -6.37 5.15 -232.69 -1.20 -7.57 16 16 C 0.05 0.57 5.62 -2.30 -0.01 0.56 16 17 C -0.14 -1.38 5.69 -24.45 -0.14 -1.52 16 18 C -0.10 -0.81 2.93 -88.66 -0.26 -1.07 16 19 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 20 C -0.61 -2.85 5.51 37.16 0.20 -2.64 16 21 S 2.61 17.59 5.82 -107.50 -0.63 16.97 16 22 N -1.25 -4.11 9.36 60.35 0.57 -3.54 16 23 O -0.96 -9.96 17.16 -57.54 -0.99 -10.95 16 24 O -0.96 -10.33 18.10 -57.54 -1.04 -11.37 16 25 C 0.06 0.49 6.45 -2.83 -0.02 0.48 16 26 C -0.07 -1.18 8.92 -39.61 -0.35 -1.53 16 27 C -0.19 -4.08 9.99 -39.39 -0.39 -4.47 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.13 2.74 5.64 -52.48 -0.30 2.44 16 30 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.07 0.88 7.97 -51.93 -0.41 0.46 16 32 H 0.03 0.43 7.79 -51.93 -0.40 0.02 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.58 7.00 -51.93 -0.36 0.22 16 35 H 0.09 0.81 7.95 -51.93 -0.41 0.40 16 36 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 37 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.14 0.46 8.00 -51.92 -0.42 0.04 16 39 H 0.42 1.11 8.96 -34.47 -0.31 0.80 16 40 H 0.41 0.15 8.96 -34.47 -0.31 -0.16 16 41 H 0.06 0.47 7.55 -51.93 -0.39 0.08 16 42 H 0.08 0.65 7.82 -51.93 -0.41 0.25 16 43 H 0.11 1.58 7.50 -52.48 -0.39 1.18 16 44 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -36.98 372.37 -10.32 -47.30 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.05 Total: 3.09 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -2.34 Total: -25.33 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.12 Total: -35.74 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -2.03 Total: -27.43 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 17.59 SS G_CDS: -0.63 Total: 16.97 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.98 -10.32 -47.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932955906.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.633 kcal (2) G-P(sol) polarization free energy of solvation -36.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds