Wall clock time and date at job start Tue Mar 31 2020 22:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86805 * 120.00060 * 2 1 4 4 H 1.48500 * 109.47105 * 240.00272 * 3 2 1 5 5 H 1.48503 * 109.46833 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47094 * 120.00047 * 3 2 1 7 7 C 1.38659 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99723 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99512 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99552 * 185.05867 * 9 7 2 11 11 C 1.38879 * 120.06956 * 354.46721 * 10 9 7 12 12 C 1.38095 * 119.93178 * 180.02562 * 11 10 9 13 13 C 1.38309 * 120.06871 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.93053 * 179.97438 * 13 12 11 15 15 N 1.46901 * 109.46740 * 90.00500 * 14 13 12 16 16 C 1.47843 * 111.00322 * 69.15537 * 15 14 13 17 17 C 1.54911 * 104.79670 * 146.36401 * 16 15 14 18 18 C 1.55402 * 101.73991 * 323.01810 * 17 16 15 19 19 H 1.08994 * 110.67812 * 277.17828 * 18 17 16 20 20 C 1.53000 * 110.84263 * 153.86221 * 18 17 16 21 21 S 1.81402 * 109.47204 * 71.46476 * 20 18 17 22 22 N 1.65596 * 104.45164 * 179.97438 * 21 20 18 23 23 O 1.42100 * 110.54266 * 291.62589 * 21 20 18 24 24 O 1.42109 * 110.54123 * 68.37373 * 21 20 18 25 25 C 1.47449 * 111.00065 * 190.00145 * 15 14 13 26 26 C 1.38297 * 120.13463 * 0.25080 * 13 12 11 27 27 C 1.38104 * 120.07320 * 359.45602 * 26 13 12 28 28 H 0.96999 * 119.99575 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.03563 * 0.04922 * 11 10 9 30 30 H 1.08001 * 119.96847 * 180.02562 * 12 11 10 31 31 H 1.09001 * 109.47351 * 330.00417 * 14 13 12 32 32 H 1.08996 * 109.46888 * 209.99852 * 14 13 12 33 33 H 1.08999 * 110.37006 * 265.19238 * 16 15 14 34 34 H 1.08994 * 110.37471 * 27.53375 * 16 15 14 35 35 H 1.08993 * 110.98831 * 81.02167 * 17 16 15 36 36 H 1.08997 * 110.99032 * 204.83736 * 17 16 15 37 37 H 1.08997 * 109.46881 * 191.46569 * 20 18 17 38 38 H 1.09001 * 109.47265 * 311.46388 * 20 18 17 39 39 H 0.96995 * 120.00491 * 150.00273 * 22 21 20 40 40 H 0.97006 * 120.00059 * 330.00081 * 22 21 20 41 41 H 1.09002 * 109.88202 * 356.14121 * 25 15 14 42 42 H 1.08995 * 109.89401 * 117.17018 * 25 15 14 43 43 H 1.08003 * 119.96502 * 179.69993 * 26 13 12 44 44 H 1.07999 * 120.03448 * 180.27700 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2124 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4572 -3.4395 0.0922 12 6 4.2024 -4.5971 0.1998 13 6 3.5687 -5.8205 0.3203 14 6 4.3850 -7.0819 0.4369 15 7 4.6572 -7.3597 1.8535 16 6 3.4212 -7.7517 2.5637 17 6 3.8847 -8.7777 3.6277 18 6 4.9976 -9.5462 2.8622 19 1 4.5651 -10.3240 2.2329 20 6 6.0171 -10.1406 3.8359 21 16 5.2633 -11.5286 4.7281 22 7 6.4607 -12.0722 5.7344 23 8 4.2492 -11.0637 5.6083 24 8 5.0256 -12.6177 3.8467 25 6 5.6461 -8.4436 1.9989 26 6 2.1875 -5.8892 0.3282 27 6 1.4366 -4.7345 0.2270 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4844 -0.0019 30 1 5.2812 -4.5471 0.1899 31 1 5.3273 -6.9555 -0.0962 32 1 3.8311 -7.9145 0.0034 33 1 2.9686 -6.8845 3.0446 34 1 2.7167 -8.2139 1.8723 35 1 4.2928 -8.2741 4.5039 36 1 3.0698 -9.4454 3.9072 37 1 6.8860 -10.4943 3.2810 38 1 6.3274 -9.3763 4.5485 39 1 6.2321 -12.4809 6.5838 40 1 7.3909 -11.9819 5.4745 41 1 5.9041 -8.8441 1.0185 42 1 6.5415 -8.0652 2.4920 43 1 1.6954 -6.8465 0.4175 44 1 0.3580 -4.7885 0.2378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932955906.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:03 Heat of formation + Delta-G solvation = -100.627670 kcal Electronic energy + Delta-G solvation = -26600.205187 eV Core-core repulsion = 22643.966067 eV Total energy + Delta-G solvation = -3956.239120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.92193 -40.09295 -38.21734 -38.04488 -36.95609 -34.87338 -34.15935 -33.99936 -31.86106 -31.42412 -30.36553 -27.79615 -27.15943 -25.45391 -23.64547 -22.52280 -21.67252 -21.43818 -20.33408 -19.82964 -18.83537 -18.61977 -18.20356 -17.19412 -16.97017 -16.50096 -16.36923 -16.30065 -16.10819 -15.55726 -15.49779 -15.20259 -14.88268 -14.78099 -14.43307 -14.21292 -13.83238 -13.55700 -13.50158 -13.26894 -13.15706 -13.12176 -13.02263 -12.93137 -12.58807 -12.54217 -12.38219 -12.16721 -12.12367 -12.03364 -11.90336 -11.69276 -11.49244 -11.15380 -11.10048 -10.77464 -9.74963 -9.23650 -8.86731 -8.46069 -6.14225 -0.69059 0.62380 0.70512 1.35060 1.46062 1.51606 2.00906 2.18669 2.73826 2.79179 3.06470 3.27724 3.36057 3.42660 3.53940 3.56018 3.81415 4.04808 4.08015 4.14892 4.21973 4.27252 4.39470 4.46609 4.50137 4.61907 4.67317 4.71838 4.80840 4.82752 4.94028 5.02067 5.10104 5.13124 5.17827 5.25180 5.30606 5.32346 5.58604 5.73585 5.82143 6.03931 6.09050 6.15869 6.27824 6.40360 6.98499 7.80094 8.77023 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028418 B = 0.001857 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.056349 B =15071.141418 C =15086.942587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.019 2.981 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.112 3.888 11 C -0.244 4.244 12 C -0.050 4.050 13 C -0.152 4.152 14 C 0.108 3.892 15 N -0.537 5.537 16 C 0.042 3.958 17 C -0.145 4.145 18 C -0.105 4.105 19 H 0.094 0.906 20 C -0.591 4.591 21 S 2.618 3.382 22 N -1.240 6.240 23 O -1.000 7.000 24 O -1.009 7.009 25 C 0.054 3.946 26 C -0.060 4.060 27 C -0.206 4.206 28 H 0.272 0.728 29 H 0.117 0.883 30 H 0.139 0.861 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.173 0.827 38 H 0.163 0.837 39 H 0.424 0.576 40 H 0.428 0.572 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.139 0.861 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.608 -23.611 8.658 31.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.141 6.141 10 C 0.062 3.938 11 C -0.263 4.263 12 C -0.068 4.068 13 C -0.153 4.153 14 C -0.019 4.019 15 N -0.261 5.261 16 C -0.085 4.085 17 C -0.183 4.183 18 C -0.125 4.125 19 H 0.112 0.888 20 C -0.723 4.723 21 S 2.713 3.287 22 N -0.917 5.917 23 O -0.989 6.989 24 O -0.998 6.998 25 C -0.074 4.074 26 C -0.079 4.079 27 C -0.226 4.226 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.191 0.809 38 H 0.181 0.819 39 H 0.255 0.745 40 H 0.257 0.743 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.157 0.843 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 18.363 -23.324 8.674 30.927 hybrid contribution 0.053 0.670 -0.245 0.715 sum 18.416 -22.654 8.429 30.388 Atomic orbital electron populations 1.70186 1.08036 1.28810 1.48968 1.26618 0.96881 1.02806 0.95932 0.84642 0.77373 0.74215 0.79940 1.18064 1.19672 1.18192 1.21777 0.92495 0.81458 1.53184 0.88130 1.83941 1.36006 1.12625 1.81536 1.19938 0.91699 0.87886 0.94263 1.21260 0.92996 1.00114 1.11909 1.20907 0.99748 0.90756 0.95393 1.19593 0.93089 0.95225 1.07407 1.21073 0.99132 0.92962 0.88722 1.63601 1.09958 1.40705 1.11868 1.23008 0.92173 0.97614 0.95715 1.23156 0.98562 0.97924 0.98623 1.22210 0.94785 0.98929 0.96623 0.88751 1.30284 1.11372 1.18259 1.12433 1.04306 0.73979 0.76178 0.74260 1.52868 1.22896 1.79611 1.36292 1.93577 1.57737 1.82994 1.64635 1.93583 1.84653 1.52770 1.68778 1.22955 0.95864 0.88629 0.99946 1.20845 0.93591 0.96511 0.96919 1.20413 0.99752 0.90716 1.11683 0.91890 0.86473 0.84304 0.88683 0.93064 0.91810 0.92949 0.89319 0.90209 0.80890 0.81864 0.74491 0.74260 0.90621 0.88518 0.84314 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.38 13.67 21.62 0.30 -57.08 16 2 C -0.03 -1.45 5.49 84.83 0.47 -0.98 16 3 Si 1.02 43.29 29.55 68.60 2.03 45.32 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.41 -24.42 9.49 67.92 0.64 -23.77 16 8 H 0.10 5.44 5.20 -2.92 -0.02 5.43 16 9 O -0.23 -14.39 9.76 -22.77 -0.22 -14.61 16 10 C 0.11 5.70 6.65 22.58 0.15 5.85 16 11 C -0.24 -10.72 9.17 22.39 0.21 -10.51 16 12 C -0.05 -1.70 9.69 22.25 0.22 -1.49 16 13 C -0.15 -4.64 5.09 -19.83 -0.10 -4.75 16 14 C 0.11 2.33 4.72 85.56 0.40 2.73 16 15 N -0.54 -10.94 5.15 -890.10 -4.59 -15.52 16 16 C 0.04 0.91 5.62 86.77 0.49 1.40 16 17 C -0.14 -2.47 5.69 32.07 0.18 -2.29 16 18 C -0.10 -1.23 2.93 -9.52 -0.03 -1.26 16 19 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 20 C -0.59 -2.89 5.51 71.98 0.40 -2.49 16 21 S 2.62 29.89 5.82 -56.49 -0.33 29.56 16 22 N -1.24 -4.98 9.36 37.02 0.35 -4.63 16 23 O -1.00 -19.97 17.16 -127.65 -2.19 -22.16 16 24 O -1.01 -20.27 18.10 -127.65 -2.31 -22.58 16 25 C 0.05 0.69 6.45 86.64 0.56 1.25 16 26 C -0.06 -2.03 8.92 22.25 0.20 -1.83 16 27 C -0.21 -8.97 9.99 22.39 0.22 -8.74 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 30 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 31 H 0.09 1.72 7.97 -2.39 -0.02 1.70 16 32 H 0.05 0.99 7.79 -2.39 -0.02 0.97 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.08 7.00 -2.39 -0.02 1.06 16 35 H 0.09 1.46 7.95 -2.39 -0.02 1.45 16 36 H 0.08 1.42 7.86 -2.39 -0.02 1.41 16 37 H 0.17 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H 0.16 0.21 8.00 -2.39 -0.02 0.19 16 39 H 0.42 1.43 8.96 -96.75 -0.87 0.56 16 40 H 0.43 -1.16 8.96 -96.74 -0.87 -2.03 16 41 H 0.08 0.76 7.55 -2.39 -0.02 0.74 16 42 H 0.10 0.98 7.82 -2.39 -0.02 0.96 16 43 H 0.14 3.76 7.50 -2.91 -0.02 3.73 16 44 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -87.32 372.37 -3.65 -90.98 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -0.69 Total: 17.60 kcal Atomic # 6 Polarization: -50.88 SS G_CDS: 4.00 Total: -46.88 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -3.94 Total: -77.24 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -4.72 Total: -59.35 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 29.89 SS G_CDS: -0.33 Total: 29.56 kcal Total: -87.32 -3.65 -90.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932955906.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.648 kcal (2) G-P(sol) polarization free energy of solvation -87.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds