Wall clock time and date at job start Tue Mar 31 2020 23:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99958 * 2 1 4 4 H 1.48500 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46895 * 299.99714 * 3 2 1 6 6 H 1.48495 * 109.47064 * 59.99906 * 3 2 1 7 7 C 1.38808 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00272 * 189.09577 * 7 2 1 9 9 N 1.36936 * 120.00188 * 9.10721 * 7 2 1 10 10 C 1.48148 * 127.83329 * 15.56442 * 9 7 2 11 11 C 1.54389 * 104.61369 * 140.42006 * 10 9 7 12 12 H 1.09000 * 117.61860 * 242.76080 * 11 10 9 13 13 C 1.54144 * 104.97020 * 23.83002 * 11 10 9 14 14 H 1.08991 * 121.79152 * 222.19937 * 13 11 10 15 15 C 1.48140 * 127.84259 * 195.57452 * 9 7 2 16 16 C 1.53004 * 59.75346 * 114.13581 * 13 11 10 17 17 H 1.08993 * 117.44502 * 252.37384 * 16 13 11 18 18 N 1.46503 * 117.43903 * 107.62842 * 16 13 11 19 19 C 1.34773 * 119.99747 * 135.99980 * 18 16 13 20 20 O 1.21638 * 120.00084 * 359.97438 * 19 18 16 21 21 C 1.47147 * 119.99837 * 179.97438 * 19 18 16 22 22 C 1.37893 * 120.51374 * 359.72644 * 21 19 18 23 23 N 1.34162 * 122.24798 * 179.69524 * 22 21 19 24 24 H 0.96999 * 118.68543 * 180.30189 * 23 22 21 25 25 C 1.37270 * 122.62312 * 0.59502 * 23 22 21 26 26 C 1.39514 * 121.53295 * 179.70964 * 25 23 22 27 27 C 1.37764 * 118.82950 * 180.02562 * 26 25 23 28 28 N 1.32246 * 121.59452 * 359.95387 * 27 26 25 29 29 C 1.31759 * 122.17366 * 0.02562 * 28 27 26 30 30 C 1.39247 * 120.00043 * 0.02562 * 29 28 27 31 31 C 1.47253 * 120.51312 * 179.97438 * 21 19 18 32 32 O 1.21843 * 121.48613 * 0.02673 * 31 21 19 33 33 H 0.96999 * 119.99948 * 359.97438 * 1 2 3 34 34 H 1.08996 * 110.41276 * 21.63653 * 10 9 7 35 35 H 1.09002 * 110.41081 * 259.20027 * 10 9 7 36 36 H 1.09005 * 110.40472 * 338.36140 * 15 9 7 37 37 H 1.08992 * 110.41612 * 100.79201 * 15 9 7 38 38 H 0.96999 * 119.99997 * 315.72199 * 18 16 13 39 39 H 1.08004 * 118.87993 * 359.97438 * 22 21 19 40 40 H 1.08000 * 120.58701 * 0.04293 * 26 25 23 41 41 H 1.08000 * 119.20108 * 179.97438 * 27 26 25 42 42 H 1.08000 * 120.00540 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1484 9 7 1.3386 -2.3806 -0.1866 10 6 -0.0341 -2.5710 -0.7103 11 6 0.0640 -3.8172 -1.6164 12 1 -0.1482 -3.6883 -2.6777 13 6 1.2857 -4.5965 -1.0908 14 1 2.0088 -5.0539 -1.7658 15 6 1.8196 -3.7545 0.0887 16 6 -0.1183 -5.1932 -0.9725 17 1 -0.5674 -5.2278 0.0200 18 7 -0.4525 -6.3131 -1.8559 19 6 -1.1060 -7.3854 -1.3666 20 8 -1.4179 -7.4236 -0.1915 21 6 -1.4422 -8.5101 -2.2540 22 6 -1.0986 -8.4754 -3.5890 23 7 -1.3825 -9.4835 -4.4276 24 1 -1.1128 -9.4066 -5.3562 25 6 -2.0445 -10.6167 -4.0253 26 6 -2.3333 -11.6489 -4.9184 27 6 -3.0008 -12.7612 -4.4547 28 7 -3.3700 -12.8703 -3.1895 29 6 -3.1234 -11.9274 -2.3028 30 6 -2.4538 -10.7685 -2.6869 31 6 -2.1554 -9.6875 -1.7313 32 8 -2.4852 -9.7640 -0.5609 33 1 -0.4850 0.8400 0.0004 34 1 -0.3432 -1.7021 -1.2913 35 1 -0.7317 -2.7500 0.1079 36 1 2.9092 -3.7784 0.1106 37 1 1.4117 -4.1182 1.0317 38 1 -0.2070 -6.2810 -2.7937 39 1 -0.5794 -7.6092 -3.9717 40 1 -2.0385 -11.5773 -5.9549 41 1 -3.2278 -13.5636 -5.1410 42 1 -3.4413 -12.0529 -1.2784 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960115541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:24 Heat of formation + Delta-G solvation = 57.578325 kcal Electronic energy + Delta-G solvation = -27748.246968 eV Core-core repulsion = 23695.716975 eV Total energy + Delta-G solvation = -4052.529993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.87032 -39.88964 -38.84721 -38.40827 -37.80788 -34.48140 -33.25413 -32.38779 -31.97144 -31.07739 -30.00138 -27.14804 -25.92990 -25.29390 -25.06141 -23.16969 -22.36098 -20.97254 -20.43995 -19.44403 -19.32054 -18.95174 -18.41971 -16.91549 -16.61136 -16.37428 -16.05504 -15.89471 -15.78846 -15.33639 -14.73456 -14.71444 -14.55365 -14.20099 -13.71721 -13.65722 -13.61134 -13.52609 -13.14138 -12.74698 -12.55555 -12.20291 -11.53506 -11.50734 -10.99341 -10.85874 -10.52975 -10.46124 -10.38023 -10.19580 -10.14806 -10.05164 -9.83290 -9.74814 -9.50187 -9.19622 -8.75220 -8.61880 -8.28338 -6.86993 -5.80299 -3.14507 0.04414 0.13052 1.02081 2.02249 2.36697 2.95980 3.13398 3.37121 3.43120 3.45765 3.55718 3.56586 3.78280 3.94418 4.07246 4.19094 4.31770 4.33565 4.46601 4.72648 4.80988 4.98587 5.03195 5.14729 5.19033 5.36128 5.38187 5.49396 5.57821 5.82361 5.84040 5.89640 6.09235 6.14907 6.22609 6.24187 6.52413 6.70761 6.81895 6.90428 7.34951 7.35783 7.52341 7.53088 7.57664 7.71037 8.19869 8.36062 9.10420 9.73106 10.50239 11.34134 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.035208 B = 0.001935 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.087683 B =14468.849891 C =14831.046883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.184 3.816 11 C -0.180 4.180 12 H 0.102 0.898 13 C -0.182 4.182 14 H 0.102 0.898 15 C 0.155 3.845 16 C 0.100 3.900 17 H 0.133 0.867 18 N -0.701 5.701 19 C 0.575 3.425 20 O -0.508 6.508 21 C -0.305 4.305 22 C 0.203 3.797 23 N -0.594 5.594 24 H 0.425 0.575 25 C 0.222 3.778 26 C -0.223 4.223 27 C 0.149 3.851 28 N -0.508 5.508 29 C 0.197 3.803 30 C -0.241 4.241 31 C 0.437 3.563 32 O -0.436 6.436 33 H 0.254 0.746 34 H 0.091 0.909 35 H 0.027 0.973 36 H 0.051 0.949 37 H 0.029 0.971 38 H 0.389 0.611 39 H 0.172 0.828 40 H 0.147 0.853 41 H 0.166 0.834 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 -24.315 -17.880 30.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.058 3.942 11 C -0.201 4.201 12 H 0.120 0.880 13 C -0.203 4.203 14 H 0.120 0.880 15 C 0.028 3.972 16 C -0.006 4.006 17 H 0.151 0.849 18 N -0.352 5.352 19 C 0.361 3.639 20 O -0.382 6.382 21 C -0.317 4.317 22 C 0.071 3.929 23 N -0.203 5.203 24 H 0.263 0.737 25 C 0.112 3.888 26 C -0.246 4.246 27 C -0.005 4.005 28 N -0.218 5.218 29 C 0.037 3.963 30 C -0.247 4.247 31 C 0.315 3.685 32 O -0.311 6.311 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.223 0.777 39 H 0.189 0.811 40 H 0.165 0.835 41 H 0.183 0.817 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.424 -24.884 -16.025 29.926 hybrid contribution 1.258 1.750 -1.646 2.712 sum -3.166 -23.134 -17.671 29.283 Atomic orbital electron populations 1.69905 1.05044 1.25329 1.55805 1.24910 0.95655 0.97999 1.01801 0.86038 0.78855 0.83536 0.77272 1.20372 1.21673 1.21656 1.19036 0.90841 0.82262 1.43263 0.90469 1.45185 1.13346 1.00009 1.73145 1.21071 0.86977 0.92388 0.93742 1.24626 1.02366 0.92664 1.00473 0.88015 1.24353 0.90484 1.02457 1.03053 0.88042 1.21138 0.97205 0.85802 0.93047 1.21836 0.98378 0.84589 0.95797 0.84912 1.45268 1.59416 1.18314 1.12156 1.17290 0.78157 0.81068 0.87352 1.90887 1.52018 1.79194 1.16068 1.22117 1.15214 1.01181 0.93185 1.22100 0.90666 0.89895 0.90217 1.40727 1.51501 1.14582 1.13484 0.73723 1.17987 0.90847 0.86659 0.93271 1.21715 1.07121 0.95164 1.00585 1.22799 0.89984 0.95411 0.92300 1.67899 1.21038 1.30200 1.02666 1.23036 0.87871 0.85709 0.99681 1.21277 1.08739 1.00971 0.93705 1.19148 0.77870 0.83860 0.87603 1.90792 1.44581 1.78525 1.17181 0.93573 0.89077 0.95537 0.93014 0.95335 0.77651 0.81146 0.83501 0.81717 0.80653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.74 10.86 55.49 0.60 -26.14 16 2 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 3 Si 0.91 21.80 29.56 -169.99 -5.03 16.78 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 7 C -0.23 -6.26 10.35 -15.06 -0.16 -6.42 16 8 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 9 N -0.59 -15.16 3.38 -168.83 -0.57 -15.73 16 10 C 0.18 4.40 5.70 -2.41 -0.01 4.39 16 11 C -0.18 -3.28 7.05 -89.29 -0.63 -3.91 16 12 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 13 C -0.18 -3.17 7.05 -89.26 -0.63 -3.80 16 14 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 15 C 0.15 3.28 7.04 -2.38 -0.02 3.26 16 16 C 0.10 1.67 5.98 -67.92 -0.41 1.27 16 17 H 0.13 2.62 7.40 -51.93 -0.38 2.23 16 18 N -0.70 -9.03 5.51 -54.97 -0.30 -9.33 16 19 C 0.57 8.71 7.76 -12.65 -0.10 8.62 16 20 O -0.51 -10.47 15.12 -14.86 -0.22 -10.70 16 21 C -0.30 -3.45 6.04 -102.75 -0.62 -4.07 16 22 C 0.20 1.09 10.65 -16.66 -0.18 0.91 16 23 N -0.59 -1.97 5.21 -10.38 -0.05 -2.03 16 24 H 0.43 -0.37 8.76 -40.82 -0.36 -0.72 16 25 C 0.22 1.35 6.68 -84.00 -0.56 0.78 16 26 C -0.22 -0.85 9.99 -39.28 -0.39 -1.25 16 27 C 0.15 0.78 11.13 -17.55 -0.20 0.59 16 28 N -0.51 -4.32 10.34 -13.04 -0.13 -4.45 16 29 C 0.20 1.86 10.86 -17.21 -0.19 1.67 16 30 C -0.24 -2.33 5.89 -104.86 -0.62 -2.95 16 31 C 0.44 5.82 7.15 -32.22 -0.23 5.59 16 32 O -0.44 -7.67 15.92 -15.04 -0.24 -7.91 16 33 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.09 2.41 6.51 -51.93 -0.34 2.07 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.39 3.31 6.83 -40.82 -0.28 3.03 16 39 H 0.17 0.27 6.30 -52.48 -0.33 -0.06 16 40 H 0.15 0.03 8.06 -52.49 -0.42 -0.39 16 41 H 0.17 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.18 1.59 7.83 -52.49 -0.41 1.18 16 LS Contribution 358.58 15.07 5.40 5.40 Total: -1.00 -39.55 358.58 -10.18 -49.73 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.61 Total: -0.03 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -5.03 Total: 4.41 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.46 Total: -57.68 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.46 Total: -18.61 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -39.55 -10.18 -49.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960115541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.304 kcal (2) G-P(sol) polarization free energy of solvation -39.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds