Wall clock time and date at job start Tue Mar 31 2020 23:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99875 * 2 1 4 4 H 1.48506 * 109.47458 * 273.98136 * 3 2 1 5 5 H 1.48500 * 109.47402 * 33.97851 * 3 2 1 6 6 H 1.48500 * 109.47186 * 153.98158 * 3 2 1 7 7 C 1.38806 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 188.84464 * 7 2 1 9 9 N 1.36934 * 120.00292 * 8.84322 * 7 2 1 10 10 C 1.51835 * 127.60929 * 14.12360 * 9 7 2 11 11 C 1.54393 * 102.86455 * 140.54838 * 10 9 7 12 12 H 1.08998 * 117.61774 * 243.60090 * 11 10 9 13 13 C 1.54286 * 106.22147 * 24.12147 * 11 10 9 14 14 H 1.09000 * 121.81787 * 221.53025 * 13 11 10 15 15 C 1.48146 * 127.84066 * 194.47117 * 9 7 2 16 16 C 1.52993 * 59.72336 * 113.48760 * 13 11 10 17 17 H 1.08998 * 117.44477 * 252.35041 * 16 13 11 18 18 N 1.46497 * 117.40813 * 107.66056 * 16 13 11 19 19 C 1.34777 * 119.99971 * 135.77345 * 18 16 13 20 20 O 1.21489 * 120.00125 * 0.02562 * 19 18 16 21 21 C 1.48387 * 120.00175 * 180.02562 * 19 18 16 22 22 C 1.40095 * 119.24088 * 179.72605 * 21 19 18 23 23 C 1.36779 * 119.88615 * 179.80501 * 22 21 19 24 24 C 1.40283 * 118.12693 * 0.41461 * 23 22 21 25 25 C 1.41115 * 122.05569 * 179.78935 * 24 23 22 26 26 O 1.35454 * 120.13638 * 0.02562 * 25 24 23 27 27 N 1.31761 * 119.72521 * 180.02562 * 25 24 23 28 28 C 1.32644 * 122.58134 * 0.02562 * 27 25 24 29 29 C 1.36008 * 122.09464 * 0.02562 * 28 27 25 30 30 C 1.41023 * 118.92373 * 359.97438 * 29 28 27 31 31 N 1.32042 * 119.23430 * 359.97438 * 21 19 18 32 32 H 0.97007 * 119.99966 * 359.97438 * 1 2 3 33 33 H 1.08997 * 112.25961 * 21.87091 * 10 9 7 34 34 H 1.09000 * 110.21894 * 258.27750 * 10 9 7 35 35 H 1.09000 * 110.41245 * 100.79653 * 15 9 7 36 36 H 1.09005 * 110.40531 * 338.36077 * 15 9 7 37 37 H 0.96996 * 120.00380 * 315.77865 * 18 16 13 38 38 H 1.08005 * 120.05904 * 0.02562 * 22 21 19 39 39 H 1.08003 * 120.93624 * 180.22992 * 23 22 21 40 40 H 0.96706 * 113.99255 * 270.01283 * 26 25 24 41 41 H 1.07996 * 118.95554 * 179.97438 * 28 27 25 42 42 H 1.07997 * 120.53768 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4135 2.0951 -1.3967 5 1 1.4922 2.6269 0.7825 6 1 3.5873 1.4174 0.6142 7 6 2.0102 -1.2021 -0.0005 8 1 3.0806 -1.2078 0.1433 9 7 1.3378 -2.3809 -0.1834 10 6 -0.0823 -2.5692 -0.6865 11 6 0.0376 -3.8094 -1.5982 12 1 -0.1715 -3.6782 -2.6598 13 6 1.2724 -4.5907 -1.1029 14 1 1.9831 -5.0414 -1.7956 15 6 1.8279 -3.7556 0.0710 16 6 -0.1278 -5.1909 -0.9618 17 1 -0.5570 -5.2348 0.0392 18 7 -0.4764 -6.3047 -1.8473 19 6 -1.1140 -7.3844 -1.3531 20 8 -1.4001 -7.4338 -0.1734 21 6 -1.4666 -8.5128 -2.2498 22 6 -2.1241 -9.6298 -1.7181 23 6 -2.4589 -10.6757 -2.5335 24 6 -2.1172 -10.5913 -3.8915 25 6 -2.4186 -11.6235 -4.8052 26 8 -3.0576 -12.7406 -4.3827 27 7 -2.0758 -11.4963 -6.0710 28 6 -1.4486 -10.4243 -6.5369 29 6 -1.1140 -9.3776 -5.7355 30 6 -1.4453 -9.4341 -4.3659 31 7 -1.1489 -8.4431 -3.5295 32 1 -0.4850 0.8401 0.0004 33 1 -0.4353 -1.7105 -1.2575 34 1 -0.7534 -2.7740 0.1476 35 1 1.4402 -4.1280 1.0192 36 1 2.9177 -3.7768 0.0702 37 1 -0.2482 -6.2653 -2.7892 38 1 -2.3695 -9.6635 -0.6668 39 1 -2.9693 -11.5434 -2.1423 40 1 -2.4645 -13.4450 -4.0872 41 1 -1.1948 -10.3817 -7.5857 42 1 -0.6030 -8.5171 -6.1414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960641941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:57 Heat of formation + Delta-G solvation = 39.534162 kcal Electronic energy + Delta-G solvation = -27547.386011 eV Core-core repulsion = 23494.073564 eV Total energy + Delta-G solvation = -4053.312447 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.57630 -41.23033 -40.05774 -39.17430 -37.99344 -36.08892 -34.66042 -34.07564 -32.98156 -31.90329 -31.01236 -28.91716 -27.88111 -26.79516 -25.47760 -23.83107 -23.59118 -22.17577 -21.99014 -20.83101 -20.42640 -19.41670 -18.97512 -18.83668 -18.25344 -17.61253 -17.29921 -16.71997 -16.68217 -16.27501 -15.96484 -15.49077 -15.42642 -15.16310 -14.88269 -14.64873 -14.59266 -14.26836 -13.78414 -13.76624 -13.55501 -13.31846 -13.23997 -12.92750 -12.79287 -12.71695 -12.18583 -12.02666 -11.86902 -11.79921 -11.70837 -11.63565 -11.06375 -10.86941 -10.73404 -10.62371 -10.61655 -9.80701 -9.50650 -8.92821 -7.90027 -5.25527 -1.20888 -0.66762 0.55448 1.17838 1.47550 1.49016 1.58423 1.67412 1.99985 2.39792 2.48688 2.64438 2.76655 2.87887 3.29105 3.30676 3.41490 3.47950 3.52668 3.62405 3.78897 3.79703 3.88499 4.11290 4.22443 4.34999 4.43708 4.46500 4.48983 4.61260 4.71526 4.77460 4.86637 4.88359 4.98615 5.15656 5.24843 5.33015 5.39383 5.43740 5.48557 5.64722 6.11385 6.13781 6.44065 6.49804 6.76016 6.92488 6.96225 7.65780 8.45300 9.24385 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.001946 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.966392 B =14385.596665 C =14964.205725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.981 3.019 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.236 4.236 8 H 0.083 0.917 9 N -0.623 5.623 10 C 0.189 3.811 11 C -0.176 4.176 12 H 0.123 0.877 13 C -0.163 4.163 14 H 0.134 0.866 15 C 0.153 3.847 16 C 0.113 3.887 17 H 0.116 0.884 18 N -0.663 5.663 19 C 0.569 3.431 20 O -0.554 6.554 21 C 0.134 3.866 22 C -0.141 4.141 23 C -0.008 4.008 24 C -0.174 4.174 25 C 0.373 3.627 26 O -0.477 6.477 27 N -0.523 5.523 28 C 0.118 3.882 29 C -0.151 4.151 30 C 0.148 3.852 31 N -0.458 5.458 32 H 0.249 0.751 33 H 0.064 0.936 34 H 0.006 0.994 35 H 0.022 0.978 36 H 0.064 0.936 37 H 0.421 0.579 38 H 0.164 0.836 39 H 0.191 0.809 40 H 0.430 0.570 41 H 0.198 0.802 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.552 -27.971 -12.539 30.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.809 3.191 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.349 5.349 10 C 0.064 3.936 11 C -0.197 4.197 12 H 0.141 0.859 13 C -0.184 4.184 14 H 0.152 0.848 15 C 0.027 3.973 16 C 0.006 3.994 17 H 0.134 0.866 18 N -0.312 5.312 19 C 0.354 3.646 20 O -0.431 6.431 21 C -0.019 4.019 22 C -0.162 4.162 23 C -0.036 4.036 24 C -0.180 4.180 25 C 0.178 3.822 26 O -0.288 6.288 27 N -0.243 5.243 28 C -0.025 4.025 29 C -0.172 4.172 30 C 0.019 3.981 31 N -0.170 5.170 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.024 0.976 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.259 0.741 38 H 0.182 0.818 39 H 0.208 0.792 40 H 0.293 0.707 41 H 0.214 0.786 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.947 -27.350 -12.833 30.468 hybrid contribution 0.425 0.996 0.808 1.351 sum -3.522 -26.353 -12.025 29.181 Atomic orbital electron populations 1.70079 1.06482 1.25650 1.57521 1.25716 0.96532 1.01226 1.02434 0.85030 0.77798 0.78930 0.77349 1.21259 1.22267 1.19157 1.19416 0.91327 0.83600 1.42153 0.89964 1.46383 1.12150 1.00862 1.75480 1.21472 0.85493 0.93361 0.93239 1.24298 1.03662 0.91046 1.00702 0.85879 1.24304 0.90694 1.01463 1.01938 0.84841 1.21192 0.97851 0.84242 0.93976 1.21550 0.98117 0.84720 0.95029 0.86631 1.45083 1.56820 1.16118 1.13198 1.18199 0.77668 0.82065 0.86695 1.90795 1.54973 1.80377 1.16937 1.21327 0.95838 0.94386 0.90364 1.21949 0.98249 0.92497 1.03475 1.21750 0.92765 0.98890 0.90189 1.20096 1.03425 0.97662 0.96813 1.19290 0.88323 0.87662 0.86928 1.84661 1.35307 1.25069 1.83745 1.67175 1.13024 1.28054 1.16032 1.22518 0.91782 0.86395 1.01808 1.22020 1.02604 1.02137 0.90408 1.19153 0.94843 0.89109 0.94945 1.67855 1.18241 1.28186 1.02757 0.94159 0.91738 0.97593 0.96027 0.91718 0.74099 0.81803 0.79221 0.70674 0.78551 0.81316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.17 10.79 21.65 0.23 -56.94 16 2 C -0.07 -3.74 5.43 84.86 0.46 -3.27 16 3 Si 0.98 45.58 29.56 68.60 2.03 47.60 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.24 -13.24 10.37 84.03 0.87 -12.37 16 8 H 0.08 4.39 7.84 -2.91 -0.02 4.37 16 9 N -0.62 -32.29 3.45 -678.13 -2.34 -34.64 16 10 C 0.19 9.29 5.91 85.79 0.51 9.80 16 11 C -0.18 -6.52 6.96 -9.88 -0.07 -6.59 16 12 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 13 C -0.16 -5.53 7.06 -9.89 -0.07 -5.60 16 14 H 0.13 3.83 8.14 -2.39 -0.02 3.81 16 15 C 0.15 6.36 7.05 86.54 0.61 6.97 16 16 C 0.11 3.71 5.97 44.99 0.27 3.97 16 17 H 0.12 4.35 7.40 -2.39 -0.02 4.33 16 18 N -0.66 -17.96 5.55 -444.91 -2.47 -20.43 16 19 C 0.57 15.92 7.82 86.95 0.68 16.60 16 20 O -0.55 -18.82 15.85 -3.68 -0.06 -18.88 16 21 C 0.13 3.01 6.75 42.27 0.29 3.29 16 22 C -0.14 -2.43 9.54 22.38 0.21 -2.22 16 23 C -0.01 -0.10 9.68 22.43 0.22 0.11 16 24 C -0.17 -2.67 5.76 -21.15 -0.12 -2.80 16 25 C 0.37 5.20 7.82 85.41 0.67 5.87 16 26 O -0.48 -4.29 12.89 -87.52 -1.13 -5.42 16 27 N -0.52 -8.08 10.33 -309.12 -3.19 -11.28 16 28 C 0.12 1.39 11.05 84.05 0.93 2.32 16 29 C -0.15 -2.04 10.07 22.43 0.23 -1.82 16 30 C 0.15 2.68 6.63 40.57 0.27 2.95 16 31 N -0.46 -9.63 9.51 -177.67 -1.69 -11.32 16 32 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 33 H 0.06 3.55 6.57 -2.39 -0.02 3.53 16 34 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 37 H 0.42 9.70 8.13 -92.71 -0.75 8.94 16 38 H 0.16 2.60 7.60 -2.91 -0.02 2.57 16 39 H 0.19 0.93 7.72 -2.91 -0.02 0.90 16 40 H 0.43 -0.68 9.06 -74.05 -0.67 -1.35 16 41 H 0.20 0.96 8.06 -2.91 -0.02 0.93 16 42 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -76.34 362.56 -2.99 -79.34 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -0.32 Total: 14.74 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 5.94 Total: 17.22 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -9.46 Total: -134.60 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -1.19 Total: -24.30 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -76.34 -2.99 -79.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960641941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.871 kcal (2) G-P(sol) polarization free energy of solvation -76.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds