Wall clock time and date at job start Tue Mar 31 2020 23:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48501 * 109.47317 * 265.38468 * 3 2 1 5 5 H 1.48500 * 109.47235 * 25.38694 * 3 2 1 6 6 H 1.48500 * 109.46986 * 145.38779 * 3 2 1 7 7 C 1.38809 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00330 * 343.43480 * 7 2 1 9 9 N 1.36945 * 119.99937 * 163.43619 * 7 2 1 10 10 C 1.48141 * 127.83862 * 160.87665 * 9 7 2 11 11 C 1.54393 * 104.61589 * 140.41411 * 10 9 7 12 12 H 1.09003 * 117.61410 * 244.78396 * 11 10 9 13 13 C 1.54282 * 104.96098 * 23.86778 * 11 10 9 14 14 H 1.08996 * 121.81661 * 223.07835 * 13 11 10 15 15 C 1.48143 * 127.83426 * 340.87837 * 9 7 2 16 16 C 1.52998 * 118.12360 * 87.19420 * 11 10 9 17 17 H 1.09002 * 117.43993 * 16.10101 * 16 11 10 18 18 N 1.46489 * 117.44724 * 160.80751 * 16 11 10 19 19 C 1.34779 * 120.00423 * 224.23887 * 18 16 11 20 20 O 1.21576 * 119.99553 * 359.97438 * 19 18 16 21 21 C 1.47526 * 120.00085 * 179.97438 * 19 18 16 22 22 C 1.36635 * 126.83288 * 179.97438 * 21 19 18 23 23 C 1.42163 * 103.79341 * 179.97438 * 22 21 19 24 24 C 1.48479 * 126.83840 * 179.97438 * 23 22 21 25 25 C 1.39261 * 119.71791 * 179.72903 * 24 23 22 26 26 C 1.38457 * 119.07064 * 179.77521 * 25 24 23 27 27 C 1.38749 * 118.49863 * 0.49231 * 26 25 24 28 28 C 1.38294 * 119.35390 * 359.75452 * 27 26 25 29 29 N 1.31727 * 120.88714 * 359.97438 * 28 27 26 30 30 N 1.30916 * 106.31885 * 0.02562 * 23 22 21 31 31 O 1.20863 * 111.81440 * 359.69056 * 30 23 22 32 32 H 0.97002 * 119.99885 * 359.97438 * 1 2 3 33 33 H 1.08994 * 110.40776 * 259.19545 * 10 9 7 34 34 H 1.09003 * 110.40887 * 21.63063 * 10 9 7 35 35 H 1.09001 * 110.40962 * 338.36857 * 15 9 7 36 36 H 1.08994 * 110.41268 * 100.80330 * 15 9 7 37 37 H 0.97006 * 119.99756 * 44.23769 * 18 16 11 38 38 H 1.08009 * 128.10092 * 0.02562 * 22 21 19 39 39 H 1.08002 * 120.46936 * 0.02562 * 25 24 23 40 40 H 1.08000 * 120.75059 * 180.22066 * 26 25 24 41 41 H 1.07998 * 120.32195 * 179.72361 * 27 26 25 42 42 H 1.07998 * 119.55809 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5952 1.9901 -1.3955 5 1 1.4023 2.6788 0.6002 6 1 3.4956 1.4702 0.7953 7 6 2.0102 -1.2022 -0.0005 8 1 1.5038 -2.1182 0.2657 9 7 3.3370 -1.2266 -0.3387 10 6 4.3319 -2.2824 -0.0386 11 6 5.1890 -2.3853 -1.3186 12 1 5.1497 -3.3192 -1.8793 13 6 5.0380 -1.0144 -2.0102 14 1 4.8863 -0.9272 -3.0861 15 6 4.1029 -0.2033 -1.0875 16 6 6.3948 -1.4536 -1.4560 17 1 6.7526 -0.9587 -0.5531 18 7 7.4301 -1.8273 -2.4227 19 6 8.7318 -1.7336 -2.0861 20 8 9.0468 -1.3386 -0.9803 21 6 9.7744 -2.1105 -3.0595 22 6 11.1267 -2.0702 -2.8681 23 6 11.6577 -2.5319 -4.1034 24 6 13.0922 -2.6898 -4.4522 25 6 13.4482 -3.1630 -5.7127 26 6 14.7900 -3.3005 -6.0254 27 6 15.7317 -2.9694 -5.0617 28 6 15.3069 -2.5103 -3.8283 29 7 14.0236 -2.3838 -3.5591 30 7 10.6299 -2.7892 -4.8724 31 8 9.5826 -2.5680 -4.3112 32 1 -0.4850 0.8401 0.0004 33 1 4.9504 -1.9915 0.8105 34 1 3.8319 -3.2302 0.1612 35 1 3.4302 0.4176 -1.6791 36 1 4.6857 0.4123 -0.4023 37 1 7.1788 -2.1422 -3.3051 38 1 11.6659 -1.7609 -1.9848 39 1 12.6884 -3.4153 -6.4376 40 1 15.0966 -3.6616 -6.9960 41 1 16.7861 -3.0697 -5.2726 42 1 16.0370 -2.2520 -3.0756 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962151002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:19 Heat of formation + Delta-G solvation = 142.089968 kcal Electronic energy + Delta-G solvation = -27175.105331 eV Core-core repulsion = 23126.240038 eV Total energy + Delta-G solvation = -4048.865294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.44677 -40.62827 -40.13719 -38.69994 -35.23462 -34.73314 -33.17004 -32.96768 -32.33364 -31.23766 -30.72407 -27.85467 -26.13141 -25.33173 -24.72947 -23.72373 -22.93672 -21.67091 -20.88063 -20.60573 -19.69231 -19.00858 -18.23416 -17.30166 -17.08349 -16.75667 -16.61825 -16.41494 -15.90981 -15.24996 -15.00699 -14.81170 -14.60605 -14.17865 -13.99038 -13.76004 -13.65141 -13.60320 -13.01186 -12.59158 -12.45426 -12.29122 -12.19221 -11.83434 -11.46336 -11.26436 -11.11254 -10.82957 -10.59333 -10.47962 -10.23803 -10.18494 -10.12336 -10.11115 -9.62853 -9.37788 -9.37676 -8.84976 -8.75524 -7.16025 -5.95885 -3.30677 0.05011 0.49576 0.66233 1.77716 2.17064 2.66922 2.77188 3.01677 3.30593 3.30706 3.46802 3.47978 3.83447 3.98165 4.14400 4.28856 4.43611 4.48442 4.50892 4.54486 4.57963 4.74588 4.78762 4.97326 5.02413 5.04874 5.14609 5.28503 5.43841 5.46800 5.48036 5.58090 5.66498 5.68662 5.82788 6.01624 6.17533 6.38043 6.45479 6.51170 6.59949 6.73575 7.08122 7.29110 7.54663 7.55504 7.75818 8.28748 8.74485 9.62648 10.15642 11.20167 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.036874 B = 0.001781 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.167649 B =15720.747319 C =15868.965235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.019 3.981 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.237 4.237 8 H 0.096 0.904 9 N -0.604 5.604 10 C 0.157 3.843 11 C -0.176 4.176 12 H 0.113 0.887 13 C -0.173 4.173 14 H 0.114 0.886 15 C 0.129 3.871 16 C 0.099 3.901 17 H 0.139 0.861 18 N -0.681 5.681 19 C 0.609 3.391 20 O -0.504 6.504 21 C -0.082 4.082 22 C -0.113 4.113 23 C 0.051 3.949 24 C 0.194 3.806 25 C -0.141 4.141 26 C -0.073 4.073 27 C -0.164 4.164 28 C 0.108 3.892 29 N -0.465 5.465 30 N -0.327 5.327 31 O 0.132 5.868 32 H 0.264 0.736 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.408 0.592 38 H 0.191 0.809 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.504 -6.974 -13.036 34.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.364 4.364 8 H 0.113 0.887 9 N -0.328 5.328 10 C 0.031 3.969 11 C -0.197 4.197 12 H 0.131 0.869 13 C -0.194 4.194 14 H 0.132 0.868 15 C 0.003 3.997 16 C -0.007 4.007 17 H 0.156 0.844 18 N -0.329 5.329 19 C 0.392 3.608 20 O -0.379 6.379 21 C -0.147 4.147 22 C -0.135 4.135 23 C -0.105 4.105 24 C 0.057 3.943 25 C -0.162 4.162 26 C -0.099 4.099 27 C -0.185 4.185 28 C -0.051 4.051 29 N -0.175 5.175 30 N -0.024 5.024 31 O 0.053 5.947 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.243 0.757 38 H 0.209 0.791 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 31.013 -6.737 -12.587 34.141 hybrid contribution 0.872 0.679 -0.827 1.380 sum 31.885 -6.058 -13.414 35.118 Atomic orbital electron populations 1.69770 1.05439 1.26626 1.53842 1.25013 0.95289 0.97522 1.00071 0.86918 0.79379 0.84376 0.77515 1.21346 1.22978 1.19523 1.18664 0.80949 0.95120 1.41644 0.88661 1.45548 1.06174 1.19260 1.61828 1.21149 0.89966 0.93776 0.92043 1.24433 0.98685 0.94698 1.01870 0.86909 1.24349 0.95472 0.99513 1.00089 0.86830 1.21701 0.92762 0.92364 0.92878 1.21946 0.82150 1.02230 0.94355 0.84372 1.45237 1.04438 1.65473 1.17756 1.16390 0.81060 0.78440 0.84885 1.90905 1.81213 1.45929 1.19862 1.24207 0.96518 1.06609 0.87380 1.22921 0.91422 0.99678 0.99523 1.21456 0.92906 1.04160 0.91987 1.18213 0.88614 0.96973 0.90472 1.22102 0.97645 0.99508 0.96978 1.21612 0.92323 0.96058 0.99890 1.22327 1.01355 0.99971 0.94800 1.22788 0.91541 0.94822 0.95917 1.67426 1.01769 1.14544 1.33798 1.73967 0.91918 1.16501 1.20006 1.84959 1.26998 1.60250 1.22495 0.92607 0.94699 0.91808 0.90842 0.94400 0.75677 0.79133 0.83992 0.84054 0.84110 0.81788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.95 13.97 55.49 0.78 -27.17 16 2 C 0.02 0.56 5.49 -17.43 -0.10 0.46 16 3 Si 0.89 22.36 24.49 -169.99 -4.16 18.20 16 4 H -0.29 -6.90 6.35 56.52 0.36 -6.54 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.27 -6.66 6.33 56.52 0.36 -6.31 16 7 C -0.24 -6.63 10.78 -15.06 -0.16 -6.79 16 8 H 0.10 2.81 8.06 -52.49 -0.42 2.39 16 9 N -0.60 -14.28 3.19 -168.86 -0.54 -14.82 16 10 C 0.16 2.99 7.04 -2.41 -0.02 2.98 16 11 C -0.18 -2.72 7.06 -89.22 -0.63 -3.35 16 12 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 13 C -0.17 -2.81 7.06 -89.22 -0.63 -3.44 16 14 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 15 C 0.13 2.71 4.49 -2.41 -0.01 2.70 16 16 C 0.10 1.41 5.98 -67.94 -0.41 1.01 16 17 H 0.14 2.19 7.40 -51.93 -0.38 1.81 16 18 N -0.68 -7.90 5.56 -54.86 -0.30 -8.20 16 19 C 0.61 7.68 7.82 -12.47 -0.10 7.59 16 20 O -0.50 -7.97 16.47 5.30 0.09 -7.88 16 21 C -0.08 -0.89 7.28 -36.38 -0.26 -1.16 16 22 C -0.11 -1.22 10.74 -38.66 -0.41 -1.63 16 23 C 0.05 0.54 7.08 -82.53 -0.58 -0.04 16 24 C 0.19 1.88 6.76 -82.93 -0.56 1.32 16 25 C -0.14 -1.06 9.74 -39.12 -0.38 -1.44 16 26 C -0.07 -0.37 10.17 -39.31 -0.40 -0.77 16 27 C -0.16 -0.75 10.11 -39.37 -0.40 -1.15 16 28 C 0.11 0.67 11.18 -17.58 -0.20 0.47 16 29 N -0.47 -4.36 10.12 -9.76 -0.10 -4.46 16 30 N -0.33 -3.53 11.76 33.39 0.39 -3.14 16 31 O 0.13 1.36 11.02 15.54 0.17 1.53 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.67 5.06 -51.93 -0.26 1.40 16 36 H 0.04 0.81 6.79 -51.93 -0.35 0.46 16 37 H 0.41 3.69 8.65 -40.82 -0.35 3.34 16 38 H 0.19 1.91 8.06 -52.48 -0.42 1.49 16 39 H 0.14 0.96 7.88 -52.49 -0.41 0.55 16 40 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 41 H 0.14 0.23 8.06 -52.49 -0.42 -0.20 16 42 H 0.16 0.55 8.06 -52.49 -0.42 0.12 16 LS Contribution 362.06 15.07 5.46 5.46 Total: -1.00 -33.70 362.06 -8.26 -41.96 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.79 Total: 1.77 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -5.25 Total: -3.24 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.22 Total: -57.79 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: 0.26 Total: -6.35 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.16 Total: 18.20 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.70 -8.26 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962151002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.054 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds