Wall clock time and date at job start Tue Mar 31 2020 23:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48501 * 109.47317 * 265.38468 * 3 2 1 5 5 H 1.48500 * 109.47235 * 25.38694 * 3 2 1 6 6 H 1.48500 * 109.46986 * 145.38779 * 3 2 1 7 7 C 1.38809 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00330 * 343.43480 * 7 2 1 9 9 N 1.36945 * 119.99937 * 163.43619 * 7 2 1 10 10 C 1.48141 * 127.83862 * 160.87665 * 9 7 2 11 11 C 1.54393 * 104.61589 * 140.41411 * 10 9 7 12 12 H 1.09003 * 117.61410 * 244.78396 * 11 10 9 13 13 C 1.54282 * 104.96098 * 23.86778 * 11 10 9 14 14 H 1.08996 * 121.81661 * 223.07835 * 13 11 10 15 15 C 1.48143 * 127.83426 * 340.87837 * 9 7 2 16 16 C 1.52998 * 118.12360 * 87.19420 * 11 10 9 17 17 H 1.09002 * 117.43993 * 16.10101 * 16 11 10 18 18 N 1.46489 * 117.44724 * 160.80751 * 16 11 10 19 19 C 1.34779 * 120.00423 * 224.23887 * 18 16 11 20 20 O 1.21576 * 119.99553 * 359.97438 * 19 18 16 21 21 C 1.47526 * 120.00085 * 179.97438 * 19 18 16 22 22 C 1.36635 * 126.83288 * 179.97438 * 21 19 18 23 23 C 1.42163 * 103.79341 * 179.97438 * 22 21 19 24 24 C 1.48479 * 126.83840 * 179.97438 * 23 22 21 25 25 C 1.39261 * 119.71791 * 179.72903 * 24 23 22 26 26 C 1.38457 * 119.07064 * 179.77521 * 25 24 23 27 27 C 1.38749 * 118.49863 * 0.49231 * 26 25 24 28 28 C 1.38294 * 119.35390 * 359.75452 * 27 26 25 29 29 N 1.31727 * 120.88714 * 359.97438 * 28 27 26 30 30 N 1.30916 * 106.31885 * 0.02562 * 23 22 21 31 31 O 1.20863 * 111.81440 * 359.69056 * 30 23 22 32 32 H 0.97002 * 119.99885 * 359.97438 * 1 2 3 33 33 H 1.08994 * 110.40776 * 259.19545 * 10 9 7 34 34 H 1.09003 * 110.40887 * 21.63063 * 10 9 7 35 35 H 1.09001 * 110.40962 * 338.36857 * 15 9 7 36 36 H 1.08994 * 110.41268 * 100.80330 * 15 9 7 37 37 H 0.97006 * 119.99756 * 44.23769 * 18 16 11 38 38 H 1.08009 * 128.10092 * 0.02562 * 22 21 19 39 39 H 1.08002 * 120.46936 * 0.02562 * 25 24 23 40 40 H 1.08000 * 120.75059 * 180.22066 * 26 25 24 41 41 H 1.07998 * 120.32195 * 179.72361 * 27 26 25 42 42 H 1.07998 * 119.55809 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5952 1.9901 -1.3955 5 1 1.4023 2.6788 0.6002 6 1 3.4956 1.4702 0.7953 7 6 2.0102 -1.2022 -0.0005 8 1 1.5038 -2.1182 0.2657 9 7 3.3370 -1.2266 -0.3387 10 6 4.3319 -2.2824 -0.0386 11 6 5.1890 -2.3853 -1.3186 12 1 5.1497 -3.3192 -1.8793 13 6 5.0380 -1.0144 -2.0102 14 1 4.8863 -0.9272 -3.0861 15 6 4.1029 -0.2033 -1.0875 16 6 6.3948 -1.4536 -1.4560 17 1 6.7526 -0.9587 -0.5531 18 7 7.4301 -1.8273 -2.4227 19 6 8.7318 -1.7336 -2.0861 20 8 9.0468 -1.3386 -0.9803 21 6 9.7744 -2.1105 -3.0595 22 6 11.1267 -2.0702 -2.8681 23 6 11.6577 -2.5319 -4.1034 24 6 13.0922 -2.6898 -4.4522 25 6 13.4482 -3.1630 -5.7127 26 6 14.7900 -3.3005 -6.0254 27 6 15.7317 -2.9694 -5.0617 28 6 15.3069 -2.5103 -3.8283 29 7 14.0236 -2.3838 -3.5591 30 7 10.6299 -2.7892 -4.8724 31 8 9.5826 -2.5680 -4.3112 32 1 -0.4850 0.8401 0.0004 33 1 4.9504 -1.9915 0.8105 34 1 3.8319 -3.2302 0.1612 35 1 3.4302 0.4176 -1.6791 36 1 4.6857 0.4123 -0.4023 37 1 7.1788 -2.1422 -3.3051 38 1 11.6659 -1.7609 -1.9848 39 1 12.6884 -3.4153 -6.4376 40 1 15.0966 -3.6616 -6.9960 41 1 16.7861 -3.0697 -5.2726 42 1 16.0370 -2.2520 -3.0756 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962151002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:18 Heat of formation + Delta-G solvation = 118.486117 kcal Electronic energy + Delta-G solvation = -27176.128871 eV Core-core repulsion = 23126.240038 eV Total energy + Delta-G solvation = -4049.888833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.25850 -41.32987 -41.10054 -40.02568 -36.37880 -35.75377 -34.57397 -33.64666 -33.38001 -32.50269 -31.69319 -29.42002 -27.82155 -26.02613 -25.65599 -24.47155 -23.64000 -23.16553 -22.21866 -21.51348 -21.11371 -19.93154 -19.05989 -18.93221 -17.97774 -17.83826 -17.41400 -17.09085 -17.00348 -16.58626 -16.06589 -15.81987 -15.50956 -15.25644 -15.15533 -14.97028 -14.70246 -14.62191 -14.28720 -14.06385 -13.79455 -13.41978 -13.16884 -13.02525 -12.83407 -12.67705 -12.43123 -12.13885 -12.11888 -11.81494 -11.68693 -11.50786 -11.06044 -10.95778 -10.94853 -10.81025 -10.61504 -9.94204 -9.90106 -9.14116 -8.16621 -5.47407 -0.59395 -0.28877 0.22756 1.08607 1.22638 1.29231 1.40665 1.48231 1.68365 1.84633 2.33930 2.40379 2.71902 2.80801 3.02472 3.13616 3.27012 3.58427 3.65103 3.67731 3.74977 3.79574 3.94932 3.97572 4.00574 4.07357 4.17733 4.27406 4.34837 4.51912 4.63176 4.65129 4.70392 4.74485 4.77186 4.97636 5.06726 5.12135 5.16888 5.21725 5.35157 5.59624 5.62478 6.10489 6.12276 6.67453 6.70103 6.79219 6.84658 7.48453 8.12198 9.03245 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.036874 B = 0.001781 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.167649 B =15720.747319 C =15868.965235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.040 4.040 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.310 1.310 6 H -0.263 1.263 7 C -0.226 4.226 8 H 0.065 0.935 9 N -0.626 5.626 10 C 0.149 3.851 11 C -0.165 4.165 12 H 0.140 0.860 13 C -0.171 4.171 14 H 0.139 0.861 15 C 0.121 3.879 16 C 0.123 3.877 17 H 0.127 0.873 18 N -0.666 5.666 19 C 0.618 3.382 20 O -0.537 6.537 21 C -0.081 4.081 22 C -0.116 4.116 23 C 0.049 3.951 24 C 0.160 3.840 25 C -0.149 4.149 26 C -0.072 4.072 27 C -0.150 4.150 28 C 0.095 3.905 29 N -0.495 5.495 30 N -0.334 5.334 31 O 0.138 5.862 32 H 0.262 0.738 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.424 0.576 38 H 0.194 0.806 39 H 0.143 0.857 40 H 0.172 0.828 41 H 0.177 0.823 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.418 -7.416 -15.079 39.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.234 4.234 3 Si 0.777 3.223 4 H -0.195 1.195 5 H -0.238 1.238 6 H -0.188 1.188 7 C -0.354 4.354 8 H 0.083 0.917 9 N -0.351 5.351 10 C 0.024 3.976 11 C -0.186 4.186 12 H 0.158 0.842 13 C -0.192 4.192 14 H 0.157 0.843 15 C -0.004 4.004 16 C 0.016 3.984 17 H 0.145 0.855 18 N -0.316 5.316 19 C 0.402 3.598 20 O -0.414 6.414 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.107 4.107 24 C 0.024 3.976 25 C -0.171 4.171 26 C -0.098 4.098 27 C -0.170 4.170 28 C -0.063 4.063 29 N -0.205 5.205 30 N -0.031 5.031 31 O 0.060 5.940 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.262 0.738 38 H 0.211 0.789 39 H 0.161 0.839 40 H 0.190 0.810 41 H 0.195 0.805 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 34.977 -7.209 -14.678 38.611 hybrid contribution -0.164 0.692 -0.204 0.740 sum 34.813 -6.516 -14.882 38.417 Atomic orbital electron populations 1.69903 1.07077 1.27219 1.56606 1.25656 0.95930 1.00816 1.01001 0.85931 0.77991 0.80035 0.78344 1.19498 1.23840 1.18805 1.18598 0.82968 0.93973 1.39888 0.91735 1.45652 1.05526 1.21133 1.62827 1.21316 0.89616 0.92517 0.94118 1.24315 0.98722 0.95645 0.99872 0.84223 1.24163 0.95966 0.98654 1.00437 0.84320 1.21705 0.93050 0.92314 0.93298 1.21559 0.81951 1.00735 0.94124 0.85538 1.45009 1.03565 1.65008 1.17988 1.16411 0.81281 0.77590 0.84537 1.90897 1.81760 1.47417 1.21368 1.23810 0.95952 1.07331 0.87570 1.23035 0.91511 0.99460 0.99817 1.21739 0.93752 1.03481 0.91681 1.18309 0.88171 0.99381 0.91741 1.22239 0.99066 0.99531 0.96234 1.22030 0.91300 0.95127 1.01336 1.22752 1.03085 0.97536 0.93605 1.23344 0.90912 0.94599 0.97482 1.67374 1.03048 1.15601 1.34525 1.73935 0.92093 1.16964 1.20087 1.84951 1.26890 1.60172 1.22019 0.92859 0.94239 0.91781 0.92529 0.94499 0.73773 0.78929 0.83908 0.81012 0.80528 0.79422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.75 13.97 21.65 0.30 -60.45 16 2 C -0.04 -2.36 5.49 84.86 0.47 -1.89 16 3 Si 0.95 46.87 24.49 68.60 1.68 48.55 16 4 H -0.27 -12.39 6.35 99.48 0.63 -11.76 16 5 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 6 H -0.26 -12.54 6.33 99.48 0.63 -11.91 16 7 C -0.23 -12.92 10.78 84.03 0.91 -12.02 16 8 H 0.06 3.99 8.06 -2.91 -0.02 3.96 16 9 N -0.63 -29.44 3.19 -688.16 -2.20 -31.64 16 10 C 0.15 5.54 7.04 86.54 0.61 6.14 16 11 C -0.16 -4.66 7.06 -9.89 -0.07 -4.73 16 12 H 0.14 3.28 8.14 -2.39 -0.02 3.26 16 13 C -0.17 -5.10 7.06 -9.88 -0.07 -5.17 16 14 H 0.14 3.48 8.14 -2.39 -0.02 3.46 16 15 C 0.12 4.94 4.49 86.54 0.39 5.33 16 16 C 0.12 3.20 5.98 44.99 0.27 3.47 16 17 H 0.13 3.76 7.40 -2.39 -0.02 3.74 16 18 N -0.67 -13.60 5.56 -445.74 -2.48 -16.08 16 19 C 0.62 14.50 7.82 86.69 0.68 15.18 16 20 O -0.54 -16.38 16.47 -3.96 -0.07 -16.44 16 21 C -0.08 -1.67 7.28 24.35 0.18 -1.49 16 22 C -0.12 -2.43 10.74 22.87 0.25 -2.19 16 23 C 0.05 1.03 7.08 42.99 0.30 1.33 16 24 C 0.16 2.98 6.76 42.00 0.28 3.27 16 25 C -0.15 -2.03 9.74 22.57 0.22 -1.81 16 26 C -0.07 -0.53 10.17 22.44 0.23 -0.30 16 27 C -0.15 -0.86 10.11 22.41 0.23 -0.63 16 28 C 0.10 0.97 11.18 84.72 0.95 1.92 16 29 N -0.49 -8.82 10.12 -184.80 -1.87 -10.69 16 30 N -0.33 -6.89 11.76 -48.94 -0.58 -7.47 16 31 O 0.14 2.65 11.02 65.81 0.73 3.37 16 32 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.06 2.49 5.06 -2.39 -0.01 2.48 16 36 H 0.04 1.52 6.79 -2.39 -0.02 1.50 16 37 H 0.42 6.19 8.65 -92.70 -0.80 5.39 16 38 H 0.19 3.86 8.06 -2.91 -0.02 3.84 16 39 H 0.14 1.79 7.88 -2.91 -0.02 1.76 16 40 H 0.17 0.14 8.06 -2.91 -0.02 0.11 16 41 H 0.18 -0.29 8.06 -2.91 -0.02 -0.32 16 42 H 0.19 0.78 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -75.73 362.06 1.46 -74.26 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.13 Total: 10.18 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 5.81 Total: 6.40 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -6.82 Total: -126.33 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.66 Total: -13.07 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.68 Total: 48.55 kcal Total: -75.73 1.46 -74.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962151002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.751 kcal (2) G-P(sol) polarization free energy of solvation -75.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds