Wall clock time and date at job start Tue Mar 31 2020 23:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99826 * 2 1 4 4 H 1.48500 * 109.47061 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47053 * 300.00107 * 3 2 1 6 6 H 1.48502 * 109.47395 * 60.00148 * 3 2 1 7 7 C 1.38815 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.47871 * 126.94417 * 359.97438 * 9 7 2 11 11 C 1.55482 * 105.16890 * 181.92700 * 10 9 7 12 12 H 1.08998 * 116.03599 * 159.75644 * 11 10 9 13 13 C 1.57435 * 99.68777 * 32.86014 * 11 10 9 14 14 C 1.49293 * 126.94253 * 180.02562 * 9 7 2 15 15 H 1.08993 * 116.15324 * 15.83623 * 14 9 7 16 16 C 1.56017 * 104.08995 * 246.69386 * 14 9 7 17 17 N 1.47876 * 105.10700 * 288.76754 * 16 14 9 18 18 C 1.34770 * 126.94488 * 181.97633 * 17 16 14 19 19 O 1.21693 * 119.99951 * 185.16852 * 18 17 16 20 20 C 1.46738 * 120.00202 * 5.17483 * 18 17 16 21 21 C 1.40164 * 120.75507 * 75.31845 * 20 18 17 22 22 N 1.31686 * 119.81545 * 179.97438 * 21 20 18 23 23 C 1.33584 * 121.69702 * 0.02562 * 22 21 20 24 24 C 1.40479 * 119.24196 * 180.02562 * 23 22 21 25 25 C 1.36445 * 119.52730 * 180.02562 * 24 23 22 26 26 C 1.40054 * 119.52910 * 359.97438 * 25 24 23 27 27 C 1.35328 * 120.06793 * 359.97438 * 26 25 24 28 28 N 1.36109 * 120.76655 * 0.02562 * 27 26 25 29 29 C 1.35066 * 119.42891 * 179.97438 * 28 27 26 30 30 O 1.21857 * 120.61392 * 0.02562 * 29 28 27 31 31 H 0.96995 * 119.99916 * 359.97438 * 1 2 3 32 32 H 1.08997 * 110.31831 * 300.91653 * 10 9 7 33 33 H 1.09002 * 110.31105 * 62.99998 * 10 9 7 34 34 H 1.08992 * 112.53410 * 191.70678 * 13 11 10 35 35 H 1.09000 * 112.31005 * 64.17216 * 13 11 10 36 36 H 1.08995 * 110.31511 * 169.85942 * 16 14 9 37 37 H 1.09003 * 110.31473 * 47.67608 * 16 14 9 38 38 H 1.07997 * 120.09628 * 359.96018 * 21 20 18 39 39 H 1.07996 * 120.23199 * 0.26870 * 24 23 22 40 40 H 1.08001 * 120.24166 * 179.97438 * 25 24 23 41 41 H 1.07996 * 119.96956 * 180.02562 * 26 25 24 42 42 H 1.07997 * 119.61714 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 -0.1422 -2.5669 -0.0018 11 6 -0.3647 -4.1049 0.0473 12 1 -1.3440 -4.4358 0.3932 13 6 0.8841 -4.5259 0.9086 14 6 1.9104 -3.7617 -0.0018 15 1 2.9643 -3.8353 0.2660 16 6 1.5093 -4.3451 -1.3921 17 7 0.0525 -4.5830 -1.3045 18 6 -0.7395 -5.1178 -2.2548 19 8 -1.9433 -5.1707 -2.0847 20 6 -0.1503 -5.6365 -3.4945 21 6 0.5312 -6.8613 -3.5065 22 7 1.0524 -7.3096 -4.6297 23 6 0.9515 -6.6253 -5.7725 24 6 1.5266 -7.1522 -6.9409 25 6 1.4275 -6.4579 -8.1113 26 6 0.7534 -5.2304 -8.1308 27 6 0.2051 -4.7399 -6.9950 28 7 0.2995 -5.4262 -5.8234 29 6 -0.2573 -4.9112 -4.7058 30 8 -0.8409 -3.8421 -4.7394 31 1 -0.4850 0.8400 0.0004 32 1 -0.5814 -2.0921 0.8756 33 1 -0.5739 -2.1511 -0.9122 34 1 1.0492 -5.6032 0.9061 35 1 0.8451 -4.1206 1.9197 36 1 2.0354 -5.2819 -1.5754 37 1 1.7286 -3.6262 -2.1816 38 1 0.6288 -7.4357 -2.5972 39 1 2.0401 -8.1019 -6.9137 40 1 1.8657 -6.8520 -9.0164 41 1 0.6704 -4.6752 -9.0534 42 1 -0.3134 -3.7928 -7.0184 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032480719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:33 Heat of formation + Delta-G solvation = 85.314499 kcal Electronic energy + Delta-G solvation = -29740.797925 eV Core-core repulsion = 25689.470663 eV Total energy + Delta-G solvation = -4051.327263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.88837 -40.00746 -38.66641 -37.74647 -37.14742 -34.31822 -33.54809 -32.12914 -31.28173 -30.12829 -28.90057 -28.45105 -25.83811 -25.14876 -25.09850 -23.51994 -23.42986 -21.29282 -19.93000 -19.49409 -18.94840 -18.27071 -17.91050 -17.17694 -16.79456 -16.20420 -15.92792 -15.87225 -15.60829 -15.04341 -14.71501 -14.29825 -14.10395 -13.82434 -13.64145 -13.31456 -12.92615 -12.86066 -12.58656 -12.46318 -12.13092 -11.87345 -11.61301 -11.26016 -11.06940 -10.96633 -10.84615 -10.76122 -10.73882 -10.54732 -10.28184 -10.18714 -10.01290 -9.82662 -9.59065 -9.40894 -8.65587 -7.95768 -7.89135 -6.86748 -5.70861 -3.05626 -0.27344 0.17415 1.75801 1.76311 2.28214 3.04731 3.36265 3.40190 3.44329 3.48112 3.60597 3.67050 4.01212 4.08026 4.25467 4.45374 4.46103 4.63256 4.88072 5.03239 5.14697 5.23014 5.26188 5.32984 5.40336 5.49947 5.58529 5.62103 5.66335 5.69135 5.84756 5.96395 6.11181 6.11605 6.25368 6.35493 6.46850 6.56199 6.64846 6.76837 7.42638 7.48609 7.54364 7.58407 7.79973 8.14332 8.17655 8.66874 9.15474 9.76611 10.45962 11.41162 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.003603 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.298486 B = 7769.773739 C = 8714.838262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.100 3.900 12 H 0.115 0.885 13 C -0.149 4.149 14 C 0.141 3.859 15 H 0.107 0.893 16 C 0.088 3.912 17 N -0.597 5.597 18 C 0.606 3.394 19 O -0.542 6.542 20 C -0.324 4.324 21 C 0.220 3.780 22 N -0.544 5.544 23 C 0.392 3.608 24 C -0.139 4.139 25 C -0.029 4.029 26 C -0.172 4.172 27 C 0.108 3.892 28 N -0.424 5.424 29 C 0.525 3.475 30 O -0.498 6.498 31 H 0.253 0.747 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.175 0.825 39 H 0.168 0.832 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.738 -17.287 -15.569 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.003 4.003 12 H 0.133 0.867 13 C -0.188 4.188 14 C 0.032 3.968 15 H 0.124 0.876 16 C -0.038 4.038 17 N -0.330 5.330 18 C 0.393 3.607 19 O -0.420 6.420 20 C -0.336 4.336 21 C 0.070 3.930 22 N -0.269 5.269 23 C 0.151 3.849 24 C -0.159 4.159 25 C -0.053 4.053 26 C -0.193 4.193 27 C -0.016 4.016 28 N -0.126 5.126 29 C 0.328 3.672 30 O -0.373 6.373 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.192 0.808 39 H 0.185 0.815 40 H 0.171 0.829 41 H 0.178 0.822 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.941 -17.061 -15.290 23.437 hybrid contribution 0.030 1.738 -0.205 1.750 sum 4.971 -15.323 -15.495 22.352 Atomic orbital electron populations 1.69939 1.04929 1.25147 1.56287 1.24831 0.95666 0.97696 1.02070 0.86056 0.78629 0.83862 0.77234 1.20492 1.21840 1.21705 1.19071 0.90365 0.82102 1.44459 0.90167 1.45252 1.01399 0.99274 1.86217 1.21834 0.84627 0.87316 1.01472 1.24342 0.97751 0.97791 0.80381 0.86740 1.24186 0.96638 0.98852 0.99165 1.23170 0.96520 0.86408 0.90734 0.87568 1.23261 0.79912 0.98573 1.02012 1.49134 1.09406 1.59097 1.15403 1.16622 0.85391 0.77464 0.81266 1.90774 1.13956 1.58077 1.79172 1.21356 1.16070 1.01095 0.95086 1.23041 0.84026 0.90315 0.95665 1.68842 1.28910 1.31947 0.97152 1.20717 0.87824 0.80618 0.95696 1.21012 1.03130 1.02951 0.88818 1.21616 0.92513 0.92679 0.98529 1.21069 1.01712 0.98099 0.98402 1.22505 0.96678 0.98412 0.83971 1.44480 1.39210 1.17584 1.11345 1.17025 0.80786 0.86959 0.82448 1.91029 1.41768 1.21037 1.83426 0.93639 0.92543 0.93315 0.91529 0.89692 0.93136 0.91637 0.80835 0.81476 0.82853 0.82177 0.79906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.88 10.56 55.49 0.59 -27.29 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.41 10.38 -15.06 -0.16 -6.56 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.07 3.02 -156.71 -0.47 -15.54 16 10 C 0.17 4.41 4.75 -1.97 -0.01 4.40 16 11 C 0.10 2.06 5.22 -62.62 -0.33 1.73 16 12 H 0.11 2.28 8.08 -51.93 -0.42 1.86 16 13 C -0.15 -2.59 6.83 -22.13 -0.15 -2.74 16 14 C 0.14 2.73 5.52 -62.58 -0.35 2.38 16 15 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 16 C 0.09 1.65 5.99 -1.67 -0.01 1.64 16 17 N -0.60 -12.21 2.95 -158.34 -0.47 -12.68 16 18 C 0.61 12.92 6.91 -12.83 -0.09 12.83 16 19 O -0.54 -13.36 17.48 5.19 0.09 -13.27 16 20 C -0.32 -5.78 4.95 -104.46 -0.52 -6.30 16 21 C 0.22 3.01 11.03 -16.89 -0.19 2.83 16 22 N -0.54 -6.68 10.28 -11.95 -0.12 -6.80 16 23 C 0.39 4.34 7.32 -155.80 -1.14 3.20 16 24 C -0.14 -0.91 9.95 -39.38 -0.39 -1.30 16 25 C -0.03 -0.12 10.08 -39.55 -0.40 -0.52 16 26 C -0.17 -0.90 10.00 -39.94 -0.40 -1.30 16 27 C 0.11 1.03 10.07 -16.69 -0.17 0.86 16 28 N -0.42 -5.52 2.76 -64.90 -0.18 -5.70 16 29 C 0.53 9.46 7.39 -14.85 -0.11 9.35 16 30 O -0.50 -10.94 16.17 5.05 0.08 -10.86 16 31 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.06 1.56 7.46 -51.93 -0.39 1.17 16 33 H 0.05 1.47 7.67 -51.93 -0.40 1.07 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.17 1.93 8.06 -52.49 -0.42 1.50 16 39 H 0.17 0.72 8.06 -52.49 -0.42 0.29 16 40 H 0.15 0.07 8.06 -52.49 -0.42 -0.35 16 41 H 0.16 0.33 8.06 -52.49 -0.42 -0.09 16 42 H 0.18 1.74 7.32 -52.49 -0.38 1.36 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -39.36 355.58 -9.59 -48.95 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.94 Total: 0.21 kcal Atomic # 6 Polarization: 24.74 SS G_CDS: -4.50 Total: 20.25 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: -0.66 Total: -68.01 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: 0.17 Total: -24.13 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -39.36 -9.59 -48.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032480719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.263 kcal (2) G-P(sol) polarization free energy of solvation -39.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds