Wall clock time and date at job start Tue Mar 31 2020 23:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99909 * 2 1 4 4 H 1.48497 * 109.47501 * 275.26561 * 3 2 1 5 5 H 1.48498 * 109.47190 * 35.26758 * 3 2 1 6 6 H 1.48501 * 109.46774 * 155.26532 * 3 2 1 7 7 C 1.38814 * 119.99900 * 180.28069 * 2 1 3 8 8 H 1.07999 * 120.00078 * 172.82021 * 7 2 1 9 9 N 1.36938 * 119.99739 * 352.81913 * 7 2 1 10 10 C 1.47873 * 126.94782 * 5.02618 * 9 7 2 11 11 C 1.56020 * 105.10255 * 181.97943 * 10 9 7 12 12 H 1.08997 * 116.24624 * 159.68675 * 11 10 9 13 13 C 1.57081 * 99.60892 * 32.80501 * 11 10 9 14 14 C 1.49297 * 126.94323 * 184.70759 * 9 7 2 15 15 H 1.08999 * 116.14797 * 15.86765 * 14 9 7 16 16 C 1.55476 * 104.35479 * 246.78209 * 14 9 7 17 17 N 1.47868 * 105.17486 * 288.90283 * 16 14 9 18 18 C 1.34768 * 126.94700 * 181.92886 * 17 16 14 19 19 O 1.21488 * 119.99881 * 180.02562 * 18 17 16 20 20 C 1.48381 * 120.00199 * 359.97438 * 18 17 16 21 21 C 1.40106 * 119.24097 * 179.73152 * 20 18 17 22 22 C 1.36780 * 119.88293 * 179.75997 * 21 20 18 23 23 C 1.40284 * 118.12846 * 0.50440 * 22 21 20 24 24 C 1.41114 * 122.05365 * 179.77091 * 23 22 21 25 25 O 1.35457 * 120.13864 * 359.97101 * 24 23 22 26 26 N 1.31762 * 119.72557 * 179.97438 * 24 23 22 27 27 C 1.32644 * 122.57926 * 359.97438 * 26 24 23 28 28 C 1.36007 * 122.09597 * 359.97438 * 27 26 24 29 29 C 1.41026 * 118.92139 * 0.02562 * 28 27 26 30 30 N 1.32040 * 119.23861 * 0.02562 * 20 18 17 31 31 H 0.97000 * 119.99826 * 359.71926 * 1 2 3 32 32 H 1.08995 * 110.31554 * 300.88495 * 10 9 7 33 33 H 1.08998 * 110.31312 * 63.07284 * 10 9 7 34 34 H 1.09003 * 112.36644 * 64.27025 * 13 11 10 35 35 H 1.09001 * 112.36727 * 191.71525 * 13 11 10 36 36 H 1.09000 * 110.34692 * 169.93803 * 16 14 9 37 37 H 1.09001 * 110.30413 * 47.84664 * 16 14 9 38 38 H 1.08003 * 120.05777 * 0.02562 * 21 20 18 39 39 H 1.07999 * 120.93200 * 180.21593 * 22 21 20 40 40 H 0.96702 * 114.00361 * 270.00590 * 25 24 23 41 41 H 1.08002 * 118.95535 * 180.02562 * 27 26 24 42 42 H 1.07998 * 120.53963 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3865 2.1107 -1.3941 5 1 1.5078 2.6179 0.8084 6 1 3.5990 1.4105 0.5858 7 6 2.0103 -1.2022 -0.0059 8 1 3.0840 -1.2053 -0.1228 9 7 1.3336 -2.3841 0.1366 10 6 -0.1323 -2.5666 0.2027 11 6 -0.3420 -4.0976 0.4180 12 1 -1.3055 -4.3991 0.8289 13 6 0.9355 -4.4196 1.2733 14 6 1.9266 -3.7496 0.2499 15 1 2.9903 -3.7934 0.4835 16 6 1.4838 -4.4715 -1.0540 17 7 0.0323 -4.7038 -0.8941 18 6 -0.7871 -5.3351 -1.7579 19 8 -1.9677 -5.4554 -1.4978 20 6 -0.2475 -5.8824 -3.0272 21 6 -1.1125 -6.5407 -3.9111 22 6 -0.6301 -7.0460 -5.0871 23 6 0.7369 -6.8918 -5.3618 24 6 1.3228 -7.3848 -6.5471 25 8 0.5631 -8.0312 -7.4635 26 7 2.6121 -7.2140 -6.7586 27 6 3.4009 -6.5884 -5.8950 28 6 2.9304 -6.0773 -4.7257 29 6 1.5604 -6.2177 -4.4222 30 7 1.0379 -5.7428 -3.2949 31 1 -0.4850 0.8400 0.0041 32 1 -0.5459 -2.0065 1.0413 33 1 -0.5958 -2.2487 -0.7312 34 1 0.9267 -3.9135 2.2387 35 1 1.1075 -5.4911 1.3749 36 1 2.0097 -5.4205 -1.1591 37 1 1.6724 -3.8373 -1.9202 38 1 -2.1592 -6.6454 -3.6663 39 1 -1.2824 -7.5534 -5.7823 40 1 0.5103 -8.9871 -7.3271 41 1 4.4500 -6.4808 -6.1280 42 1 3.5954 -5.5729 -4.0403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032484824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:51 Heat of formation + Delta-G solvation = 44.336523 kcal Electronic energy + Delta-G solvation = -29345.915202 eV Core-core repulsion = 25292.811001 eV Total energy + Delta-G solvation = -4053.104201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.58036 -41.58861 -40.01077 -38.99439 -37.96511 -35.54785 -34.38324 -33.45986 -32.65487 -30.99873 -30.71684 -30.27548 -27.09694 -26.93509 -25.50138 -25.01022 -23.60493 -22.71383 -21.45567 -20.64282 -20.24482 -19.35299 -18.97562 -18.28941 -18.21485 -17.37369 -17.29637 -16.88443 -16.49903 -16.35893 -15.80411 -15.46643 -15.30065 -15.08784 -14.73392 -14.62026 -14.33370 -13.98432 -13.75293 -13.52816 -13.49093 -13.31441 -13.08624 -12.87019 -12.78447 -12.69659 -12.33955 -12.18218 -12.05068 -11.94093 -11.77181 -11.53128 -11.48590 -10.96729 -10.74672 -10.58197 -10.51181 -9.61441 -9.48996 -8.89764 -7.85641 -5.19559 -1.16446 -0.64782 0.59240 1.25260 1.46712 1.47585 1.57191 1.73393 2.08633 2.40798 2.48670 2.69864 2.85976 3.30575 3.32482 3.35630 3.45248 3.49486 3.59908 3.75166 3.81814 3.93428 3.99008 4.19060 4.22714 4.44619 4.48346 4.58367 4.63799 4.69953 4.77354 4.81694 4.92539 4.99602 5.02468 5.13131 5.17904 5.28133 5.40696 5.44567 5.50197 5.64236 6.09976 6.33962 6.48975 6.51070 6.76034 6.92933 7.02948 7.70839 8.41822 9.26304 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.003346 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.483455 B = 8365.075785 C = 9356.629211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.070 4.070 3 Si 0.975 3.025 4 H -0.294 1.294 5 H -0.299 1.299 6 H -0.260 1.260 7 C -0.229 4.229 8 H 0.094 0.906 9 N -0.617 5.617 10 C 0.187 3.813 11 C 0.100 3.900 12 H 0.124 0.876 13 C -0.125 4.125 14 C 0.129 3.871 15 H 0.135 0.865 16 C 0.119 3.881 17 N -0.586 5.586 18 C 0.566 3.434 19 O -0.571 6.571 20 C 0.132 3.868 21 C -0.142 4.142 22 C -0.010 4.010 23 C -0.176 4.176 24 C 0.374 3.626 25 O -0.475 6.475 26 N -0.521 5.521 27 C 0.119 3.881 28 C -0.152 4.152 29 C 0.145 3.855 30 N -0.453 5.453 31 H 0.244 0.756 32 H 0.026 0.974 33 H -0.008 1.008 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.162 0.838 39 H 0.193 0.807 40 H 0.429 0.571 41 H 0.199 0.801 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.196 -20.737 -9.498 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.263 4.263 3 Si 0.804 3.196 4 H -0.222 1.222 5 H -0.226 1.226 6 H -0.184 1.184 7 C -0.358 4.358 8 H 0.112 0.888 9 N -0.341 5.341 10 C 0.061 3.939 11 C -0.003 4.003 12 H 0.141 0.859 13 C -0.164 4.164 14 C 0.022 3.978 15 H 0.153 0.847 16 C -0.005 4.005 17 N -0.317 5.317 18 C 0.354 3.646 19 O -0.451 6.451 20 C -0.022 4.022 21 C -0.163 4.163 22 C -0.037 4.037 23 C -0.182 4.182 24 C 0.179 3.821 25 O -0.286 6.286 26 N -0.241 5.241 27 C -0.024 4.024 28 C -0.173 4.173 29 C 0.017 3.983 30 N -0.165 5.165 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.010 0.990 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.180 0.820 39 H 0.210 0.790 40 H 0.293 0.707 41 H 0.216 0.784 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.506 -19.909 -9.831 22.877 hybrid contribution -1.089 1.113 0.219 1.573 sum 4.417 -18.796 -9.611 21.568 Atomic orbital electron populations 1.70168 1.06610 1.25142 1.58635 1.25656 0.96375 1.01113 1.03116 0.85102 0.78181 0.79464 0.76844 1.22209 1.22628 1.18436 1.19523 0.91870 0.83227 1.41173 0.88783 1.45507 1.01499 1.01963 1.85166 1.21534 0.85100 0.90178 0.97078 1.24352 1.00045 0.92883 0.82998 0.85874 1.24095 0.93220 1.01395 0.97721 1.23695 0.98352 0.83304 0.92402 0.84745 1.23018 0.78387 0.99953 0.99166 1.49192 1.11093 1.52080 1.19319 1.17972 0.84973 0.78675 0.82997 1.90721 1.16156 1.61388 1.76810 1.21432 0.90389 0.95637 0.94723 1.21919 1.02363 0.97872 0.94137 1.21727 0.93195 0.93650 0.95144 1.20105 0.96967 1.04455 0.96643 1.19251 0.86490 0.91808 0.84545 1.84661 1.66460 1.27472 1.50038 1.67175 1.05385 1.18057 1.33442 1.22492 1.00674 0.91259 0.87967 1.22006 0.92910 1.02117 1.00220 1.19286 0.95460 0.94063 0.89531 1.68189 1.12550 1.17121 1.18630 0.94706 0.95632 0.98979 0.89466 0.87975 0.89101 0.93272 0.82044 0.79036 0.70689 0.78434 0.81790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.64 10.61 21.65 0.23 -58.41 16 2 C -0.07 -3.96 5.48 84.86 0.47 -3.49 16 3 Si 0.98 45.54 29.56 68.60 2.03 47.57 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.23 -12.28 10.36 84.03 0.87 -11.41 16 8 H 0.09 4.67 7.84 -2.91 -0.02 4.64 16 9 N -0.62 -30.03 3.02 -648.86 -1.96 -31.99 16 10 C 0.19 9.41 4.78 87.16 0.42 9.82 16 11 C 0.10 3.87 5.24 46.93 0.25 4.12 16 12 H 0.12 4.58 8.05 -2.39 -0.02 4.56 16 13 C -0.13 -3.94 6.83 33.59 0.23 -3.71 16 14 C 0.13 4.59 5.51 46.87 0.26 4.85 16 15 H 0.14 4.04 8.14 -2.39 -0.02 4.02 16 16 C 0.12 4.13 4.77 86.97 0.42 4.54 16 17 N -0.59 -22.20 2.95 -772.17 -2.28 -24.48 16 18 C 0.57 21.46 7.89 86.95 0.69 22.14 16 19 O -0.57 -23.91 16.62 -3.68 -0.06 -23.97 16 20 C 0.13 4.14 6.73 42.27 0.28 4.42 16 21 C -0.14 -3.47 9.54 22.38 0.21 -3.25 16 22 C -0.01 -0.18 9.68 22.43 0.22 0.04 16 23 C -0.18 -3.73 5.76 -21.15 -0.12 -3.86 16 24 C 0.37 6.97 7.82 85.41 0.67 7.64 16 25 O -0.48 -6.11 12.88 -87.55 -1.13 -7.24 16 26 N -0.52 -10.38 10.33 -309.12 -3.19 -13.57 16 27 C 0.12 2.02 11.05 84.05 0.93 2.95 16 28 C -0.15 -3.06 10.07 22.43 0.23 -2.83 16 29 C 0.14 3.66 6.63 40.57 0.27 3.93 16 30 N -0.45 -13.57 7.04 -177.68 -1.25 -14.82 16 31 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.03 1.43 7.39 -2.39 -0.02 1.41 16 33 H -0.01 -0.48 7.76 -2.39 -0.02 -0.50 16 34 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.09 2.64 7.48 -2.39 -0.02 2.63 16 37 H 0.05 2.00 7.70 -2.39 -0.02 1.99 16 38 H 0.16 3.66 7.60 -2.91 -0.02 3.63 16 39 H 0.19 1.89 7.72 -2.91 -0.02 1.86 16 40 H 0.43 0.73 9.06 -74.06 -0.67 0.06 16 41 H 0.20 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -78.95 351.93 -0.93 -79.88 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.41 Total: 11.13 kcal Atomic # 6 Polarization: 29.62 SS G_CDS: 6.27 Total: 35.89 kcal Atomic # 7 Polarization: -134.81 SS G_CDS: -8.45 Total: -143.27 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -1.19 Total: -31.21 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -78.95 -0.93 -79.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032484824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.217 kcal (2) G-P(sol) polarization free energy of solvation -78.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds