Wall clock time and date at job start Tue Mar 31 2020 23:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99869 * 2 1 4 4 H 1.48494 * 109.47375 * 274.98688 * 3 2 1 5 5 H 1.48505 * 109.47147 * 34.98880 * 3 2 1 6 6 H 1.48503 * 109.46958 * 154.98644 * 3 2 1 7 7 C 1.38813 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99811 * 186.40005 * 7 2 1 9 9 N 1.36931 * 120.00519 * 6.39729 * 7 2 1 10 10 C 1.47876 * 126.94109 * 353.64541 * 9 7 2 11 11 C 1.56023 * 105.10353 * 182.02324 * 10 9 7 12 12 H 1.08994 * 116.24857 * 159.68365 * 11 10 9 13 13 C 1.57085 * 99.60770 * 32.80360 * 11 10 9 14 14 C 1.49286 * 126.95010 * 173.67180 * 9 7 2 15 15 H 1.08999 * 116.14844 * 16.68060 * 14 9 7 16 16 C 1.55999 * 104.30016 * 246.60601 * 14 9 7 17 17 N 1.47870 * 105.11007 * 289.07913 * 16 14 9 18 18 C 1.34774 * 126.94645 * 181.91050 * 17 16 14 19 19 O 1.21607 * 120.00572 * 179.68743 * 18 17 16 20 20 C 1.47492 * 119.99681 * 359.68209 * 18 17 16 21 21 C 1.36315 * 126.31981 * 180.02562 * 20 18 17 22 22 O 1.34227 * 107.07212 * 179.97438 * 21 20 18 23 23 C 1.34508 * 108.04258 * 359.97438 * 22 21 20 24 24 C 1.47909 * 125.50157 * 179.97438 * 23 22 21 25 25 C 1.39482 * 119.74262 * 0.02562 * 24 23 22 26 26 C 1.38406 * 119.05325 * 179.97438 * 25 24 23 27 27 C 1.38779 * 118.51844 * 359.75503 * 26 25 24 28 28 C 1.38332 * 119.39238 * 0.51255 * 27 26 25 29 29 N 1.31692 * 120.90970 * 359.47268 * 28 27 26 30 30 N 1.30861 * 108.99134 * 0.23435 * 23 22 21 31 31 H 0.96998 * 120.00421 * 359.97438 * 1 2 3 32 32 H 1.08991 * 110.31348 * 63.11704 * 10 9 7 33 33 H 1.08994 * 110.40108 * 300.97308 * 10 9 7 34 34 H 1.09007 * 112.36437 * 64.27377 * 13 11 10 35 35 H 1.08989 * 112.37191 * 191.71282 * 13 11 10 36 36 H 1.08999 * 110.40941 * 170.12277 * 16 14 9 37 37 H 1.08989 * 110.21371 * 47.93891 * 16 14 9 38 38 H 1.07999 * 126.46171 * 359.97438 * 21 20 18 39 39 H 1.07999 * 120.47181 * 0.02760 * 25 24 23 40 40 H 1.08003 * 120.74326 * 180.02562 * 26 25 24 41 41 H 1.08007 * 120.30247 * 180.26739 * 27 26 25 42 42 H 1.08001 * 119.54881 * 179.75119 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0851 -1.2051 0.1037 9 7 1.3320 -2.3843 -0.1332 10 6 -0.1349 -2.5698 -0.1545 11 6 -0.3482 -4.1108 -0.2736 12 1 -1.3238 -4.4876 0.0332 13 6 0.9016 -4.6118 0.5355 14 6 1.9240 -3.7464 -0.2850 15 1 2.9747 -3.8465 -0.0128 16 6 1.5268 -4.1803 -1.7298 17 7 0.0703 -4.4286 -1.6711 18 6 -0.7190 -4.8603 -2.6746 19 8 -1.9082 -5.0281 -2.4837 20 6 -0.1404 -5.1291 -4.0044 21 6 -0.8152 -5.5664 -5.1051 22 8 0.0812 -5.6799 -6.0976 23 6 1.2840 -5.3186 -5.6159 24 6 2.5472 -5.3008 -6.3851 25 6 2.5457 -5.6812 -7.7271 26 6 3.7358 -5.6586 -8.4334 27 6 4.8885 -5.2515 -7.7766 28 6 4.8190 -4.8927 -6.4425 29 7 3.6739 -4.9227 -5.7926 30 7 1.1570 -4.9906 -4.3555 31 1 -0.4851 0.8400 0.0004 32 1 -0.5683 -2.0602 -1.0149 33 1 -0.5785 -2.1967 0.7686 34 1 0.8601 -4.3205 1.5851 35 1 1.0725 -5.6814 0.4146 36 1 2.0549 -5.0911 -2.0119 37 1 1.7461 -3.3804 -2.4369 38 1 -1.8719 -5.7811 -5.1668 39 1 1.6289 -5.9880 -8.2083 40 1 3.7659 -5.9472 -9.4737 41 1 5.8320 -5.2189 -8.3013 42 1 5.7152 -4.5793 -5.9278 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032497878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:17 Heat of formation + Delta-G solvation = 103.541680 kcal Electronic energy + Delta-G solvation = -29099.586514 eV Core-core repulsion = 25049.049642 eV Total energy + Delta-G solvation = -4050.536873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.49397 -40.34111 -39.89360 -37.75466 -35.01543 -33.50425 -33.00369 -32.54921 -31.40598 -29.62731 -28.88417 -28.44977 -25.20052 -24.89177 -24.49530 -23.78210 -22.75156 -21.73168 -20.48661 -19.76220 -18.93218 -17.91155 -17.26164 -16.95999 -16.76316 -16.43259 -16.11273 -15.97006 -15.60758 -14.93202 -14.50315 -14.27375 -14.22413 -13.93152 -13.65252 -13.47355 -13.21002 -13.05883 -12.31973 -12.11361 -11.84685 -11.55533 -11.42316 -11.25944 -10.94274 -10.84408 -10.81247 -10.54602 -10.52156 -10.37222 -10.13000 -10.00551 -9.98354 -9.85855 -9.74875 -9.53776 -8.70551 -8.61548 -7.91289 -6.82768 -5.70868 -3.03294 0.21537 0.88116 1.26904 2.15954 2.19905 3.24032 3.42403 3.47328 3.47565 3.49545 3.64486 3.66885 4.16309 4.45727 4.49243 4.62410 4.64455 4.65293 4.83355 4.94048 5.17239 5.29383 5.33404 5.40156 5.42056 5.50738 5.62037 5.66694 5.73615 5.74984 5.82913 5.89184 6.21999 6.24037 6.34516 6.42795 6.51679 6.63889 6.71735 6.90655 7.34757 7.46518 7.57911 7.64402 7.78442 8.09193 8.17705 8.51945 9.17518 9.78719 10.49093 11.42093 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010498 B = 0.003632 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.553648 B = 7707.066623 C = 9281.620797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.175 3.825 11 C 0.097 3.903 12 H 0.115 0.885 13 C -0.151 4.151 14 C 0.137 3.863 15 H 0.106 0.894 16 C 0.101 3.899 17 N -0.585 5.585 18 C 0.608 3.392 19 O -0.554 6.554 20 C -0.051 4.051 21 C 0.014 3.986 22 O -0.190 6.190 23 C 0.217 3.783 24 C 0.209 3.791 25 C -0.143 4.143 26 C -0.074 4.074 27 C -0.162 4.162 28 C 0.111 3.889 29 N -0.438 5.438 30 N -0.395 5.395 31 H 0.253 0.747 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.236 0.764 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.558 -15.014 -15.931 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.099 0.901 9 N -0.322 5.322 10 C 0.050 3.950 11 C -0.005 4.005 12 H 0.133 0.867 13 C -0.191 4.191 14 C 0.029 3.971 15 H 0.124 0.876 16 C -0.024 4.024 17 N -0.315 5.315 18 C 0.395 3.605 19 O -0.435 6.435 20 C -0.175 4.175 21 C -0.060 4.060 22 O -0.075 6.075 23 C 0.011 3.989 24 C 0.072 3.928 25 C -0.165 4.165 26 C -0.100 4.100 27 C -0.182 4.182 28 C -0.048 4.048 29 N -0.149 5.149 30 N -0.125 5.125 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.252 0.748 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.305 -14.383 -14.603 21.444 hybrid contribution -0.201 0.575 -1.497 1.616 sum 6.104 -13.808 -16.100 22.071 Atomic orbital electron populations 1.69924 1.04969 1.25183 1.56510 1.24821 0.95649 0.97632 1.02162 0.86128 0.78684 0.83693 0.77440 1.21735 1.21839 1.20562 1.19057 0.91016 0.82223 1.43233 0.90144 1.45221 1.01214 1.00576 1.85166 1.21922 0.84973 0.87006 1.01143 1.24440 0.97886 0.99212 0.78936 0.86674 1.24165 0.96738 0.98539 0.99662 1.23260 0.96462 0.86306 0.91116 0.87595 1.23253 0.78467 1.00175 1.00467 1.49002 1.10364 1.61676 1.10479 1.16269 0.84962 0.77925 0.81306 1.90778 1.14320 1.55865 1.82495 1.21922 0.89761 1.08327 0.97461 1.25436 0.95728 1.00138 0.84720 1.84368 1.17567 1.65989 1.39597 1.23111 0.84846 1.02152 0.88807 1.17591 0.87598 0.98467 0.89135 1.22078 1.00184 1.00415 0.93795 1.21540 0.91785 0.96127 1.00521 1.22388 0.99809 0.99636 0.96358 1.22882 0.95177 0.95007 0.91694 1.67478 0.97581 1.11157 1.38641 1.71021 1.17284 1.14216 1.10013 0.93692 0.93208 0.92874 0.89719 0.91623 0.92097 0.90424 0.74764 0.83912 0.83977 0.84046 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.51 10.61 55.49 0.59 -26.92 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 22.36 29.56 -169.99 -5.02 17.33 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.28 10.36 -15.06 -0.16 -6.44 16 8 H 0.08 2.13 7.84 -52.49 -0.41 1.71 16 9 N -0.60 -15.08 3.03 -156.35 -0.47 -15.55 16 10 C 0.17 4.36 4.77 -1.67 -0.01 4.35 16 11 C 0.10 1.99 5.24 -62.55 -0.33 1.66 16 12 H 0.12 2.22 8.05 -51.93 -0.42 1.80 16 13 C -0.15 -2.72 6.80 -22.30 -0.15 -2.87 16 14 C 0.14 2.77 5.52 -62.56 -0.35 2.42 16 15 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 16 C 0.10 2.02 4.96 -1.69 -0.01 2.01 16 17 N -0.58 -11.99 2.95 -158.01 -0.47 -12.45 16 18 C 0.61 12.26 7.89 -12.49 -0.10 12.16 16 19 O -0.55 -11.96 17.23 5.27 0.09 -11.86 16 20 C -0.05 -0.90 6.83 -83.34 -0.57 -1.46 16 21 C 0.01 0.19 11.94 30.04 0.36 0.55 16 22 O -0.19 -2.45 10.44 5.36 0.06 -2.40 16 23 C 0.22 3.22 7.95 -14.01 -0.11 3.10 16 24 C 0.21 2.66 6.75 -83.03 -0.56 2.10 16 25 C -0.14 -1.28 9.75 -39.06 -0.38 -1.66 16 26 C -0.07 -0.48 10.16 -39.32 -0.40 -0.88 16 27 C -0.16 -1.06 10.11 -39.35 -0.40 -1.45 16 28 C 0.11 1.02 11.18 -17.58 -0.20 0.83 16 29 N -0.44 -5.86 10.26 -9.84 -0.10 -5.96 16 30 N -0.40 -6.95 9.00 -8.37 -0.08 -7.02 16 31 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.05 1.44 7.53 -51.93 -0.39 1.05 16 33 H 0.05 1.43 7.64 -51.93 -0.40 1.03 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.07 1.04 8.14 -51.94 -0.42 0.62 16 36 H 0.06 1.13 7.72 -51.93 -0.40 0.73 16 37 H 0.08 1.79 7.90 -51.94 -0.41 1.38 16 38 H 0.24 2.28 8.06 -52.49 -0.42 1.85 16 39 H 0.14 1.00 7.88 -52.49 -0.41 0.59 16 40 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 41 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 42 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -35.54 359.63 -8.37 -43.91 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.94 Total: 1.34 kcal Atomic # 6 Polarization: 17.60 SS G_CDS: -3.45 Total: 14.15 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -0.53 Total: -67.90 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.15 Total: -14.26 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.54 -8.37 -43.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032497878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.456 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds