Wall clock time and date at job start Tue Mar 31 2020 23:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99869 * 2 1 4 4 H 1.48494 * 109.47375 * 274.98688 * 3 2 1 5 5 H 1.48505 * 109.47147 * 34.98880 * 3 2 1 6 6 H 1.48503 * 109.46958 * 154.98644 * 3 2 1 7 7 C 1.38813 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99811 * 186.40005 * 7 2 1 9 9 N 1.36931 * 120.00519 * 6.39729 * 7 2 1 10 10 C 1.47876 * 126.94109 * 353.64541 * 9 7 2 11 11 C 1.56023 * 105.10353 * 182.02324 * 10 9 7 12 12 H 1.08994 * 116.24857 * 159.68365 * 11 10 9 13 13 C 1.57085 * 99.60770 * 32.80360 * 11 10 9 14 14 C 1.49286 * 126.95010 * 173.67180 * 9 7 2 15 15 H 1.08999 * 116.14844 * 16.68060 * 14 9 7 16 16 C 1.55999 * 104.30016 * 246.60601 * 14 9 7 17 17 N 1.47870 * 105.11007 * 289.07913 * 16 14 9 18 18 C 1.34774 * 126.94645 * 181.91050 * 17 16 14 19 19 O 1.21607 * 120.00572 * 179.68743 * 18 17 16 20 20 C 1.47492 * 119.99681 * 359.68209 * 18 17 16 21 21 C 1.36315 * 126.31981 * 180.02562 * 20 18 17 22 22 O 1.34227 * 107.07212 * 179.97438 * 21 20 18 23 23 C 1.34508 * 108.04258 * 359.97438 * 22 21 20 24 24 C 1.47909 * 125.50157 * 179.97438 * 23 22 21 25 25 C 1.39482 * 119.74262 * 0.02562 * 24 23 22 26 26 C 1.38406 * 119.05325 * 179.97438 * 25 24 23 27 27 C 1.38779 * 118.51844 * 359.75503 * 26 25 24 28 28 C 1.38332 * 119.39238 * 0.51255 * 27 26 25 29 29 N 1.31692 * 120.90970 * 359.47268 * 28 27 26 30 30 N 1.30861 * 108.99134 * 0.23435 * 23 22 21 31 31 H 0.96998 * 120.00421 * 359.97438 * 1 2 3 32 32 H 1.08991 * 110.31348 * 63.11704 * 10 9 7 33 33 H 1.08994 * 110.40108 * 300.97308 * 10 9 7 34 34 H 1.09007 * 112.36437 * 64.27377 * 13 11 10 35 35 H 1.08989 * 112.37191 * 191.71282 * 13 11 10 36 36 H 1.08999 * 110.40941 * 170.12277 * 16 14 9 37 37 H 1.08989 * 110.21371 * 47.93891 * 16 14 9 38 38 H 1.07999 * 126.46171 * 359.97438 * 21 20 18 39 39 H 1.07999 * 120.47181 * 0.02760 * 25 24 23 40 40 H 1.08003 * 120.74326 * 180.02562 * 26 25 24 41 41 H 1.08007 * 120.30247 * 180.26739 * 27 26 25 42 42 H 1.08001 * 119.54881 * 179.75119 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0851 -1.2051 0.1037 9 7 1.3320 -2.3843 -0.1332 10 6 -0.1349 -2.5698 -0.1545 11 6 -0.3482 -4.1108 -0.2736 12 1 -1.3238 -4.4876 0.0332 13 6 0.9016 -4.6118 0.5355 14 6 1.9240 -3.7464 -0.2850 15 1 2.9747 -3.8465 -0.0128 16 6 1.5268 -4.1803 -1.7298 17 7 0.0703 -4.4286 -1.6711 18 6 -0.7190 -4.8603 -2.6746 19 8 -1.9082 -5.0281 -2.4837 20 6 -0.1404 -5.1291 -4.0044 21 6 -0.8152 -5.5664 -5.1051 22 8 0.0812 -5.6799 -6.0976 23 6 1.2840 -5.3186 -5.6159 24 6 2.5472 -5.3008 -6.3851 25 6 2.5457 -5.6812 -7.7271 26 6 3.7358 -5.6586 -8.4334 27 6 4.8885 -5.2515 -7.7766 28 6 4.8190 -4.8927 -6.4425 29 7 3.6739 -4.9227 -5.7926 30 7 1.1570 -4.9906 -4.3555 31 1 -0.4851 0.8400 0.0004 32 1 -0.5683 -2.0602 -1.0149 33 1 -0.5785 -2.1967 0.7686 34 1 0.8601 -4.3205 1.5851 35 1 1.0725 -5.6814 0.4146 36 1 2.0549 -5.0911 -2.0119 37 1 1.7461 -3.3804 -2.4369 38 1 -1.8719 -5.7811 -5.1668 39 1 1.6289 -5.9880 -8.2083 40 1 3.7659 -5.9472 -9.4737 41 1 5.8320 -5.2189 -8.3013 42 1 5.7152 -4.5793 -5.9278 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032497878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:16 Heat of formation + Delta-G solvation = 77.605236 kcal Electronic energy + Delta-G solvation = -29100.711203 eV Core-core repulsion = 25049.049642 eV Total energy + Delta-G solvation = -4051.661561 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.60747 -41.57633 -41.01053 -39.39176 -36.20724 -35.42791 -33.77576 -33.32889 -33.20283 -30.93315 -30.42092 -30.26125 -27.00137 -26.21893 -25.52836 -24.82684 -24.16584 -22.75711 -21.90873 -21.44761 -20.43345 -19.42782 -18.60647 -18.07781 -18.01420 -17.52490 -17.40500 -17.03950 -16.77643 -16.45769 -16.24517 -15.76698 -15.14941 -15.01389 -14.93385 -14.82547 -14.71857 -14.02539 -13.87227 -13.60396 -13.37690 -13.18152 -12.86590 -12.86067 -12.76599 -12.62682 -12.37659 -12.19233 -12.07912 -11.98402 -11.71335 -11.56614 -11.35406 -11.07574 -10.84173 -10.74423 -10.52049 -9.74605 -9.50676 -8.90886 -7.87007 -5.21335 -0.58767 0.12600 0.29719 1.10413 1.15415 1.43850 1.46531 1.55142 1.77973 2.15717 2.47048 2.56575 2.83160 3.27736 3.32802 3.41885 3.46837 3.72637 3.75406 3.88018 3.94680 3.99401 4.05223 4.12026 4.16949 4.22308 4.43648 4.52722 4.59631 4.64542 4.71567 4.77205 4.88613 4.96995 4.99003 5.09405 5.09787 5.18233 5.25851 5.41405 5.50824 5.62564 5.64971 6.08600 6.27233 6.49748 6.88829 6.96031 7.01767 7.68874 8.40587 9.25084 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010498 B = 0.003632 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.553648 B = 7707.066623 C = 9281.620797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.976 3.024 4 H -0.295 1.295 5 H -0.297 1.297 6 H -0.259 1.259 7 C -0.232 4.232 8 H 0.093 0.907 9 N -0.616 5.616 10 C 0.188 3.812 11 C 0.103 3.897 12 H 0.127 0.873 13 C -0.126 4.126 14 C 0.131 3.869 15 H 0.132 0.868 16 C 0.122 3.878 17 N -0.594 5.594 18 C 0.605 3.395 19 O -0.576 6.576 20 C -0.096 4.096 21 C 0.047 3.953 22 O -0.176 6.176 23 C 0.223 3.777 24 C 0.166 3.834 25 C -0.135 4.135 26 C -0.068 4.068 27 C -0.140 4.140 28 C 0.092 3.908 29 N -0.487 5.487 30 N -0.436 5.436 31 H 0.244 0.756 32 H -0.003 1.003 33 H 0.023 0.977 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.272 0.728 39 H 0.160 0.840 40 H 0.184 0.816 41 H 0.182 0.818 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.847 -17.054 -18.272 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.223 1.223 5 H -0.224 1.224 6 H -0.183 1.183 7 C -0.360 4.360 8 H 0.110 0.890 9 N -0.341 5.341 10 C 0.062 3.938 11 C 0.000 4.000 12 H 0.145 0.855 13 C -0.165 4.165 14 C 0.025 3.975 15 H 0.149 0.851 16 C -0.003 4.003 17 N -0.324 5.324 18 C 0.394 3.606 19 O -0.458 6.458 20 C -0.218 4.218 21 C -0.028 4.028 22 O -0.060 6.060 23 C 0.016 3.984 24 C 0.030 3.970 25 C -0.157 4.157 26 C -0.093 4.093 27 C -0.160 4.160 28 C -0.067 4.067 29 N -0.198 5.198 30 N -0.166 5.166 31 H 0.053 0.947 32 H 0.015 0.985 33 H 0.041 0.959 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.288 0.712 39 H 0.178 0.822 40 H 0.201 0.799 41 H 0.199 0.801 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.629 -16.465 -16.939 25.149 hybrid contribution -0.803 1.157 -0.953 1.700 sum 7.826 -15.308 -17.892 24.814 Atomic orbital electron populations 1.70160 1.06594 1.25182 1.58476 1.25679 0.96450 1.01128 1.02955 0.85079 0.78243 0.79344 0.76845 1.22295 1.22373 1.18345 1.19528 0.91767 0.83311 1.41438 0.88951 1.45473 1.01541 1.02087 1.84960 1.21538 0.84932 0.90018 0.97339 1.24345 0.99835 0.95729 0.80071 0.85544 1.24056 0.93457 0.99931 0.99034 1.23635 0.98256 0.84029 0.91618 0.85071 1.22917 0.78562 0.99550 0.99228 1.49067 1.10563 1.62135 1.10677 1.16672 0.84726 0.77057 0.82136 1.90740 1.15049 1.56835 1.83139 1.21683 0.90766 1.12046 0.97314 1.26032 0.96673 0.96798 0.83308 1.84407 1.17091 1.65558 1.38989 1.23691 0.85923 1.00443 0.88325 1.17738 0.86760 1.01852 0.90610 1.22341 1.02088 0.99058 0.92205 1.22066 0.90557 0.94612 1.02112 1.22838 1.01549 0.96549 0.95070 1.23326 0.94515 0.95501 0.93321 1.67321 0.98924 1.12760 1.40803 1.70921 1.17599 1.16237 1.11823 0.94650 0.98473 0.95851 0.89118 0.88152 0.90297 0.94211 0.71238 0.82193 0.79884 0.80108 0.80024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.27 10.61 21.65 0.23 -60.04 16 2 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 3 Si 0.98 47.19 29.56 68.60 2.03 49.22 16 4 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.23 -13.07 10.36 84.03 0.87 -12.20 16 8 H 0.09 4.86 7.84 -2.91 -0.02 4.84 16 9 N -0.62 -31.99 3.03 -648.58 -1.96 -33.96 16 10 C 0.19 9.91 4.77 87.16 0.42 10.32 16 11 C 0.10 4.27 5.24 46.93 0.25 4.51 16 12 H 0.13 4.95 8.05 -2.39 -0.02 4.93 16 13 C -0.13 -4.34 6.80 33.46 0.23 -4.11 16 14 C 0.13 5.24 5.52 46.92 0.26 5.50 16 15 H 0.13 4.56 8.14 -2.39 -0.02 4.54 16 16 C 0.12 4.97 4.96 87.16 0.43 5.40 16 17 N -0.59 -24.98 2.95 -772.10 -2.28 -27.25 16 18 C 0.61 25.05 7.89 86.68 0.68 25.74 16 19 O -0.58 -25.33 17.23 -4.05 -0.07 -25.40 16 20 C -0.10 -3.42 6.83 40.63 0.28 -3.15 16 21 C 0.05 1.21 11.94 67.37 0.80 2.02 16 22 O -0.18 -4.36 10.44 -3.75 -0.04 -4.40 16 23 C 0.22 6.65 7.95 87.40 0.70 7.35 16 24 C 0.17 4.16 6.75 41.86 0.28 4.44 16 25 C -0.14 -2.09 9.75 22.61 0.22 -1.87 16 26 C -0.07 -0.61 10.16 22.44 0.23 -0.38 16 27 C -0.14 -1.31 10.11 22.42 0.23 -1.08 16 28 C 0.09 1.56 11.18 84.74 0.95 2.50 16 29 N -0.49 -13.01 10.26 -185.04 -1.90 -14.91 16 30 N -0.44 -15.79 9.00 -294.59 -2.65 -18.44 16 31 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.00 -0.18 7.53 -2.39 -0.02 -0.20 16 33 H 0.02 1.35 7.64 -2.39 -0.02 1.33 16 34 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 35 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.08 2.93 7.72 -2.39 -0.02 2.91 16 37 H 0.04 1.92 7.90 -2.39 -0.02 1.90 16 38 H 0.27 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.16 1.78 7.88 -2.91 -0.02 1.76 16 40 H 0.18 0.16 8.06 -2.91 -0.02 0.13 16 41 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -84.34 359.63 1.70 -82.64 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 1.06 Total: 11.15 kcal Atomic # 6 Polarization: 34.10 SS G_CDS: 7.28 Total: 41.38 kcal Atomic # 7 Polarization: -146.04 SS G_CDS: -8.56 Total: -154.60 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.11 Total: -29.79 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -84.34 1.70 -82.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032497878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.242 kcal (2) G-P(sol) polarization free energy of solvation -84.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds