Wall clock time and date at job start Tue Mar 31 2020 23:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99377 * 2 1 4 4 H 1.48509 * 109.46874 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47434 * 299.99625 * 3 2 1 6 6 H 1.48500 * 109.47280 * 60.00441 * 3 2 1 7 7 C 1.38803 * 120.00536 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00547 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.47872 * 126.94247 * 359.97084 * 9 7 2 11 11 C 1.56024 * 105.10532 * 182.02364 * 10 9 7 12 12 H 1.08996 * 116.24601 * 159.68375 * 11 10 9 13 13 C 1.57083 * 99.60240 * 32.80687 * 11 10 9 14 14 C 1.49287 * 126.94742 * 179.97438 * 9 7 2 15 15 H 1.09002 * 116.15224 * 16.68463 * 14 9 7 16 16 C 1.55997 * 104.30200 * 246.59928 * 14 9 7 17 17 N 1.47860 * 105.11536 * 289.08440 * 16 14 9 18 18 C 1.34780 * 126.94574 * 181.90673 * 17 16 14 19 19 O 1.21494 * 120.00427 * 179.68800 * 18 17 16 20 20 C 1.48355 * 119.99697 * 359.68464 * 18 17 16 21 21 C 1.41915 * 126.84092 * 180.02562 * 20 18 17 22 22 C 1.36712 * 103.81324 * 180.02562 * 21 20 18 23 23 C 1.47862 * 126.81699 * 180.02562 * 22 21 20 24 24 C 1.39996 * 120.55696 * 180.24538 * 23 22 21 25 25 C 1.38358 * 118.28941 * 180.28055 * 24 23 22 26 26 C 1.38352 * 119.30433 * 359.73013 * 25 24 23 27 27 N 1.31910 * 121.07960 * 0.02562 * 26 25 24 28 28 C 1.31712 * 121.87443 * 359.97438 * 27 26 25 29 29 O 1.34463 * 106.36427 * 0.25665 * 22 21 20 30 30 N 1.20867 * 111.73966 * 359.52942 * 29 22 21 31 31 H 0.96997 * 120.00098 * 0.02562 * 1 2 3 32 32 H 1.09006 * 110.31299 * 63.12064 * 10 9 7 33 33 H 1.08994 * 110.40434 * 300.97707 * 10 9 7 34 34 H 1.08996 * 112.36903 * 64.27859 * 13 11 10 35 35 H 1.08998 * 112.36584 * 191.71242 * 13 11 10 36 36 H 1.09000 * 110.40797 * 170.12385 * 16 14 9 37 37 H 1.08999 * 110.20967 * 47.94851 * 16 14 9 38 38 H 1.07998 * 128.09462 * 0.05345 * 21 20 18 39 39 H 1.08001 * 120.85250 * 0.02562 * 24 23 22 40 40 H 1.07995 * 120.34693 * 179.71121 * 25 24 23 41 41 H 1.07997 * 119.45808 * 180.02562 * 26 25 24 42 42 H 1.08002 * 119.71306 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3258 -2.3880 0.0005 10 6 -0.1421 -2.5669 0.0006 11 6 -0.3636 -4.1104 0.0538 12 1 -1.3409 -4.4454 0.4010 13 6 0.8843 -4.5247 0.9132 14 6 1.9105 -3.7616 0.0005 15 1 2.9610 -3.8366 0.2814 16 6 1.5090 -4.3513 -1.3867 17 7 0.0514 -4.5838 -1.2997 18 6 -0.7415 -5.1201 -2.2485 19 8 -1.9302 -5.2592 -2.0395 20 6 -0.1627 -5.5405 -3.5481 21 6 -0.8581 -6.1173 -4.6426 22 6 0.1166 -6.3164 -5.5803 23 6 -0.0565 -6.8979 -6.9287 24 6 1.0404 -7.0469 -7.7857 25 6 0.8239 -7.5912 -9.0392 26 6 -0.4562 -7.9723 -9.4001 27 7 -1.4703 -7.8245 -8.5696 28 6 -1.3149 -7.3117 -7.3664 29 8 1.2649 -5.8831 -5.0309 30 7 1.0930 -5.4538 -3.9142 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5737 -2.1538 -0.9112 33 1 -0.5829 -2.0910 0.8765 34 1 0.8453 -4.1183 1.9238 35 1 1.0495 -5.6021 0.9121 36 1 2.0320 -5.2907 -1.5662 37 1 1.7316 -3.6361 -2.1786 38 1 -1.9111 -6.3451 -4.7174 39 1 2.0294 -6.7411 -7.4779 40 1 1.6455 -7.7169 -9.7288 41 1 -0.6279 -8.3978 -10.3778 42 1 -2.1698 -7.2062 -6.7149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032596961.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:04 Heat of formation + Delta-G solvation = 114.032981 kcal Electronic energy + Delta-G solvation = -28639.399160 eV Core-core repulsion = 24589.317224 eV Total energy + Delta-G solvation = -4050.081936 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.26261 -41.69530 -41.04557 -39.52784 -35.64521 -35.36180 -34.84149 -33.39928 -32.99171 -31.03757 -30.72302 -30.35264 -27.06650 -26.61551 -25.33237 -25.14731 -24.22717 -23.42081 -21.94906 -21.47361 -20.27989 -19.36583 -19.04541 -18.68044 -18.07636 -17.83739 -17.43763 -17.17604 -16.77318 -16.37684 -16.16069 -15.71474 -15.16202 -14.98956 -14.90682 -14.86450 -14.65991 -14.04234 -13.97720 -13.68063 -13.46135 -13.19481 -12.97308 -12.84207 -12.80170 -12.77785 -12.38058 -12.24919 -12.04237 -11.95297 -11.89351 -11.69239 -11.59160 -11.49726 -10.80590 -10.68600 -10.58477 -9.74925 -9.66560 -8.96679 -7.88468 -5.24497 -0.64292 0.06409 0.22804 0.94003 1.44530 1.45132 1.52272 1.55520 1.71212 1.95465 2.45138 2.67642 2.80549 3.10368 3.28256 3.35052 3.48771 3.62262 3.68403 3.77789 3.81598 3.88521 3.92708 3.95942 4.03444 4.12879 4.26034 4.47690 4.51330 4.58582 4.64380 4.74956 4.79329 4.85793 4.94688 5.05032 5.06198 5.13538 5.17633 5.39293 5.43547 5.60486 5.62145 6.05382 6.34446 6.68629 6.88842 6.92164 6.99050 7.66163 8.36212 9.23117 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016615 B = 0.002611 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.784388 B =10723.149562 C =11423.634573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.072 4.072 3 Si 0.978 3.022 4 H -0.258 1.258 5 H -0.300 1.300 6 H -0.294 1.294 7 C -0.230 4.230 8 H 0.095 0.905 9 N -0.617 5.617 10 C 0.187 3.813 11 C 0.103 3.897 12 H 0.126 0.874 13 C -0.126 4.126 14 C 0.135 3.865 15 H 0.138 0.862 16 C 0.103 3.897 17 N -0.595 5.595 18 C 0.601 3.399 19 O -0.565 6.565 20 C -0.037 4.037 21 C -0.167 4.167 22 C 0.023 3.977 23 C -0.088 4.088 24 C -0.053 4.053 25 C -0.160 4.160 26 C 0.107 3.893 27 N -0.505 5.505 28 C 0.126 3.874 29 O 0.142 5.858 30 N -0.331 5.331 31 H 0.245 0.755 32 H -0.005 1.005 33 H 0.028 0.972 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.201 0.799 39 H 0.160 0.840 40 H 0.178 0.822 41 H 0.190 0.810 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.493 -19.654 -15.891 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.264 4.264 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.228 1.228 6 H -0.221 1.221 7 C -0.359 4.359 8 H 0.113 0.887 9 N -0.341 5.341 10 C 0.061 3.939 11 C 0.000 4.000 12 H 0.144 0.856 13 C -0.165 4.165 14 C 0.028 3.972 15 H 0.155 0.845 16 C -0.022 4.022 17 N -0.327 5.327 18 C 0.388 3.612 19 O -0.444 6.444 20 C -0.194 4.194 21 C -0.190 4.190 22 C -0.040 4.040 23 C -0.091 4.091 24 C -0.079 4.079 25 C -0.179 4.179 26 C -0.049 4.049 27 N -0.214 5.214 28 C -0.032 4.032 29 O 0.061 5.939 30 N -0.028 5.028 31 H 0.054 0.946 32 H 0.013 0.987 33 H 0.046 0.954 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.218 0.782 39 H 0.178 0.822 40 H 0.195 0.805 41 H 0.207 0.793 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.053 -19.261 -15.394 24.988 hybrid contribution -0.119 1.673 0.174 1.686 sum 3.933 -17.587 -15.220 23.589 Atomic orbital electron populations 1.70153 1.06575 1.25169 1.58705 1.25684 0.96482 1.01238 1.03037 0.85003 0.78533 0.79469 0.76298 1.18240 1.22805 1.22087 1.19570 0.91273 0.83043 1.42002 0.88702 1.45506 1.01508 1.01018 1.86062 1.21549 0.84988 0.89918 0.97492 1.24377 1.00062 0.94432 0.81092 0.85607 1.24083 0.93221 1.00873 0.98337 1.23624 0.98571 0.83466 0.91514 0.84472 1.23163 0.78537 1.00038 1.00442 1.49163 1.10505 1.57861 1.15192 1.16796 0.84967 0.77753 0.81664 1.90732 1.15243 1.58355 1.80063 1.23225 0.90961 1.06773 0.98420 1.22788 1.02922 1.03084 0.90168 1.22434 0.84538 1.01414 0.95652 1.18643 0.97057 1.04209 0.89228 1.22098 0.99075 0.93535 0.93174 1.22503 0.99811 0.98815 0.96761 1.23593 0.88319 0.93465 0.99568 1.67837 1.35618 1.14287 1.03632 1.23051 0.95289 0.92039 0.92826 1.84846 1.32493 1.55910 1.20669 1.74273 1.18715 1.13770 0.96023 0.94628 0.98722 0.95426 0.89098 0.87889 0.89403 0.93512 0.78225 0.82219 0.80499 0.79318 0.81242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.84 10.56 21.65 0.23 -58.61 16 2 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 3 Si 0.98 45.83 29.55 68.60 2.03 47.86 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 7 C -0.23 -12.42 10.37 84.03 0.87 -11.55 16 8 H 0.10 4.75 7.83 -2.91 -0.02 4.73 16 9 N -0.62 -30.34 3.03 -648.51 -1.96 -32.30 16 10 C 0.19 9.45 4.77 87.16 0.42 9.86 16 11 C 0.10 4.04 5.24 46.94 0.25 4.28 16 12 H 0.13 4.72 8.05 -2.39 -0.02 4.70 16 13 C -0.13 -4.02 6.81 33.48 0.23 -3.79 16 14 C 0.13 4.90 5.52 46.94 0.26 5.16 16 15 H 0.14 4.21 8.14 -2.39 -0.02 4.19 16 16 C 0.10 3.70 5.00 87.16 0.44 4.13 16 17 N -0.60 -23.24 2.95 -771.21 -2.27 -25.51 16 18 C 0.60 23.72 7.92 86.94 0.69 24.41 16 19 O -0.56 -24.64 17.29 -3.70 -0.06 -24.71 16 20 C -0.04 -1.23 7.04 42.86 0.30 -0.93 16 21 C -0.17 -4.27 10.35 22.82 0.24 -4.03 16 22 C 0.02 0.50 7.17 24.46 0.18 0.68 16 23 C -0.09 -1.46 5.89 -20.00 -0.12 -1.57 16 24 C -0.05 -0.63 9.88 22.72 0.22 -0.40 16 25 C -0.16 -1.25 10.10 22.33 0.23 -1.03 16 26 C 0.11 1.09 11.17 84.71 0.95 2.04 16 27 N -0.51 -8.28 10.35 -194.76 -2.02 -10.29 16 28 C 0.13 2.06 10.76 85.02 0.91 2.98 16 29 O 0.14 3.52 11.09 67.62 0.75 4.27 16 30 N -0.33 -10.22 9.94 -49.00 -0.49 -10.70 16 31 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 32 H -0.01 -0.33 7.68 -2.38 -0.02 -0.35 16 33 H 0.03 1.55 7.46 -2.39 -0.02 1.53 16 34 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.09 2.67 7.77 -2.39 -0.02 2.66 16 37 H 0.05 1.97 7.94 -2.39 -0.02 1.95 16 38 H 0.20 4.21 7.49 -2.91 -0.02 4.19 16 39 H 0.16 1.38 8.03 -2.91 -0.02 1.36 16 40 H 0.18 0.16 8.06 -2.91 -0.02 0.14 16 41 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 42 H 0.17 2.34 7.17 -2.91 -0.02 2.32 16 Total: -1.00 -76.78 357.81 3.78 -72.99 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.06 Total: 10.39 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 6.52 Total: 26.62 kcal Atomic # 7 Polarization: -130.92 SS G_CDS: -6.51 Total: -137.42 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: 0.69 Total: -20.43 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -76.78 3.78 -72.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032596961.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.026 kcal (2) G-P(sol) polarization free energy of solvation -76.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds