Wall clock time and date at job start Tue Mar 31 2020 23:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48502 * 109.47314 * 239.99888 * 3 2 1 5 5 H 1.48495 * 109.47476 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46846 * 120.00027 * 3 2 1 7 7 C 1.38811 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99955 * 185.26633 * 7 2 1 9 9 N 1.36933 * 120.00028 * 5.26001 * 7 2 1 10 10 C 1.44359 * 116.86716 * 34.78113 * 9 7 2 11 11 C 1.51817 * 114.58927 * 157.24674 * 10 9 7 12 12 N 1.46516 * 111.09020 * 27.98383 * 11 10 9 13 13 C 1.34774 * 121.00202 * 129.01884 * 12 11 10 14 14 O 1.21618 * 119.99878 * 174.02935 * 13 12 11 15 15 C 1.47104 * 120.00378 * 354.03158 * 13 12 11 16 16 C 1.32990 * 120.00326 * 174.88623 * 15 13 12 17 17 C 1.51408 * 136.31607 * 359.62227 * 16 15 13 18 18 C 1.53378 * 87.51958 * 206.06115 * 17 16 15 19 19 C 1.51399 * 136.31563 * 179.97438 * 16 15 13 20 20 C 1.46847 * 117.99212 * 308.74814 * 12 11 10 21 21 H 1.09009 * 110.39323 * 299.63629 * 20 12 11 22 22 C 1.54565 * 109.24989 * 178.04895 * 20 12 11 23 23 S 1.83184 * 102.94898 * 283.46559 * 22 20 12 24 24 O 1.42105 * 109.34123 * 90.86628 * 23 22 20 25 25 O 1.42099 * 109.34873 * 224.03601 * 23 22 20 26 26 C 1.82808 * 97.08161 * 337.45543 * 23 22 20 27 27 C 1.45342 * 116.87024 * 214.75746 * 9 7 2 28 28 H 1.09006 * 108.90029 * 332.73446 * 27 9 7 29 29 H 0.96999 * 119.99899 * 359.97438 * 1 2 3 30 30 H 1.08996 * 108.46315 * 278.56650 * 10 9 7 31 31 H 1.09000 * 108.46433 * 36.09039 * 10 9 7 32 32 H 1.08999 * 109.15700 * 267.57221 * 11 10 9 33 33 H 1.08997 * 109.15886 * 148.39777 * 11 10 9 34 34 H 1.08005 * 119.99342 * 354.88099 * 15 13 12 35 35 H 1.08998 * 113.56153 * 320.64619 * 17 16 15 36 36 H 1.09003 * 113.55848 * 91.37401 * 17 16 15 37 37 H 1.08998 * 113.96471 * 220.29433 * 18 17 16 38 38 H 1.09001 * 113.70864 * 88.80405 * 18 17 16 39 39 H 1.09001 * 113.56434 * 268.62604 * 19 16 15 40 40 H 1.09001 * 113.56203 * 39.36092 * 19 16 15 41 41 H 1.08998 * 110.71764 * 41.83547 * 22 20 12 42 42 H 1.09004 * 110.71977 * 165.10220 * 22 20 12 43 43 H 1.09002 * 110.25386 * 117.80859 * 26 23 22 44 44 H 1.09005 * 110.24807 * 239.73415 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0868 -1.2042 0.0853 9 7 1.3299 -2.3855 -0.1098 10 6 0.1500 -2.3853 -0.9416 11 6 -0.2502 -3.7508 -1.4706 12 7 0.1846 -4.8159 -0.5632 13 6 -0.6776 -5.7602 -0.1376 14 8 -0.2752 -6.6962 0.5265 15 6 -2.1056 -5.6588 -0.4761 16 6 -2.9391 -6.6406 -0.1442 17 6 -2.8303 -7.9809 0.5516 18 6 -4.0724 -8.4157 -0.2363 19 6 -4.4190 -6.9196 -0.2992 20 6 1.5897 -4.8269 -0.1365 21 1 2.2481 -4.9250 -0.9997 22 6 1.8140 -5.9970 0.8481 23 16 1.0776 -5.3710 2.4042 24 8 -0.2909 -5.7495 2.4628 25 8 1.9441 -5.6718 3.4895 26 6 1.1969 -3.5901 2.0095 27 6 1.8654 -3.5211 0.6224 28 1 2.9407 -3.3888 0.7420 29 1 -0.4850 0.8400 0.0004 30 1 -0.6807 -1.9827 -0.3621 31 1 0.3272 -1.7267 -1.7919 32 1 0.2079 -3.9043 -2.4476 33 1 -1.3345 -3.7904 -1.5748 34 1 -2.4771 -4.7870 -0.9942 35 1 -1.9314 -8.5375 0.2870 36 1 -2.9937 -7.9274 1.6280 37 1 -4.7801 -9.0075 0.3442 38 1 -3.8437 -8.8561 -1.2068 39 1 -5.0180 -6.5753 0.5439 40 1 -4.8231 -6.6061 -1.2617 41 1 1.2937 -6.8924 0.5080 42 1 2.8784 -6.1938 0.9771 43 1 0.2028 -3.1445 1.9719 44 1 1.8108 -3.0795 2.7516 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094623335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:49 Heat of formation + Delta-G solvation = 21.583025 kcal Electronic energy + Delta-G solvation = -29868.562339 eV Core-core repulsion = 25917.622673 eV Total energy + Delta-G solvation = -3950.939666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.50860 -38.63862 -37.33777 -36.22252 -35.27314 -34.31231 -33.84099 -31.21271 -30.64015 -28.48715 -27.93280 -25.71220 -25.14233 -23.84275 -23.18373 -22.14739 -20.56540 -18.79594 -18.27397 -17.76403 -17.22888 -16.61251 -16.43329 -16.02698 -15.43469 -15.36022 -15.06783 -14.79906 -14.51324 -14.16369 -13.81916 -13.76284 -13.59486 -13.47042 -12.92614 -12.46699 -12.39696 -12.34675 -11.95307 -11.86115 -11.55824 -11.41193 -11.34379 -11.28302 -11.11569 -10.93705 -10.92227 -10.63323 -10.54286 -10.39272 -10.30269 -10.23588 -9.89016 -9.62409 -9.03084 -8.72393 -8.60037 -8.29815 -6.86941 -5.89985 -3.58744 0.74895 1.56901 3.12411 3.23424 3.27357 3.32240 3.33117 3.55783 4.15357 4.28609 4.39149 4.52380 4.68742 4.77681 4.79722 5.04752 5.10054 5.15625 5.24350 5.27732 5.35910 5.52089 5.53843 5.58872 5.69422 5.72102 5.74181 5.78267 5.84926 5.93194 6.04676 6.09625 6.17688 6.26716 6.33249 6.39142 6.61701 6.76550 6.82378 7.11326 7.53431 7.64622 7.73125 8.29746 8.53115 9.05558 9.62433 10.01798 11.04530 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.004620 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.307214 B = 6059.268011 C = 7265.599788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.019 3.981 3 Si 0.908 3.092 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.279 4.279 8 H 0.068 0.932 9 N -0.570 5.570 10 C 0.159 3.841 11 C 0.089 3.911 12 N -0.605 5.605 13 C 0.559 3.441 14 O -0.528 6.528 15 C -0.190 4.190 16 C -0.062 4.062 17 C -0.099 4.099 18 C -0.145 4.145 19 C -0.108 4.108 20 C 0.145 3.855 21 H 0.104 0.896 22 C -0.620 4.620 23 S 2.376 3.624 24 O -0.925 6.925 25 O -0.971 6.971 26 C -0.597 4.597 27 C 0.186 3.814 28 H 0.085 0.915 29 H 0.257 0.743 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.200 0.800 42 H 0.120 0.880 43 H 0.134 0.866 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 -11.657 -4.133 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.737 3.263 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.409 4.409 8 H 0.086 0.914 9 N -0.291 5.291 10 C 0.033 3.967 11 C -0.034 4.034 12 N -0.338 5.338 13 C 0.352 3.648 14 O -0.410 6.410 15 C -0.210 4.210 16 C -0.064 4.064 17 C -0.135 4.135 18 C -0.182 4.182 19 C -0.145 4.145 20 C 0.040 3.960 21 H 0.122 0.878 22 C -0.749 4.749 23 S 2.560 3.440 24 O -0.921 6.921 25 O -0.968 6.968 26 C -0.731 4.731 27 C 0.075 3.925 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.152 0.848 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.216 0.784 42 H 0.138 0.862 43 H 0.152 0.848 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.017 -12.480 -3.019 13.785 hybrid contribution 0.753 1.815 -0.670 2.076 sum -4.264 -10.665 -3.689 12.064 Atomic orbital electron populations 1.69938 1.05332 1.25925 1.52848 1.25346 0.95448 0.98619 0.98764 0.86305 0.78912 0.82806 0.78314 1.20739 1.21472 1.20620 1.19210 0.90493 0.83334 1.47885 0.91396 1.42792 1.29468 1.06294 1.50526 1.20536 0.91313 0.89964 0.94876 1.22267 1.00351 0.88664 0.92132 1.47700 1.09119 1.28117 1.48865 1.18378 0.86417 0.81431 0.78568 1.90380 1.76686 1.34214 1.39718 1.21610 0.92524 0.99204 1.07658 1.23337 0.95931 0.94258 0.92826 1.22144 0.98290 0.93215 0.99878 1.22756 0.98726 0.95713 1.01047 1.22333 0.93185 0.96193 1.02762 1.21941 0.83091 0.92924 0.98064 0.87789 1.31924 1.12695 1.11304 1.18973 1.09334 0.76494 0.80399 0.77734 1.93619 1.31301 1.80973 1.86248 1.93511 1.68293 1.84000 1.50974 1.31291 1.11534 1.21049 1.09192 1.20842 0.97836 0.87542 0.86327 0.89764 0.93221 0.91626 0.92513 0.92354 0.89734 0.84773 0.89941 0.88220 0.90742 0.90046 0.88262 0.90655 0.78368 0.86192 0.84753 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.50 10.63 55.49 0.59 -22.91 16 2 C 0.02 0.47 5.15 -17.43 -0.09 0.38 16 3 Si 0.91 20.14 29.56 -169.99 -5.02 15.11 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.28 -6.84 9.16 -15.06 -0.14 -6.98 16 8 H 0.07 1.63 7.75 -52.49 -0.41 1.22 16 9 N -0.57 -12.44 2.70 -167.90 -0.45 -12.89 16 10 C 0.16 3.27 4.93 -5.78 -0.03 3.24 16 11 C 0.09 1.42 6.44 -4.63 -0.03 1.39 16 12 N -0.61 -9.94 2.79 -166.68 -0.47 -10.40 16 13 C 0.56 9.43 6.18 -12.66 -0.08 9.35 16 14 O -0.53 -9.47 7.95 -19.74 -0.16 -9.63 16 15 C -0.19 -2.81 9.34 -37.81 -0.35 -3.17 16 16 C -0.06 -0.83 6.92 -100.49 -0.70 -1.53 16 17 C -0.10 -1.25 6.95 -27.56 -0.19 -1.45 16 18 C -0.15 -1.37 8.17 -26.18 -0.21 -1.59 16 19 C -0.11 -1.08 7.96 -27.39 -0.22 -1.30 16 20 C 0.15 2.33 3.53 -66.65 -0.24 2.10 16 21 H 0.10 1.51 8.14 -51.92 -0.42 1.09 16 22 C -0.62 -9.46 6.15 37.98 0.23 -9.23 16 23 S 2.38 43.24 5.64 -107.50 -0.61 42.63 16 24 O -0.92 -19.09 14.21 -67.51 -0.96 -20.05 16 25 O -0.97 -19.98 18.14 -57.71 -1.05 -21.03 16 26 C -0.60 -11.24 6.81 37.75 0.26 -10.99 16 27 C 0.19 3.47 2.82 -67.69 -0.19 3.28 16 28 H 0.08 1.48 7.82 -51.93 -0.41 1.08 16 29 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.07 1.55 6.61 -51.93 -0.34 1.20 16 31 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.17 5.33 -51.93 -0.28 0.90 16 34 H 0.13 1.75 5.93 -52.48 -0.31 1.44 16 35 H 0.08 1.13 7.59 -51.93 -0.39 0.73 16 36 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.20 3.13 4.90 -56.97 -0.28 2.85 16 42 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.13 2.82 8.04 -51.93 -0.42 2.40 16 44 H 0.13 2.29 8.14 -51.93 -0.42 1.87 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -31.60 346.64 -11.04 -42.64 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.17 Total: 7.79 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -1.97 Total: -16.48 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.33 Total: -46.20 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -2.16 Total: -50.71 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 43.24 SS G_CDS: -0.61 Total: 42.63 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.60 -11.04 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094623335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.222 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds