Wall clock time and date at job start Tue Mar 31 2020 23:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00382 * 2 1 4 4 H 1.48498 * 109.47093 * 270.00352 * 3 2 1 5 5 H 1.48510 * 109.47148 * 29.99727 * 3 2 1 6 6 H 1.48497 * 109.47395 * 150.00153 * 3 2 1 7 7 C 1.37884 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99840 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.64546 * 298.31720 * 9 7 2 11 11 C 1.55159 * 110.87006 * 175.06535 * 9 7 2 12 12 C 1.54909 * 101.57990 * 206.06403 * 11 9 7 13 13 N 1.47743 * 104.83995 * 37.09908 * 12 11 9 14 14 C 1.34780 * 125.81887 * 155.82587 * 13 12 11 15 15 O 1.21370 * 119.99537 * 179.90806 * 14 13 12 16 16 C 1.49324 * 120.00526 * 359.90689 * 14 13 12 17 17 O 1.21407 * 119.99809 * 0.02562 * 16 14 13 18 18 N 1.34771 * 120.00390 * 180.02562 * 16 14 13 19 19 C 1.40482 * 120.00428 * 179.97438 * 18 16 14 20 20 C 1.40341 * 126.11126 * 359.68750 * 19 18 16 21 21 N 1.30821 * 108.20605 * 179.85163 * 20 19 18 22 22 N 1.40048 * 108.36886 * 0.40991 * 21 20 19 23 23 C 1.46496 * 125.99796 * 179.71668 * 22 21 20 24 24 C 1.53004 * 109.47073 * 305.02392 * 23 22 21 25 25 F 1.39903 * 109.47261 * 179.97438 * 24 23 22 26 26 C 1.35226 * 108.01002 * 359.73688 * 22 21 20 27 27 C 1.47020 * 108.53125 * 335.74644 * 13 12 11 28 28 H 0.96996 * 119.99953 * 0.02562 * 1 2 3 29 29 H 0.96701 * 113.99408 * 61.68794 * 10 9 7 30 30 H 1.08994 * 111.00854 * 324.14450 * 11 9 7 31 31 H 1.09006 * 111.00035 * 87.99467 * 11 9 7 32 32 H 1.09003 * 110.36363 * 155.85234 * 12 11 9 33 33 H 1.08996 * 110.37070 * 278.06073 * 12 11 9 34 34 H 0.97005 * 119.99666 * 0.02562 * 18 16 14 35 35 H 1.07998 * 125.89292 * 359.97438 * 20 19 18 36 36 H 1.09000 * 109.47068 * 65.01841 * 23 22 21 37 37 H 1.08995 * 109.47639 * 185.02036 * 23 22 21 38 38 H 1.08992 * 109.46905 * 299.99907 * 24 23 22 39 39 H 1.09003 * 109.47058 * 59.99671 * 24 23 22 40 40 H 1.08002 * 126.17964 * 179.97438 * 26 22 21 41 41 H 1.09002 * 109.88367 * 241.68734 * 27 13 12 42 42 H 1.09000 * 109.88319 * 120.67352 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4502 -2.6186 1.1770 11 6 2.2254 -3.7001 -0.1259 12 6 1.3148 -4.7731 -0.7733 13 7 0.4602 -4.0244 -1.7177 14 6 -0.1465 -4.5350 -2.8075 15 8 -0.8293 -3.8209 -3.5123 16 6 0.0214 -5.9792 -3.1478 17 8 0.7041 -6.6937 -2.4424 18 7 -0.5848 -6.4897 -4.2378 19 6 -0.4264 -7.8483 -4.5582 20 6 0.3345 -8.7841 -3.8407 21 7 0.2355 -9.9405 -4.4444 22 7 -0.5821 -9.7820 -5.5703 23 6 -0.9449 -10.8317 -6.5256 24 6 0.3261 -11.4787 -7.0794 25 9 -0.0203 -12.4816 -7.9913 26 6 -0.9776 -8.4898 -5.6213 27 6 0.3803 -2.6268 -1.2683 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2279 -1.9344 1.2625 30 1 3.0650 -3.4558 -0.7766 31 1 2.5745 -4.0240 0.8547 32 1 1.9161 -5.5080 -1.3087 33 1 0.7064 -5.2632 -0.0132 34 1 -1.1300 -5.9188 -4.8016 35 1 0.9022 -8.5844 -2.9439 36 1 -1.5481 -11.5877 -6.0229 37 1 -1.5172 -10.3958 -7.3445 38 1 0.9293 -10.7227 -7.5820 39 1 0.8984 -11.9147 -6.2605 40 1 -1.6160 -8.0476 -6.3718 41 1 -0.6534 -2.3708 -1.0354 42 1 0.7596 -1.9648 -2.0467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118874541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:53 Heat of formation + Delta-G solvation = -71.791251 kcal Electronic energy + Delta-G solvation = -29026.247735 eV Core-core repulsion = 24537.338631 eV Total energy + Delta-G solvation = -4488.909104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.23159 -41.74264 -40.31914 -38.53892 -37.29938 -35.44231 -34.33156 -33.80193 -32.27489 -30.38759 -30.22102 -28.71364 -27.92185 -25.94457 -24.31710 -23.95610 -22.39052 -21.66454 -20.87512 -19.73250 -19.34546 -17.97513 -17.36195 -17.20502 -16.97146 -16.62230 -16.16927 -16.00618 -15.69458 -15.42770 -15.25814 -14.81506 -14.64183 -14.32447 -14.22777 -13.96386 -13.39085 -13.17408 -13.05925 -12.98495 -12.89874 -12.36784 -12.11179 -11.79216 -11.56820 -11.56075 -11.11784 -11.06915 -11.05201 -11.00924 -10.81002 -10.61954 -10.52215 -10.20859 -9.76392 -9.38950 -9.20416 -8.71278 -8.38310 -8.14663 -7.98429 -6.33327 -4.41742 1.24571 1.72754 1.87461 2.55456 2.62717 3.18706 3.26516 3.29564 3.52873 3.70355 3.80439 4.05081 4.23798 4.34854 4.44555 4.53606 4.56510 4.73162 4.90542 4.95126 5.16691 5.28731 5.33170 5.45829 5.77422 5.78465 5.88090 6.01492 6.25754 6.47099 6.49035 6.60176 6.70664 6.75512 6.79510 7.03556 7.16031 7.27556 7.35285 7.68196 7.76051 7.92126 7.98359 8.31459 8.62371 9.24706 9.33650 10.74532 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.032445 B = 0.002021 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.799789 B =13848.151061 C =14113.271088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.121 4.121 12 C 0.098 3.902 13 N -0.573 5.573 14 C 0.511 3.489 15 O -0.537 6.537 16 C 0.514 3.486 17 O -0.506 6.506 18 N -0.620 5.620 19 C 0.006 3.994 20 C 0.061 3.939 21 N -0.286 5.286 22 N -0.374 5.374 23 C 0.113 3.887 24 C 0.051 3.949 25 F -0.209 7.209 26 C 0.025 3.975 27 C 0.100 3.900 28 H 0.271 0.729 29 H 0.382 0.618 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.422 0.578 35 H 0.211 0.789 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.181 0.819 41 H 0.072 0.928 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 -17.653 -12.535 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.159 4.159 12 C -0.024 4.024 13 N -0.305 5.305 14 C 0.293 3.707 15 O -0.416 6.416 16 C 0.297 3.703 17 O -0.380 6.380 18 N -0.267 5.267 19 C -0.099 4.099 20 C -0.126 4.126 21 N -0.108 5.108 22 N -0.159 5.159 23 C -0.009 4.009 24 C -0.005 4.005 25 F -0.190 7.190 26 C -0.123 4.123 27 C -0.021 4.021 28 H 0.081 0.919 29 H 0.232 0.768 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.259 0.741 35 H 0.227 0.773 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.198 0.802 41 H 0.090 0.910 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.805 -19.490 -12.418 23.180 hybrid contribution -0.692 2.614 -0.578 2.765 sum -2.497 -16.876 -12.996 21.446 Atomic orbital electron populations 1.69687 1.05994 1.28009 1.49678 1.25087 0.95081 0.99829 0.93343 0.86383 0.79831 0.82311 0.78285 1.20426 1.20986 1.19649 1.21503 0.93757 0.89938 1.52264 0.91380 1.19528 0.86503 0.92334 0.80925 1.86135 1.51790 1.56546 1.44673 1.22818 0.97448 0.95047 1.00546 1.22725 0.92911 0.94986 0.91810 1.48773 1.45355 1.13501 1.22824 1.19244 0.82240 0.86986 0.82264 1.90748 1.40056 1.60524 1.50267 1.20471 0.79877 0.89345 0.80619 1.90593 1.37568 1.60512 1.49308 1.42464 1.49757 1.07255 1.27190 1.17753 1.07136 0.85692 0.99309 1.24639 0.99084 0.88015 1.00911 1.77395 1.13070 1.22797 0.97527 1.47907 1.39813 1.06926 1.21301 1.22137 0.97552 0.90080 0.91168 1.22197 0.96870 0.89237 0.92153 1.92799 1.93777 1.63173 1.69241 1.21819 1.04228 0.85240 1.00964 1.23268 1.02353 0.77179 0.99276 0.91949 0.76775 0.90405 0.90235 0.89416 0.91141 0.74058 0.77304 0.88495 0.87409 0.89990 0.88988 0.80218 0.90952 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.08 10.96 55.43 0.61 -22.47 16 2 C 0.07 1.77 5.28 -17.82 -0.09 1.68 16 3 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -13.62 8.13 -34.44 -0.28 -13.90 16 8 H 0.07 1.70 7.78 -52.49 -0.41 1.30 16 9 C 0.25 5.81 0.85 -89.94 -0.08 5.73 16 10 O -0.58 -14.25 13.07 -35.23 -0.46 -14.71 16 11 C -0.12 -2.38 6.23 -24.58 -0.15 -2.53 16 12 C 0.10 1.78 6.08 -2.35 -0.01 1.77 16 13 N -0.57 -11.49 3.34 -170.82 -0.57 -12.06 16 14 C 0.51 9.55 7.91 -11.64 -0.09 9.45 16 15 O -0.54 -10.98 16.80 5.48 0.09 -10.88 16 16 C 0.51 7.96 7.82 -11.65 -0.09 7.87 16 17 O -0.51 -8.12 10.95 5.45 0.06 -8.06 16 18 N -0.62 -7.62 5.45 -10.48 -0.06 -7.68 16 19 C 0.01 0.07 6.90 -83.96 -0.58 -0.51 16 20 C 0.06 0.76 10.84 -17.19 -0.19 0.58 16 21 N -0.29 -3.34 12.40 30.72 0.38 -2.96 16 22 N -0.37 -3.26 3.68 -61.16 -0.23 -3.48 16 23 C 0.11 0.60 6.96 -4.04 -0.03 0.57 16 24 C 0.05 0.30 7.74 37.16 0.29 0.58 16 25 F -0.21 -1.55 17.36 2.25 0.04 -1.51 16 26 C 0.02 0.21 11.49 -16.91 -0.19 0.01 16 27 C 0.10 2.31 5.23 -3.06 -0.02 2.30 16 28 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.38 9.50 7.45 45.56 0.34 9.84 16 30 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.09 1.47 6.17 -51.93 -0.32 1.15 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.42 4.45 8.29 -40.82 -0.34 4.11 16 35 H 0.21 2.77 5.92 -52.49 -0.31 2.46 16 36 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.11 0.30 8.07 -51.93 -0.42 -0.12 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.07 1.81 7.91 -51.93 -0.41 1.39 16 42 H 0.07 1.84 7.81 -51.93 -0.41 1.44 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -29.85 360.87 -5.60 -35.44 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -4.36 Total: 14.35 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -1.52 Total: 13.61 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.14 Total: -48.65 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.31 Total: -33.65 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.85 -5.60 -35.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118874541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.348 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds