Wall clock time and date at job start Tue Mar 31 2020 23:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00382 * 2 1 4 4 H 1.48498 * 109.47093 * 270.00352 * 3 2 1 5 5 H 1.48510 * 109.47148 * 29.99727 * 3 2 1 6 6 H 1.48497 * 109.47395 * 150.00153 * 3 2 1 7 7 C 1.37884 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99840 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.64546 * 298.31720 * 9 7 2 11 11 C 1.55159 * 110.87006 * 175.06535 * 9 7 2 12 12 C 1.54909 * 101.57990 * 206.06403 * 11 9 7 13 13 N 1.47743 * 104.83995 * 37.09908 * 12 11 9 14 14 C 1.34780 * 125.81887 * 155.82587 * 13 12 11 15 15 O 1.21370 * 119.99537 * 179.90806 * 14 13 12 16 16 C 1.49324 * 120.00526 * 359.90689 * 14 13 12 17 17 O 1.21407 * 119.99809 * 0.02562 * 16 14 13 18 18 N 1.34771 * 120.00390 * 180.02562 * 16 14 13 19 19 C 1.40482 * 120.00428 * 179.97438 * 18 16 14 20 20 C 1.40341 * 126.11126 * 359.68750 * 19 18 16 21 21 N 1.30821 * 108.20605 * 179.85163 * 20 19 18 22 22 N 1.40048 * 108.36886 * 0.40991 * 21 20 19 23 23 C 1.46496 * 125.99796 * 179.71668 * 22 21 20 24 24 C 1.53004 * 109.47073 * 305.02392 * 23 22 21 25 25 F 1.39903 * 109.47261 * 179.97438 * 24 23 22 26 26 C 1.35226 * 108.01002 * 359.73688 * 22 21 20 27 27 C 1.47020 * 108.53125 * 335.74644 * 13 12 11 28 28 H 0.96996 * 119.99953 * 0.02562 * 1 2 3 29 29 H 0.96701 * 113.99408 * 61.68794 * 10 9 7 30 30 H 1.08994 * 111.00854 * 324.14450 * 11 9 7 31 31 H 1.09006 * 111.00035 * 87.99467 * 11 9 7 32 32 H 1.09003 * 110.36363 * 155.85234 * 12 11 9 33 33 H 1.08996 * 110.37070 * 278.06073 * 12 11 9 34 34 H 0.97005 * 119.99666 * 0.02562 * 18 16 14 35 35 H 1.07998 * 125.89292 * 359.97438 * 20 19 18 36 36 H 1.09000 * 109.47068 * 65.01841 * 23 22 21 37 37 H 1.08995 * 109.47639 * 185.02036 * 23 22 21 38 38 H 1.08992 * 109.46905 * 299.99907 * 24 23 22 39 39 H 1.09003 * 109.47058 * 59.99671 * 24 23 22 40 40 H 1.08002 * 126.17964 * 179.97438 * 26 22 21 41 41 H 1.09002 * 109.88367 * 241.68734 * 27 13 12 42 42 H 1.09000 * 109.88319 * 120.67352 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4502 -2.6186 1.1770 11 6 2.2254 -3.7001 -0.1259 12 6 1.3148 -4.7731 -0.7733 13 7 0.4602 -4.0244 -1.7177 14 6 -0.1465 -4.5350 -2.8075 15 8 -0.8293 -3.8209 -3.5123 16 6 0.0214 -5.9792 -3.1478 17 8 0.7041 -6.6937 -2.4424 18 7 -0.5848 -6.4897 -4.2378 19 6 -0.4264 -7.8483 -4.5582 20 6 0.3345 -8.7841 -3.8407 21 7 0.2355 -9.9405 -4.4444 22 7 -0.5821 -9.7820 -5.5703 23 6 -0.9449 -10.8317 -6.5256 24 6 0.3261 -11.4787 -7.0794 25 9 -0.0203 -12.4816 -7.9913 26 6 -0.9776 -8.4898 -5.6213 27 6 0.3803 -2.6268 -1.2683 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2279 -1.9344 1.2625 30 1 3.0650 -3.4558 -0.7766 31 1 2.5745 -4.0240 0.8547 32 1 1.9161 -5.5080 -1.3087 33 1 0.7064 -5.2632 -0.0132 34 1 -1.1300 -5.9188 -4.8016 35 1 0.9022 -8.5844 -2.9439 36 1 -1.5481 -11.5877 -6.0229 37 1 -1.5172 -10.3958 -7.3445 38 1 0.9293 -10.7227 -7.5820 39 1 0.8984 -11.9147 -6.2605 40 1 -1.6160 -8.0476 -6.3718 41 1 -0.6534 -2.3708 -1.0354 42 1 0.7596 -1.9648 -2.0467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118874541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:52 Heat of formation + Delta-G solvation = -94.517140 kcal Electronic energy + Delta-G solvation = -29027.233204 eV Core-core repulsion = 24537.338631 eV Total energy + Delta-G solvation = -4489.894572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.75401 -42.60887 -41.62062 -39.96557 -38.91211 -36.60474 -35.80047 -34.60979 -34.22807 -31.88386 -31.12734 -29.79965 -29.39725 -27.59757 -25.61951 -24.76222 -23.81408 -22.45288 -21.90408 -21.42355 -20.59085 -19.12124 -18.87915 -18.55046 -17.82253 -17.45705 -17.37255 -17.13401 -17.00765 -16.45858 -16.32654 -16.19761 -15.78494 -15.72722 -15.26664 -14.87811 -14.76615 -14.73650 -14.57673 -14.06326 -13.93939 -13.77732 -13.51129 -13.39527 -12.85554 -12.68163 -12.58151 -12.48996 -12.33987 -12.26732 -12.17460 -12.05353 -11.89467 -11.68072 -11.17570 -10.74011 -10.52646 -10.50946 -10.28784 -9.75822 -8.88476 -8.26015 -6.41292 0.13741 0.79876 1.03594 1.42632 1.45407 1.48137 1.55109 1.63687 2.23873 2.37660 2.49825 3.00590 3.23727 3.25697 3.65298 3.78812 3.81047 3.97219 4.01102 4.05945 4.16188 4.21010 4.30396 4.37229 4.46891 4.61777 4.64231 4.71176 4.81192 4.94083 5.00115 5.11615 5.13555 5.33811 5.46275 5.61957 5.73902 5.89893 5.97489 6.07356 6.35265 6.49333 6.63931 6.69213 6.89030 7.28277 7.36107 8.80306 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.032445 B = 0.002021 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.799789 B =13848.151061 C =14113.271088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.067 0.933 9 C 0.233 3.767 10 O -0.587 6.587 11 C -0.115 4.115 12 C 0.108 3.892 13 N -0.583 5.583 14 C 0.509 3.491 15 O -0.558 6.558 16 C 0.519 3.481 17 O -0.515 6.515 18 N -0.599 5.599 19 C -0.031 4.031 20 C 0.045 3.955 21 N -0.310 5.310 22 N -0.366 5.366 23 C 0.108 3.892 24 C 0.054 3.946 25 F -0.217 7.217 26 C 0.060 3.940 27 C 0.119 3.881 28 H 0.271 0.729 29 H 0.376 0.624 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.431 0.569 35 H 0.195 0.805 36 H 0.104 0.896 37 H 0.144 0.856 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.227 0.773 41 H 0.045 0.955 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.647 -18.901 -14.400 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.174 4.174 3 Si 0.789 3.211 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.594 4.594 8 H 0.085 0.915 9 C 0.193 3.807 10 O -0.395 6.395 11 C -0.153 4.153 12 C -0.013 4.013 13 N -0.315 5.315 14 C 0.293 3.707 15 O -0.438 6.438 16 C 0.300 3.700 17 O -0.390 6.390 18 N -0.246 5.246 19 C -0.135 4.135 20 C -0.142 4.142 21 N -0.132 5.132 22 N -0.150 5.150 23 C -0.013 4.013 24 C -0.002 4.002 25 F -0.198 7.198 26 C -0.088 4.088 27 C -0.004 4.004 28 H 0.080 0.920 29 H 0.225 0.775 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.270 0.730 35 H 0.211 0.789 36 H 0.122 0.878 37 H 0.162 0.838 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.243 0.757 41 H 0.063 0.937 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.024 -20.801 -14.312 25.330 hybrid contribution -0.699 2.876 -0.133 2.963 sum -2.723 -17.925 -14.445 23.181 Atomic orbital electron populations 1.69784 1.06965 1.28549 1.49977 1.25785 0.95836 1.02663 0.93072 0.85473 0.78754 0.78785 0.78136 1.20298 1.20785 1.19220 1.21796 0.93953 0.91134 1.52530 0.91462 1.19728 0.87048 0.93457 0.80514 1.86126 1.51748 1.56269 1.45332 1.22821 0.97119 0.93804 1.01542 1.22719 0.92502 0.94504 0.91579 1.48770 1.46378 1.12446 1.23863 1.19882 0.81072 0.88533 0.81252 1.90722 1.40678 1.61669 1.50745 1.19693 0.80920 0.87506 0.81859 1.90599 1.38456 1.59980 1.50010 1.42188 1.48574 1.07954 1.25852 1.17900 1.09462 0.84980 1.01167 1.24485 0.99734 0.88894 1.01070 1.77363 1.14413 1.22546 0.98882 1.48254 1.38334 1.07836 1.20584 1.22465 0.97532 0.89823 0.91462 1.22160 0.97212 0.89065 0.91717 1.92785 1.93859 1.63664 1.69520 1.22488 1.02017 0.84462 0.99877 1.22748 1.00349 0.78776 0.98493 0.91975 0.77455 0.89596 0.89160 0.87446 0.91107 0.72989 0.78858 0.87769 0.83810 0.89285 0.90073 0.75667 0.93671 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.17 10.96 21.45 0.24 -47.93 16 2 C 0.03 1.41 5.28 84.66 0.45 1.86 16 3 Si 0.96 41.17 29.54 68.60 2.03 43.19 16 4 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.56 -28.57 8.13 25.60 0.21 -28.37 16 8 H 0.07 3.38 7.78 -2.91 -0.02 3.36 16 9 C 0.23 11.11 0.85 -10.35 -0.01 11.10 16 10 O -0.59 -29.28 13.07 -148.98 -1.95 -31.23 16 11 C -0.12 -4.49 6.23 31.99 0.20 -4.30 16 12 C 0.11 3.91 6.08 86.79 0.53 4.43 16 13 N -0.58 -23.66 3.34 -812.69 -2.71 -26.37 16 14 C 0.51 19.08 7.91 87.23 0.69 19.77 16 15 O -0.56 -23.00 16.80 -3.31 -0.06 -23.05 16 16 C 0.52 15.70 7.82 87.23 0.68 16.38 16 17 O -0.51 -16.25 10.95 -3.43 -0.04 -16.29 16 18 N -0.60 -13.74 5.45 -305.42 -1.67 -15.41 16 19 C -0.03 -0.64 6.90 37.71 0.26 -0.38 16 20 C 0.04 1.08 10.84 85.36 0.93 2.01 16 21 N -0.31 -6.78 12.40 -56.72 -0.70 -7.48 16 22 N -0.37 -5.21 3.68 -347.40 -1.28 -6.49 16 23 C 0.11 0.75 6.96 86.38 0.60 1.35 16 24 C 0.05 0.50 7.74 71.98 0.56 1.06 16 25 F -0.22 -2.75 17.36 44.97 0.78 -1.97 16 26 C 0.06 0.77 11.49 83.61 0.96 1.73 16 27 C 0.12 5.67 5.23 86.73 0.45 6.12 16 28 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 29 H 0.38 19.36 7.45 -74.06 -0.55 18.81 16 30 H 0.09 3.19 8.04 -2.39 -0.02 3.17 16 31 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 32 H 0.11 3.48 6.17 -2.39 -0.01 3.47 16 33 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.43 8.19 8.29 -92.70 -0.77 7.42 16 35 H 0.19 5.20 5.92 -2.91 -0.02 5.18 16 36 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.14 0.04 8.07 -2.39 -0.02 0.02 16 38 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.23 0.70 8.06 -2.91 -0.02 0.68 16 41 H 0.04 2.36 7.91 -2.39 -0.02 2.34 16 42 H 0.05 2.49 7.81 -2.39 -0.02 2.47 16 Total: -1.00 -65.97 360.87 0.92 -65.04 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.22 Total: 35.21 kcal Atomic # 6 Polarization: 26.27 SS G_CDS: 6.50 Total: 32.78 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -6.13 Total: -103.68 kcal Atomic # 8 Polarization: -68.53 SS G_CDS: -2.04 Total: -70.57 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -65.97 0.92 -65.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118874541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.474 kcal (2) G-P(sol) polarization free energy of solvation -65.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds