Wall clock time and date at job start Tue Mar 31 2020 23:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53008 * 109.47015 * 176.88513 * 3 2 1 5 5 N 1.46501 * 109.47258 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99577 * 263.58277 * 5 4 3 7 7 C 1.50696 * 109.47070 * 270.00227 * 6 5 4 8 8 H 1.08001 * 119.99801 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00063 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00114 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99948 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47218 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47094 * 119.99979 * 11 9 7 14 14 H 1.48508 * 109.47066 * 239.99776 * 11 9 7 15 15 C 1.34773 * 120.00167 * 83.58240 * 5 4 3 16 16 O 1.21667 * 119.99807 * 184.08222 * 15 5 4 17 17 C 1.46715 * 120.00045 * 4.08078 * 15 5 4 18 18 N 1.29760 * 126.54794 * 353.85250 * 17 15 5 19 19 N 1.39165 * 112.70022 * 180.02562 * 18 17 15 20 20 C 1.40005 * 124.34397 * 180.02562 * 19 18 17 21 21 C 1.38884 * 120.06593 * 179.69945 * 20 19 18 22 22 C 1.38102 * 119.92430 * 179.74062 * 21 20 19 23 23 C 1.38291 * 120.07408 * 0.51185 * 22 21 20 24 24 C 1.38284 * 120.14172 * 359.76396 * 23 22 21 25 25 C 1.38111 * 120.07164 * 359.97438 * 24 23 22 26 26 C 1.35193 * 111.33975 * 0.09025 * 19 18 17 27 27 O 1.21249 * 127.46617 * 179.97438 * 26 19 18 28 28 C 1.51447 * 126.54719 * 173.89688 * 17 15 5 29 29 H 1.09006 * 109.47426 * 56.88766 * 3 2 1 30 30 H 1.09002 * 109.47759 * 296.88436 * 3 2 1 31 31 H 1.08992 * 109.46992 * 59.99831 * 4 3 2 32 32 H 1.08999 * 109.46722 * 299.99980 * 4 3 2 33 33 H 1.09001 * 109.47105 * 29.99931 * 6 5 4 34 34 H 1.08998 * 109.46787 * 149.99825 * 6 5 4 35 35 H 0.97001 * 120.00164 * 180.02562 * 10 9 7 36 36 H 1.08008 * 120.03858 * 359.97418 * 21 20 19 37 37 H 1.08002 * 119.96670 * 180.25678 * 22 21 20 38 38 H 1.07998 * 119.92726 * 179.74862 * 23 22 21 39 39 H 1.07996 * 119.96987 * 180.02562 * 24 23 22 40 40 H 1.07995 * 120.03924 * 180.02562 * 25 24 23 41 41 H 1.09000 * 110.57909 * 298.51830 * 28 17 15 42 42 H 1.09008 * 110.57942 * 61.26168 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.4413 -0.0784 5 7 4.5823 1.4420 -0.0790 6 6 5.3151 1.6523 1.1720 7 6 5.5656 3.1256 1.3659 8 1 5.2144 3.8344 0.6305 9 6 6.2440 3.5686 2.4815 10 7 6.6721 2.7055 3.3766 11 14 6.5551 5.3948 2.7214 12 1 5.9773 6.1495 1.5805 13 1 5.9183 5.8435 3.9856 14 1 8.0177 5.6432 2.7886 15 6 5.2558 1.2492 -1.2304 16 8 6.4702 1.1756 -1.2197 17 6 4.5246 1.1281 -2.4965 18 7 3.2363 1.0756 -2.6429 19 7 2.8515 0.9598 -3.9753 20 6 1.5228 0.8842 -4.4099 21 6 1.2391 0.7762 -5.7652 22 6 -0.0725 0.6964 -6.1903 23 6 -1.1031 0.7346 -5.2690 24 6 -0.8242 0.8478 -3.9193 25 6 0.4855 0.9226 -3.4872 26 6 3.9250 0.9283 -4.7964 27 8 3.9264 0.8335 -6.0052 28 6 5.1292 1.0395 -3.8822 29 1 2.9716 -0.5606 -0.8608 30 1 2.9716 -0.4639 0.9166 31 1 2.7537 2.0025 0.7823 32 1 2.7537 1.9058 -0.9950 33 1 4.7265 1.2709 2.0064 34 1 6.2678 1.1244 1.1281 35 1 7.1491 3.0172 4.1617 36 1 2.0434 0.7508 -6.4856 37 1 -0.2937 0.6082 -7.2437 38 1 -2.1280 0.6761 -5.6044 39 1 -1.6312 0.8770 -3.2022 40 1 0.7027 1.0107 -2.4330 41 1 5.7007 1.9395 -4.1092 42 1 5.7597 0.1545 -3.9693 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147883878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:55 Heat of formation + Delta-G solvation = 66.868701 kcal Electronic energy + Delta-G solvation = -29079.242778 eV Core-core repulsion = 25027.115646 eV Total energy + Delta-G solvation = -4052.127132 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.93985 -39.63634 -38.86202 -37.70609 -36.91729 -35.49080 -33.87905 -32.94057 -31.15307 -30.98457 -29.78809 -29.44388 -27.57792 -24.94098 -24.03882 -23.54058 -22.82051 -21.53809 -20.80586 -18.82649 -18.20463 -17.73032 -16.97597 -16.80866 -16.60780 -16.38990 -15.86405 -15.47397 -14.97994 -14.81630 -14.64738 -14.51765 -14.37256 -14.13073 -13.69900 -13.61993 -13.49513 -13.30960 -12.96448 -12.57566 -12.55398 -12.40290 -12.22953 -12.20530 -11.79153 -11.49118 -11.39225 -11.25809 -11.06856 -10.83481 -10.67609 -10.33127 -10.17349 -10.16003 -9.81322 -9.60372 -9.17074 -8.58486 -8.27307 -8.09310 -6.20507 -4.26271 0.64937 0.95852 1.17977 1.82509 2.18163 2.72315 2.83458 2.99808 3.22218 3.30370 3.32180 3.35513 3.50555 3.64746 3.91139 4.23395 4.32261 4.46758 4.69183 4.76682 4.94646 4.95253 4.97207 5.09645 5.13674 5.16128 5.19911 5.25559 5.35768 5.48646 5.51276 5.78995 5.83094 5.98678 6.11509 6.16398 6.24659 6.34385 6.68551 6.75962 7.07414 7.10582 7.23461 7.38689 7.58564 7.74402 7.90195 8.00465 8.40638 8.78217 9.40084 10.87616 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013377 B = 0.003391 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.586244 B = 8255.986460 C = 9277.539847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.219 3.781 3 C -0.044 4.044 4 C 0.106 3.894 5 N -0.567 5.567 6 C 0.242 3.758 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.066 3.934 10 N -0.890 5.890 11 Si 0.898 3.102 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.579 3.421 16 O -0.507 6.507 17 C 0.085 3.915 18 N -0.197 5.197 19 N -0.414 5.414 20 C 0.166 3.834 21 C -0.151 4.151 22 C -0.095 4.095 23 C -0.138 4.138 24 C -0.095 4.095 25 C -0.129 4.129 26 C 0.503 3.497 27 O -0.478 6.478 28 C -0.151 4.151 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.265 0.735 36 H 0.152 0.848 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.150 0.850 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.020 -5.610 -13.637 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.099 4.099 3 C -0.085 4.085 4 C -0.020 4.020 5 N -0.297 5.297 6 C 0.124 3.876 7 C -0.574 4.574 8 H 0.079 0.921 9 C -0.138 4.138 10 N -0.528 5.528 11 Si 0.726 3.274 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.361 3.639 16 O -0.380 6.380 17 C -0.108 4.108 18 N -0.009 5.009 19 N -0.225 5.225 20 C 0.074 3.926 21 C -0.172 4.172 22 C -0.114 4.114 23 C -0.157 4.157 24 C -0.113 4.113 25 C -0.149 4.149 26 C 0.292 3.708 27 O -0.350 6.350 28 C -0.193 4.193 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.169 0.831 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.168 0.832 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.848 -5.713 -13.708 18.998 hybrid contribution 1.183 1.027 -0.122 1.571 sum -10.666 -4.686 -13.829 18.082 Atomic orbital electron populations 1.81189 1.12777 1.08441 1.09352 1.28942 0.94992 0.93236 0.92718 1.19753 0.81908 1.01045 1.05829 1.21722 0.80991 0.93916 1.05380 1.48222 1.05878 1.66388 1.09231 1.19585 0.92866 0.97579 0.77530 1.21407 1.37273 0.91834 1.06866 0.92062 1.24901 0.95074 0.98169 0.95615 1.69918 1.37846 1.33975 1.11107 0.86437 0.78169 0.84740 0.78070 1.19730 1.20886 1.20786 1.16564 0.86476 0.79799 0.81056 1.90897 1.11930 1.50091 1.85049 1.25701 0.90899 0.96800 0.97397 1.76025 1.15413 1.12304 0.97192 1.47370 1.05696 1.65648 1.03736 1.17653 0.80461 1.01201 0.93253 1.21470 0.98798 1.03140 0.93748 1.20999 0.91659 0.98903 0.99842 1.21201 0.99379 1.01856 0.93224 1.21044 0.95911 0.98392 0.95972 1.20925 0.91592 1.02690 0.99695 1.21521 0.85632 0.75614 0.88037 1.90690 1.85342 1.47490 1.11460 1.21895 0.98226 1.09124 0.90015 0.87957 0.86685 0.88244 0.88479 0.93872 0.92843 0.92523 0.83089 0.85358 0.85792 0.85380 0.84976 0.83225 0.83142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.24 18.50 42.15 0.78 -5.46 16 2 C 0.22 2.68 14.44 -20.76 -0.30 2.38 16 3 C -0.04 -0.48 5.55 -29.51 -0.16 -0.64 16 4 C 0.11 1.41 4.94 -4.04 -0.02 1.39 16 5 N -0.57 -9.58 2.47 -176.60 -0.44 -10.02 16 6 C 0.24 5.26 5.16 -5.19 -0.03 5.23 16 7 C -0.54 -13.32 9.39 -34.44 -0.32 -13.64 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -24.03 13.29 55.43 0.74 -23.30 16 11 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 C 0.58 9.59 7.59 -12.84 -0.10 9.49 16 16 O -0.51 -10.15 16.54 5.22 0.09 -10.07 16 17 C 0.09 1.10 6.94 -79.68 -0.55 0.55 16 18 N -0.20 -2.48 6.60 35.13 0.23 -2.24 16 19 N -0.41 -5.36 3.73 -9.46 -0.04 -5.40 16 20 C 0.17 2.16 6.66 -83.65 -0.56 1.60 16 21 C -0.15 -1.82 9.34 -39.39 -0.37 -2.19 16 22 C -0.10 -0.95 10.04 -39.61 -0.40 -1.35 16 23 C -0.14 -1.32 10.04 -39.54 -0.40 -1.71 16 24 C -0.09 -1.02 10.04 -39.61 -0.40 -1.42 16 25 C -0.13 -1.60 9.61 -39.39 -0.38 -1.98 16 26 C 0.50 6.39 8.28 -10.35 -0.09 6.30 16 27 O -0.48 -6.87 15.09 5.58 0.08 -6.78 16 28 C -0.15 -1.64 6.76 -28.22 -0.19 -1.83 16 29 H 0.10 1.04 7.08 -51.93 -0.37 0.67 16 30 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 1.36 8.02 -51.93 -0.42 0.94 16 32 H 0.10 1.26 5.36 -51.93 -0.28 0.99 16 33 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 34 H 0.05 1.31 7.37 -51.93 -0.38 0.93 16 35 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.15 1.92 5.34 -52.48 -0.28 1.64 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.13 1.69 6.55 -52.49 -0.34 1.34 16 41 H 0.15 1.44 8.14 -51.93 -0.42 1.01 16 42 H 0.15 1.34 8.14 -51.92 -0.42 0.92 16 LS Contribution 369.82 15.07 5.57 5.57 Total: -1.00 -30.32 369.82 -6.92 -37.24 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.57 Total: 1.49 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -4.35 Total: 3.79 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 1.28 Total: -46.42 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.17 Total: -16.85 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.32 -6.92 -37.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147883878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.108 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds