Wall clock time and date at job start Tue Mar 31 2020 23:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00177 * 2 1 4 4 H 1.48501 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47078 * 299.99974 * 3 2 1 6 6 H 1.48498 * 109.47060 * 60.00146 * 3 2 1 7 7 C 1.38814 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99925 * 195.48257 * 7 2 1 9 9 N 1.36937 * 120.00216 * 15.47295 * 7 2 1 10 10 C 1.47507 * 118.75390 * 26.09568 * 9 7 2 11 11 C 1.53578 * 111.02741 * 138.37176 * 10 9 7 12 12 C 1.51528 * 109.57991 * 320.01829 * 11 10 9 13 13 O 1.42163 * 108.76434 * 91.39852 * 12 11 10 14 14 C 1.38014 * 119.43813 * 272.77995 * 13 12 11 15 15 H 1.08997 * 109.47108 * 303.42276 * 14 13 12 16 16 C 1.53001 * 109.46980 * 183.42141 * 14 13 12 17 17 N 1.46505 * 109.46489 * 64.99851 * 16 14 13 18 18 C 1.34776 * 119.99662 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00117 * 359.97438 * 18 17 16 20 20 C 1.50697 * 120.00076 * 180.02562 * 18 17 16 21 21 O 1.42901 * 109.47336 * 180.02562 * 20 18 17 22 22 C 1.36228 * 117.00220 * 179.97438 * 21 20 18 23 23 C 1.38666 * 122.58754 * 179.97438 * 22 21 20 24 24 C 1.33431 * 114.88593 * 179.97438 * 23 22 21 25 25 S 1.75861 * 109.65970 * 359.97438 * 24 23 22 26 26 C 1.33628 * 122.58575 * 359.70474 * 22 21 20 27 27 C 1.45114 * 118.76175 * 206.09108 * 9 7 2 28 28 H 0.97003 * 119.99403 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.17185 * 17.97137 * 10 9 7 30 30 H 1.09002 * 109.12457 * 258.74190 * 10 9 7 31 31 H 1.09002 * 109.45128 * 199.98344 * 11 10 9 32 32 H 1.09003 * 109.44852 * 80.05619 * 11 10 9 33 33 H 1.08996 * 109.59372 * 331.61790 * 12 11 10 34 34 H 1.08999 * 109.59112 * 211.17922 * 12 11 10 35 35 H 1.09000 * 109.47276 * 304.99757 * 16 14 13 36 36 H 1.08997 * 109.46947 * 184.99560 * 16 14 13 37 37 H 0.96992 * 120.00377 * 359.97438 * 17 16 14 38 38 H 1.09000 * 109.47390 * 59.99606 * 20 18 17 39 39 H 1.09007 * 109.46932 * 299.99459 * 20 18 17 40 40 H 1.08002 * 122.55560 * 359.97438 * 23 22 21 41 41 H 1.07998 * 125.17285 * 180.02562 * 24 23 22 42 42 H 1.07999 * 125.19613 * 359.97438 * 26 22 21 43 43 H 1.09003 * 109.46580 * 149.26975 * 27 9 7 44 44 H 1.09008 * 109.46004 * 29.31811 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0609 -1.2193 0.2491 9 7 1.3627 -2.3665 -0.3174 10 6 0.1711 -2.3024 -1.1845 11 6 0.1768 -3.4420 -2.2140 12 6 1.5843 -3.6474 -2.7364 13 8 2.2339 -4.6212 -1.9297 14 6 2.8927 -4.2230 -0.7841 15 1 3.6427 -3.4741 -1.0381 16 6 3.5761 -5.4322 -0.1425 17 7 4.6225 -5.9333 -1.0371 18 6 5.3617 -7.0013 -0.6777 19 8 5.1611 -7.5474 0.3865 20 6 6.4385 -7.5164 -1.5976 21 8 7.0760 -8.6466 -0.9990 22 6 8.0800 -9.2367 -1.7058 23 6 8.7769 -10.3391 -1.2349 24 6 9.7286 -10.7930 -2.0526 25 16 9.7805 -9.8048 -3.5063 26 6 8.4656 -8.8012 -2.9088 27 6 1.8748 -3.6167 0.2123 28 1 -0.4849 0.8401 0.0004 29 1 0.1608 -1.3467 -1.7086 30 1 -0.7240 -2.3818 -0.5676 31 1 -0.4841 -3.1862 -3.0422 32 1 -0.1726 -4.3599 -1.7413 33 1 2.1333 -2.7071 -2.6872 34 1 1.5439 -3.9959 -3.7684 35 1 2.8394 -6.2167 0.0303 36 1 4.0212 -5.1362 0.8074 37 1 4.7827 -5.4968 -1.8884 38 1 7.1754 -6.7319 -1.7696 39 1 5.9937 -7.8119 -2.5480 40 1 8.5656 -10.7955 -0.2791 41 1 10.3691 -11.6393 -1.8525 42 1 8.0358 -7.9609 -3.4338 43 1 1.0500 -4.3142 0.3584 44 1 2.3673 -3.4319 1.1671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150586945.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:48 Heat of formation + Delta-G solvation = -49.278690 kcal Electronic energy + Delta-G solvation = -26870.326977 eV Core-core repulsion = 22916.314516 eV Total energy + Delta-G solvation = -3954.012461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.45424 -39.45413 -38.70491 -36.21742 -35.30585 -34.68333 -32.27579 -31.54956 -29.75518 -29.38973 -28.00985 -25.65253 -25.25105 -23.87568 -22.67328 -20.97994 -20.51925 -20.03943 -19.59476 -18.62579 -17.49494 -17.05345 -16.90370 -16.65474 -16.14374 -15.88304 -15.22240 -14.97682 -14.66670 -14.43566 -14.39924 -13.88023 -13.75113 -13.37189 -13.26582 -13.02933 -12.98699 -12.66696 -12.26731 -12.16968 -12.12205 -11.46205 -11.26292 -11.25272 -11.24745 -11.03510 -10.93334 -10.67699 -10.28015 -9.96741 -9.89323 -9.81542 -9.73779 -9.20636 -9.06233 -8.88212 -8.48790 -8.34389 -6.81183 -5.89128 -3.34142 0.61670 1.25445 1.61322 2.37434 2.44304 2.51320 3.29177 3.37797 3.39219 3.53783 4.09120 4.39355 4.49262 4.54755 4.71936 4.77023 4.90062 5.03059 5.13053 5.30242 5.47194 5.52571 5.55240 5.58492 5.64677 5.81382 5.83412 5.92059 5.96373 6.11074 6.19419 6.29548 6.42117 6.50586 6.65349 6.69486 6.77120 6.88789 7.30320 7.43752 7.58610 7.71980 8.11595 8.15474 8.33957 9.11816 9.76509 10.22472 11.18389 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.001944 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.668096 B =14399.497603 C =14714.600799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.006 3.994 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.177 4.177 12 C 0.088 3.912 13 O -0.396 6.396 14 C 0.066 3.934 15 H 0.053 0.947 16 C 0.134 3.866 17 N -0.715 5.715 18 C 0.513 3.487 19 O -0.522 6.522 20 C 0.043 3.957 21 O -0.278 6.278 22 C 0.118 3.882 23 C -0.139 4.139 24 C -0.187 4.187 25 S 0.116 5.884 26 C -0.327 4.327 27 C 0.128 3.872 28 H 0.254 0.746 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.404 0.596 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.152 0.848 41 H 0.173 0.827 42 H 0.168 0.832 43 H 0.044 0.956 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.507 -17.202 -8.978 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.193 4.193 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.052 3.948 11 C -0.216 4.216 12 C 0.012 3.988 13 O -0.316 6.316 14 C 0.004 3.996 15 H 0.070 0.930 16 C 0.011 3.989 17 N -0.368 5.368 18 C 0.297 3.703 19 O -0.398 6.398 20 C -0.036 4.036 21 O -0.190 6.190 22 C 0.062 3.938 23 C -0.171 4.171 24 C -0.323 4.323 25 S 0.376 5.624 26 C -0.463 4.463 27 C -0.002 4.002 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.238 0.762 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.170 0.830 41 H 0.190 0.810 42 H 0.185 0.815 43 H 0.063 0.937 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.967 -17.662 -9.335 25.574 hybrid contribution -0.491 1.710 0.666 1.900 sum 15.476 -15.952 -8.668 23.857 Atomic orbital electron populations 1.70081 1.05256 1.25502 1.53683 1.25059 0.95309 0.98474 1.00434 0.86234 0.79329 0.83891 0.77365 1.20246 1.21517 1.21601 1.19253 0.92409 0.84830 1.43037 0.91524 1.43841 1.31489 1.01533 1.54381 1.21003 0.88456 0.95451 0.89912 1.22772 0.97058 1.01346 1.00427 1.22015 0.92815 0.92175 0.91767 1.86071 1.70715 1.38021 1.36761 1.22640 0.94942 0.93760 0.88231 0.92956 1.21482 0.88652 0.96175 0.92614 1.45818 1.36432 1.31194 1.23324 1.19924 0.82407 0.80786 0.87182 1.90756 1.68351 1.57235 1.23414 1.22472 0.95429 0.88985 0.96666 1.86208 1.46085 1.43298 1.43457 1.17915 0.90863 0.94338 0.90713 1.19507 0.97621 0.97073 1.02919 1.25531 1.03734 1.05145 0.97885 1.84185 1.33603 1.24463 1.20127 1.25375 1.08706 1.10572 1.01641 1.21405 0.95127 0.89015 0.94627 0.93576 0.90617 0.95435 0.92084 0.92356 0.92027 0.91231 0.90715 0.89959 0.76193 0.89027 0.88989 0.83022 0.80968 0.81497 0.93748 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.24 11.00 55.49 0.61 -24.63 16 2 C 0.01 0.17 4.89 -17.43 -0.09 0.08 16 3 Si 0.90 20.94 29.58 -169.99 -5.03 15.91 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.27 -6.89 9.46 -15.06 -0.14 -7.03 16 8 H 0.07 1.70 7.88 -52.48 -0.41 1.29 16 9 N -0.59 -13.91 2.23 -172.02 -0.38 -14.29 16 10 C 0.18 4.03 4.70 -3.19 -0.02 4.02 16 11 C -0.18 -3.20 5.78 -27.18 -0.16 -3.36 16 12 C 0.09 1.48 6.37 36.41 0.23 1.71 16 13 O -0.40 -6.62 9.38 -26.53 -0.25 -6.87 16 14 C 0.07 1.10 2.68 -25.78 -0.07 1.03 16 15 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 16 C 0.13 1.95 5.34 -4.04 -0.02 1.93 16 17 N -0.71 -8.83 5.49 -60.29 -0.33 -9.16 16 18 C 0.51 6.88 7.91 -10.99 -0.09 6.79 16 19 O -0.52 -9.34 16.50 -14.36 -0.24 -9.58 16 20 C 0.04 0.43 5.35 36.00 0.19 0.62 16 21 O -0.28 -3.47 9.74 -40.38 -0.39 -3.86 16 22 C 0.12 1.23 6.64 -41.04 -0.27 0.96 16 23 C -0.14 -1.25 10.17 -41.10 -0.42 -1.67 16 24 C -0.19 -1.31 11.22 29.05 0.33 -0.98 16 25 S 0.12 0.84 23.34 -107.50 -2.51 -1.67 16 26 C -0.33 -2.82 10.09 29.12 0.29 -2.52 16 27 C 0.13 2.54 5.12 -3.83 -0.02 2.52 16 28 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.08 1.91 6.37 -51.93 -0.33 1.58 16 30 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.06 8.01 -51.93 -0.42 0.64 16 33 H 0.06 1.15 7.40 -51.93 -0.38 0.77 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.40 4.07 8.46 -40.82 -0.35 3.72 16 38 H 0.09 0.68 7.87 -51.93 -0.41 0.27 16 39 H 0.09 0.70 7.84 -51.93 -0.41 0.29 16 40 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.17 0.72 8.06 -52.49 -0.42 0.29 16 42 H 0.17 1.13 7.02 -52.49 -0.37 0.76 16 43 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 44 H 0.06 1.12 7.98 -51.92 -0.41 0.71 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -31.96 374.42 -9.54 -41.50 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.42 Total: 2.91 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.24 Total: 4.09 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.10 Total: -48.08 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.88 Total: -20.31 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.96 -9.54 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150586945.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.774 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds