Wall clock time and date at job start Tue Mar 31 2020 23:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00177 * 2 1 4 4 H 1.48501 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47078 * 299.99974 * 3 2 1 6 6 H 1.48498 * 109.47060 * 60.00146 * 3 2 1 7 7 C 1.38814 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99925 * 195.48257 * 7 2 1 9 9 N 1.36937 * 120.00216 * 15.47295 * 7 2 1 10 10 C 1.47507 * 118.75390 * 26.09568 * 9 7 2 11 11 C 1.53578 * 111.02741 * 138.37176 * 10 9 7 12 12 C 1.51528 * 109.57991 * 320.01829 * 11 10 9 13 13 O 1.42163 * 108.76434 * 91.39852 * 12 11 10 14 14 C 1.38014 * 119.43813 * 272.77995 * 13 12 11 15 15 H 1.08997 * 109.47108 * 303.42276 * 14 13 12 16 16 C 1.53001 * 109.46980 * 183.42141 * 14 13 12 17 17 N 1.46505 * 109.46489 * 64.99851 * 16 14 13 18 18 C 1.34776 * 119.99662 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00117 * 359.97438 * 18 17 16 20 20 C 1.50697 * 120.00076 * 180.02562 * 18 17 16 21 21 O 1.42901 * 109.47336 * 180.02562 * 20 18 17 22 22 C 1.36228 * 117.00220 * 179.97438 * 21 20 18 23 23 C 1.38666 * 122.58754 * 179.97438 * 22 21 20 24 24 C 1.33431 * 114.88593 * 179.97438 * 23 22 21 25 25 S 1.75861 * 109.65970 * 359.97438 * 24 23 22 26 26 C 1.33628 * 122.58575 * 359.70474 * 22 21 20 27 27 C 1.45114 * 118.76175 * 206.09108 * 9 7 2 28 28 H 0.97003 * 119.99403 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.17185 * 17.97137 * 10 9 7 30 30 H 1.09002 * 109.12457 * 258.74190 * 10 9 7 31 31 H 1.09002 * 109.45128 * 199.98344 * 11 10 9 32 32 H 1.09003 * 109.44852 * 80.05619 * 11 10 9 33 33 H 1.08996 * 109.59372 * 331.61790 * 12 11 10 34 34 H 1.08999 * 109.59112 * 211.17922 * 12 11 10 35 35 H 1.09000 * 109.47276 * 304.99757 * 16 14 13 36 36 H 1.08997 * 109.46947 * 184.99560 * 16 14 13 37 37 H 0.96992 * 120.00377 * 359.97438 * 17 16 14 38 38 H 1.09000 * 109.47390 * 59.99606 * 20 18 17 39 39 H 1.09007 * 109.46932 * 299.99459 * 20 18 17 40 40 H 1.08002 * 122.55560 * 359.97438 * 23 22 21 41 41 H 1.07998 * 125.17285 * 180.02562 * 24 23 22 42 42 H 1.07999 * 125.19613 * 359.97438 * 26 22 21 43 43 H 1.09003 * 109.46580 * 149.26975 * 27 9 7 44 44 H 1.09008 * 109.46004 * 29.31811 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0609 -1.2193 0.2491 9 7 1.3627 -2.3665 -0.3174 10 6 0.1711 -2.3024 -1.1845 11 6 0.1768 -3.4420 -2.2140 12 6 1.5843 -3.6474 -2.7364 13 8 2.2339 -4.6212 -1.9297 14 6 2.8927 -4.2230 -0.7841 15 1 3.6427 -3.4741 -1.0381 16 6 3.5761 -5.4322 -0.1425 17 7 4.6225 -5.9333 -1.0371 18 6 5.3617 -7.0013 -0.6777 19 8 5.1611 -7.5474 0.3865 20 6 6.4385 -7.5164 -1.5976 21 8 7.0760 -8.6466 -0.9990 22 6 8.0800 -9.2367 -1.7058 23 6 8.7769 -10.3391 -1.2349 24 6 9.7286 -10.7930 -2.0526 25 16 9.7805 -9.8048 -3.5063 26 6 8.4656 -8.8012 -2.9088 27 6 1.8748 -3.6167 0.2123 28 1 -0.4849 0.8401 0.0004 29 1 0.1608 -1.3467 -1.7086 30 1 -0.7240 -2.3818 -0.5676 31 1 -0.4841 -3.1862 -3.0422 32 1 -0.1726 -4.3599 -1.7413 33 1 2.1333 -2.7071 -2.6872 34 1 1.5439 -3.9959 -3.7684 35 1 2.8394 -6.2167 0.0303 36 1 4.0212 -5.1362 0.8074 37 1 4.7827 -5.4968 -1.8884 38 1 7.1754 -6.7319 -1.7696 39 1 5.9937 -7.8119 -2.5480 40 1 8.5656 -10.7955 -0.2791 41 1 10.3691 -11.6393 -1.8525 42 1 8.0358 -7.9609 -3.4338 43 1 1.0500 -4.3142 0.3584 44 1 2.3673 -3.4319 1.1671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150586945.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:47 Heat of formation + Delta-G solvation = -69.692856 kcal Electronic energy + Delta-G solvation = -26871.212202 eV Core-core repulsion = 22916.314516 eV Total energy + Delta-G solvation = -3954.897686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.34952 -40.62447 -39.91425 -37.06091 -36.85150 -35.96037 -33.71189 -33.43684 -30.90830 -30.02832 -29.28562 -27.22120 -26.89937 -24.79750 -23.99873 -22.32742 -21.69914 -21.26687 -20.71005 -19.30727 -18.88196 -18.30717 -17.81781 -17.68637 -17.33466 -17.18006 -16.78069 -16.42120 -15.83412 -15.72188 -15.52021 -15.01485 -14.94891 -14.72009 -14.35545 -14.24643 -13.94230 -13.71639 -13.64312 -13.47272 -13.13570 -13.00797 -12.83033 -12.79728 -12.49528 -12.39501 -12.05953 -11.96152 -11.82643 -11.77723 -11.47988 -11.31956 -11.04665 -10.55059 -10.28644 -10.18398 -9.78420 -8.95375 -8.73650 -7.90342 -5.37650 0.03127 0.69167 1.02241 1.44201 1.46965 1.47348 1.56407 1.59587 1.73790 2.47882 2.68835 2.76087 3.25095 3.53671 3.61132 3.96608 4.04661 4.07140 4.10152 4.14199 4.22206 4.35404 4.37305 4.46447 4.52798 4.57534 4.66793 4.74363 4.83467 4.90838 4.94172 4.97716 5.14183 5.18749 5.24078 5.24292 5.32728 5.46624 5.60984 5.74978 6.17545 6.34769 6.48193 6.73871 7.12553 7.13618 7.85510 8.26655 9.15517 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.001944 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.668096 B =14399.497603 C =14714.600799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.296 1.296 7 C -0.267 4.267 8 H 0.069 0.931 9 N -0.605 5.605 10 C 0.185 3.815 11 C -0.165 4.165 12 C 0.092 3.908 13 O -0.391 6.391 14 C 0.087 3.913 15 H 0.050 0.950 16 C 0.143 3.857 17 N -0.703 5.703 18 C 0.512 3.488 19 O -0.574 6.574 20 C 0.048 3.952 21 O -0.310 6.310 22 C 0.093 3.907 23 C -0.168 4.168 24 C -0.178 4.178 25 S 0.141 5.859 26 C -0.331 4.331 27 C 0.122 3.878 28 H 0.249 0.751 29 H 0.046 0.954 30 H -0.008 1.008 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.418 0.582 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.151 0.849 41 H 0.200 0.800 42 H 0.185 0.815 43 H 0.042 0.958 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.720 -18.204 -11.244 27.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.243 4.243 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.223 1.223 7 C -0.397 4.397 8 H 0.087 0.913 9 N -0.327 5.327 10 C 0.060 3.940 11 C -0.204 4.204 12 C 0.016 3.984 13 O -0.310 6.310 14 C 0.026 3.974 15 H 0.067 0.933 16 C 0.019 3.981 17 N -0.356 5.356 18 C 0.299 3.701 19 O -0.453 6.453 20 C -0.030 4.030 21 O -0.224 6.224 22 C 0.037 3.963 23 C -0.199 4.199 24 C -0.313 4.313 25 S 0.401 5.599 26 C -0.466 4.466 27 C -0.006 4.006 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.010 0.990 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.255 0.745 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.168 0.832 41 H 0.217 0.783 42 H 0.202 0.798 43 H 0.060 0.940 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.216 -18.684 -11.642 28.574 hybrid contribution -1.160 1.953 1.374 2.655 sum 17.056 -16.731 -10.268 26.005 Atomic orbital electron populations 1.70241 1.06634 1.25727 1.55497 1.25788 0.96022 1.01474 1.01055 0.85247 0.78714 0.80017 0.76698 1.18949 1.21585 1.22297 1.19548 0.92621 0.85812 1.41705 0.91296 1.44041 1.31543 1.02122 1.55038 1.20778 0.86943 0.96125 0.90141 1.22631 0.98956 0.99142 0.99676 1.22078 0.91187 0.91642 0.93488 1.86102 1.70561 1.37946 1.36421 1.22273 0.93707 0.94264 0.87198 0.93255 1.21211 0.89064 0.95040 0.92783 1.45633 1.35521 1.31000 1.23475 1.20558 0.82588 0.80077 0.86899 1.90735 1.69931 1.58814 1.25810 1.22547 0.94977 0.89394 0.96101 1.86143 1.47094 1.44260 1.44931 1.18169 0.91253 0.95256 0.91600 1.19677 0.98829 0.97701 1.03706 1.25889 1.02918 1.05297 0.97209 1.84127 1.32460 1.23680 1.19594 1.25674 1.08835 1.11018 1.01096 1.21576 0.95818 0.87787 0.95463 0.94145 0.93509 0.99030 0.89732 0.92180 0.94004 0.87237 0.91469 0.90174 0.74484 0.86190 0.86196 0.83169 0.78303 0.79751 0.93963 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.00 11.00 21.65 0.24 -53.76 16 2 C -0.05 -2.59 4.89 84.86 0.41 -2.17 16 3 Si 0.96 43.51 29.58 68.60 2.03 45.54 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.27 -13.95 9.46 84.03 0.80 -13.15 16 8 H 0.07 3.51 7.88 -2.91 -0.02 3.48 16 9 N -0.61 -28.86 2.23 -698.14 -1.55 -30.41 16 10 C 0.18 8.64 4.70 86.38 0.41 9.04 16 11 C -0.17 -5.77 5.78 30.31 0.18 -5.59 16 12 C 0.09 2.85 6.37 71.50 0.46 3.30 16 13 O -0.39 -12.13 9.38 -117.85 -1.11 -13.23 16 14 C 0.09 2.78 2.68 31.21 0.08 2.87 16 15 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 16 C 0.14 4.02 5.34 86.38 0.46 4.49 16 17 N -0.70 -15.99 5.49 -463.05 -2.54 -18.53 16 18 C 0.51 13.08 7.91 87.66 0.69 13.78 16 19 O -0.57 -20.60 16.50 15.98 0.26 -20.33 16 20 C 0.05 0.84 5.35 71.23 0.38 1.22 16 21 O -0.31 -7.51 9.74 -77.12 -0.75 -8.26 16 22 C 0.09 1.83 6.64 21.33 0.14 1.97 16 23 C -0.17 -2.87 10.17 21.28 0.22 -2.66 16 24 C -0.18 -2.12 11.22 66.73 0.75 -1.37 16 25 S 0.14 1.67 23.34 -56.49 -1.32 0.35 16 26 C -0.33 -4.91 10.09 66.77 0.67 -4.23 16 27 C 0.12 4.84 5.12 87.26 0.45 5.29 16 28 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 29 H 0.05 2.43 6.37 -2.39 -0.02 2.42 16 30 H -0.01 -0.45 8.04 -2.39 -0.02 -0.46 16 31 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.06 2.09 8.01 -2.39 -0.02 2.07 16 33 H 0.04 1.49 7.40 -2.39 -0.02 1.47 16 34 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.42 7.17 8.46 -92.71 -0.78 6.38 16 38 H 0.12 1.41 7.87 -2.39 -0.02 1.39 16 39 H 0.12 1.42 7.84 -2.38 -0.02 1.41 16 40 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 41 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.19 1.88 7.02 -2.91 -0.02 1.86 16 43 H 0.04 1.68 8.11 -2.39 -0.02 1.66 16 44 H 0.05 2.06 7.98 -2.38 -0.02 2.04 16 Total: -1.00 -71.61 374.42 1.58 -70.03 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.23 Total: 15.83 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 6.09 Total: 12.78 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -3.86 Total: -102.71 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -1.59 Total: -41.83 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.32 Total: 0.35 kcal Total: -71.61 1.58 -70.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150586945.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.339 kcal (2) G-P(sol) polarization free energy of solvation -71.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds