Wall clock time and date at job start Tue Mar 31 2020 23:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00193 * 2 1 4 4 H 1.48496 * 109.46743 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46933 * 120.00103 * 3 2 1 6 6 H 1.48501 * 109.46949 * 240.00108 * 3 2 1 7 7 C 1.38816 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99905 * 152.06084 * 7 2 1 9 9 N 1.36940 * 119.99697 * 332.06400 * 7 2 1 10 10 C 1.43421 * 120.63473 * 326.03733 * 9 7 2 11 11 C 1.55326 * 116.24338 * 269.35649 * 10 9 7 12 12 C 1.55185 * 108.87298 * 319.46626 * 11 10 9 13 13 O 1.39642 * 110.56774 * 322.13960 * 12 11 10 14 14 C 1.42380 * 108.62643 * 101.17514 * 13 12 11 15 15 H 1.08999 * 108.62640 * 28.42370 * 14 13 12 16 16 C 1.53008 * 108.61832 * 146.33682 * 14 13 12 17 17 N 1.46496 * 109.46669 * 299.99796 * 16 14 13 18 18 C 1.34781 * 119.99780 * 180.02562 * 17 16 14 19 19 O 1.21281 * 119.99841 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.00347 * 180.02562 * 18 17 16 21 21 O 1.42894 * 109.47321 * 179.97438 * 20 18 17 22 22 C 1.36237 * 116.99899 * 179.97438 * 21 20 18 23 23 C 1.38662 * 122.58264 * 179.73626 * 22 21 20 24 24 C 1.33438 * 114.88496 * 179.76159 * 23 22 21 25 25 S 1.75867 * 109.65327 * 0.47860 * 24 23 22 26 26 C 1.33624 * 122.58656 * 0.02891 * 22 21 20 27 27 C 1.47479 * 113.75081 * 267.33283 * 14 13 12 28 28 H 0.96999 * 119.99926 * 174.17801 * 1 2 3 29 29 H 1.09000 * 108.12889 * 31.11754 * 10 9 7 30 30 H 1.08997 * 108.12191 * 147.59878 * 10 9 7 31 31 H 1.09002 * 109.57209 * 79.27920 * 11 10 9 32 32 H 1.08998 * 109.57282 * 199.64251 * 11 10 9 33 33 H 1.09002 * 109.25740 * 82.42332 * 12 11 10 34 34 H 1.09004 * 109.25907 * 201.85861 * 12 11 10 35 35 H 1.09001 * 109.47016 * 59.99864 * 16 14 13 36 36 H 1.09002 * 109.46981 * 179.97438 * 16 14 13 37 37 H 0.96998 * 120.00790 * 0.02562 * 17 16 14 38 38 H 1.09001 * 109.47076 * 299.99774 * 20 18 17 39 39 H 1.08997 * 109.47116 * 59.99442 * 20 18 17 40 40 H 1.08001 * 122.56398 * 359.97438 * 23 22 21 41 41 H 1.08001 * 125.17680 * 180.22773 * 24 23 22 42 42 H 1.08003 * 125.19816 * 359.96985 * 26 22 21 43 43 H 1.08998 * 110.11359 * 297.75711 * 27 14 13 44 44 H 1.09007 * 110.15277 * 176.20727 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 2.9959 -1.2564 -0.4388 9 7 1.4452 -2.3192 0.5546 10 6 0.5886 -2.2127 1.6999 11 6 1.2799 -2.3187 3.0868 12 6 2.3628 -3.4285 3.0244 13 8 1.9220 -4.5008 2.2460 14 6 2.5243 -4.4066 0.9593 15 1 3.4828 -3.8975 1.0601 16 6 2.7767 -5.8210 0.4334 17 7 3.6707 -6.5310 1.3515 18 6 4.0348 -7.8020 1.0893 19 8 3.6219 -8.3579 0.0936 20 6 4.9539 -8.5326 2.0340 21 8 5.1897 -9.8536 1.5427 22 6 6.0066 -10.6526 2.2845 23 6 6.3096 -11.9554 1.9189 24 6 7.1287 -12.5970 2.7543 25 16 7.5535 -11.5401 4.0943 26 6 6.5731 -10.2433 3.4233 27 6 1.7057 -3.6781 -0.0277 28 1 -0.4850 -0.8357 -0.0852 29 1 0.0736 -1.2533 1.6502 30 1 -0.1636 -2.9988 1.6350 31 1 1.7475 -1.3660 3.3355 32 1 0.5396 -2.5730 3.8453 33 1 3.2735 -3.0181 2.5883 34 1 2.5754 -3.7806 4.0339 35 1 1.8299 -6.3563 0.3615 36 1 3.2379 -5.7650 -0.5527 37 1 4.0006 -6.0866 2.1480 38 1 5.9005 -7.9972 2.1067 39 1 4.4918 -8.5890 3.0196 40 1 5.9157 -12.4147 1.0243 41 1 7.4747 -13.6124 2.6291 42 1 6.4485 -9.2652 3.8642 43 1 0.7631 -4.2003 -0.1915 44 1 2.2483 -3.5826 -0.9683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150586946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:52 Heat of formation + Delta-G solvation = -44.781550 kcal Electronic energy + Delta-G solvation = -26973.590614 eV Core-core repulsion = 23019.773164 eV Total energy + Delta-G solvation = -3953.817450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -40.53283 -39.70232 -38.88904 -36.26049 -35.44820 -34.87248 -32.40984 -31.41949 -29.73718 -29.41902 -28.14440 -25.75729 -25.21988 -23.83351 -22.58564 -21.31480 -20.59522 -20.08370 -19.75074 -18.67704 -17.68847 -17.38138 -16.99327 -16.74196 -16.29178 -15.93204 -15.21703 -14.79504 -14.76778 -14.44552 -14.23810 -14.02910 -13.69532 -13.48987 -13.34456 -13.18820 -13.06702 -12.92067 -12.58868 -12.34770 -12.18385 -11.76493 -11.31490 -11.28199 -11.20518 -10.82760 -10.78580 -10.59324 -10.32929 -10.11326 -10.05042 -9.94729 -9.34070 -9.24182 -9.18118 -9.10733 -8.42060 -8.38208 -6.93413 -6.10637 -3.45846 0.58113 1.21906 1.57788 2.33175 2.37453 2.43786 3.42490 3.45431 3.46831 3.63871 4.19118 4.40649 4.46693 4.50616 4.65100 4.70755 4.86646 4.90032 4.99137 5.23624 5.31541 5.38145 5.49149 5.54195 5.57233 5.74270 5.77290 5.79623 5.84561 5.96389 5.98136 6.14782 6.32567 6.35002 6.52353 6.57820 6.68910 6.83635 6.93648 7.29281 7.33463 7.60211 7.94439 8.04069 8.50820 9.00783 9.73009 10.19671 11.05624 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.001898 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.332420 B =14752.091712 C =14974.390475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.018 4.018 3 Si 1.062 2.938 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.357 4.357 8 H 0.051 0.949 9 N -0.586 5.586 10 C 0.143 3.857 11 C -0.166 4.166 12 C 0.065 3.935 13 O -0.355 6.355 14 C 0.066 3.934 15 H 0.066 0.934 16 C 0.118 3.882 17 N -0.715 5.715 18 C 0.514 3.486 19 O -0.521 6.521 20 C 0.044 3.956 21 O -0.278 6.278 22 C 0.118 3.882 23 C -0.140 4.140 24 C -0.187 4.187 25 S 0.117 5.883 26 C -0.328 4.328 27 C 0.110 3.890 28 H 0.271 0.729 29 H 0.073 0.927 30 H 0.022 0.978 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.402 0.598 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.152 0.848 41 H 0.173 0.827 42 H 0.167 0.833 43 H 0.040 0.960 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.016 -20.062 9.428 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.222 4.222 3 Si 0.891 3.109 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.486 4.486 8 H 0.069 0.931 9 N -0.307 5.307 10 C 0.014 3.986 11 C -0.207 4.207 12 C -0.013 4.013 13 O -0.273 6.273 14 C 0.006 3.994 15 H 0.084 0.916 16 C -0.006 4.006 17 N -0.368 5.368 18 C 0.298 3.702 19 O -0.396 6.396 20 C -0.035 4.035 21 O -0.191 6.191 22 C 0.062 3.938 23 C -0.171 4.171 24 C -0.323 4.323 25 S 0.378 5.622 26 C -0.463 4.463 27 C -0.016 4.016 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.237 0.763 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.170 0.830 41 H 0.191 0.809 42 H 0.185 0.815 43 H 0.058 0.942 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.168 -19.119 9.867 25.761 hybrid contribution -0.287 -0.877 -0.678 1.145 sum 13.881 -19.996 9.189 26.019 Atomic orbital electron populations 1.70766 1.06931 1.30412 1.45472 1.25927 0.96318 1.01756 0.98169 0.83574 0.74966 0.76043 0.76293 1.21030 1.21978 1.21820 1.19834 0.99006 0.88954 1.40765 0.93092 1.43897 1.58251 1.01212 1.27361 1.20451 0.91955 1.01491 0.84677 1.23474 0.98686 0.97712 1.00779 1.22443 0.97184 0.87755 0.93887 1.87596 1.70686 1.46022 1.23017 1.22104 0.97364 0.93248 0.86687 0.91589 1.21774 0.93965 0.92168 0.92704 1.45742 1.50066 1.13067 1.27920 1.19934 0.81712 0.82066 0.86530 1.90759 1.54559 1.66560 1.27682 1.22455 1.00206 0.83061 0.97800 1.86208 1.62732 1.23073 1.47042 1.17912 0.93433 0.91477 0.91026 1.19507 1.02043 0.92443 1.03152 1.25541 1.03869 1.04215 0.98626 1.84194 1.48725 1.04080 1.25237 1.25373 1.12032 1.05828 1.03087 1.21135 0.97742 0.87851 0.94840 0.91819 0.90901 0.95967 0.92116 0.92862 0.92740 0.92376 0.90592 0.90150 0.76336 0.89029 0.88950 0.83014 0.80936 0.81517 0.94172 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 12.19 55.49 0.68 -25.32 16 2 C -0.02 -0.48 4.82 -17.43 -0.08 -0.57 16 3 Si 1.06 24.26 30.00 -169.99 -5.10 19.16 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.36 -9.41 9.45 -15.06 -0.14 -9.55 16 8 H 0.05 1.35 7.97 -52.49 -0.42 0.94 16 9 N -0.59 -13.83 2.36 -174.21 -0.41 -14.24 16 10 C 0.14 3.26 4.60 -4.44 -0.02 3.24 16 11 C -0.17 -3.14 6.75 -24.34 -0.16 -3.31 16 12 C 0.06 1.05 6.38 38.31 0.24 1.30 16 13 O -0.36 -5.94 9.54 -31.94 -0.30 -6.24 16 14 C 0.07 1.06 2.11 -29.39 -0.06 1.00 16 15 H 0.07 1.07 6.77 -51.93 -0.35 0.72 16 16 C 0.12 1.67 5.24 -4.04 -0.02 1.65 16 17 N -0.71 -8.52 5.43 -60.29 -0.33 -8.85 16 18 C 0.51 6.72 7.91 -10.98 -0.09 6.63 16 19 O -0.52 -9.18 16.50 -14.35 -0.24 -9.41 16 20 C 0.04 0.42 5.35 36.00 0.19 0.61 16 21 O -0.28 -3.40 9.74 -40.41 -0.39 -3.80 16 22 C 0.12 1.21 6.64 -41.04 -0.27 0.93 16 23 C -0.14 -1.23 10.17 -41.10 -0.42 -1.65 16 24 C -0.19 -1.27 11.22 29.05 0.33 -0.95 16 25 S 0.12 0.82 23.34 -107.50 -2.51 -1.69 16 26 C -0.33 -2.75 10.09 29.12 0.29 -2.45 16 27 C 0.11 2.15 5.62 -4.68 -0.03 2.12 16 28 H 0.27 7.97 7.20 -40.82 -0.29 7.68 16 29 H 0.07 1.91 5.13 -51.93 -0.27 1.64 16 30 H 0.02 0.50 7.98 -51.93 -0.41 0.09 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.91 6.66 -51.93 -0.35 0.56 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.40 3.85 8.33 -40.82 -0.34 3.51 16 38 H 0.09 0.65 7.86 -51.93 -0.41 0.24 16 39 H 0.09 0.68 7.86 -51.93 -0.41 0.27 16 40 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.17 1.08 7.02 -52.48 -0.37 0.72 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 1.44 8.00 -51.92 -0.42 1.02 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -32.74 372.49 -9.44 -42.18 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.21 Total: 3.60 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -0.24 Total: -0.99 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.06 Total: -48.42 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.94 Total: -19.46 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.10 Total: 19.16 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.74 -9.44 -42.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150586946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.601 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds