Wall clock time and date at job start Tue Mar 31 2020 23:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00193 * 2 1 4 4 H 1.48496 * 109.46743 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46933 * 120.00103 * 3 2 1 6 6 H 1.48501 * 109.46949 * 240.00108 * 3 2 1 7 7 C 1.38816 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99905 * 152.06084 * 7 2 1 9 9 N 1.36940 * 119.99697 * 332.06400 * 7 2 1 10 10 C 1.43421 * 120.63473 * 326.03733 * 9 7 2 11 11 C 1.55326 * 116.24338 * 269.35649 * 10 9 7 12 12 C 1.55185 * 108.87298 * 319.46626 * 11 10 9 13 13 O 1.39642 * 110.56774 * 322.13960 * 12 11 10 14 14 C 1.42380 * 108.62643 * 101.17514 * 13 12 11 15 15 H 1.08999 * 108.62640 * 28.42370 * 14 13 12 16 16 C 1.53008 * 108.61832 * 146.33682 * 14 13 12 17 17 N 1.46496 * 109.46669 * 299.99796 * 16 14 13 18 18 C 1.34781 * 119.99780 * 180.02562 * 17 16 14 19 19 O 1.21281 * 119.99841 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.00347 * 180.02562 * 18 17 16 21 21 O 1.42894 * 109.47321 * 179.97438 * 20 18 17 22 22 C 1.36237 * 116.99899 * 179.97438 * 21 20 18 23 23 C 1.38662 * 122.58264 * 179.73626 * 22 21 20 24 24 C 1.33438 * 114.88496 * 179.76159 * 23 22 21 25 25 S 1.75867 * 109.65327 * 0.47860 * 24 23 22 26 26 C 1.33624 * 122.58656 * 0.02891 * 22 21 20 27 27 C 1.47479 * 113.75081 * 267.33283 * 14 13 12 28 28 H 0.96999 * 119.99926 * 174.17801 * 1 2 3 29 29 H 1.09000 * 108.12889 * 31.11754 * 10 9 7 30 30 H 1.08997 * 108.12191 * 147.59878 * 10 9 7 31 31 H 1.09002 * 109.57209 * 79.27920 * 11 10 9 32 32 H 1.08998 * 109.57282 * 199.64251 * 11 10 9 33 33 H 1.09002 * 109.25740 * 82.42332 * 12 11 10 34 34 H 1.09004 * 109.25907 * 201.85861 * 12 11 10 35 35 H 1.09001 * 109.47016 * 59.99864 * 16 14 13 36 36 H 1.09002 * 109.46981 * 179.97438 * 16 14 13 37 37 H 0.96998 * 120.00790 * 0.02562 * 17 16 14 38 38 H 1.09001 * 109.47076 * 299.99774 * 20 18 17 39 39 H 1.08997 * 109.47116 * 59.99442 * 20 18 17 40 40 H 1.08001 * 122.56398 * 359.97438 * 23 22 21 41 41 H 1.08001 * 125.17680 * 180.22773 * 24 23 22 42 42 H 1.08003 * 125.19816 * 359.96985 * 26 22 21 43 43 H 1.08998 * 110.11359 * 297.75711 * 27 14 13 44 44 H 1.09007 * 110.15277 * 176.20727 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 2.9959 -1.2564 -0.4388 9 7 1.4452 -2.3192 0.5546 10 6 0.5886 -2.2127 1.6999 11 6 1.2799 -2.3187 3.0868 12 6 2.3628 -3.4285 3.0244 13 8 1.9220 -4.5008 2.2460 14 6 2.5243 -4.4066 0.9593 15 1 3.4828 -3.8975 1.0601 16 6 2.7767 -5.8210 0.4334 17 7 3.6707 -6.5310 1.3515 18 6 4.0348 -7.8020 1.0893 19 8 3.6219 -8.3579 0.0936 20 6 4.9539 -8.5326 2.0340 21 8 5.1897 -9.8536 1.5427 22 6 6.0066 -10.6526 2.2845 23 6 6.3096 -11.9554 1.9189 24 6 7.1287 -12.5970 2.7543 25 16 7.5535 -11.5401 4.0943 26 6 6.5731 -10.2433 3.4233 27 6 1.7057 -3.6781 -0.0277 28 1 -0.4850 -0.8357 -0.0852 29 1 0.0736 -1.2533 1.6502 30 1 -0.1636 -2.9988 1.6350 31 1 1.7475 -1.3660 3.3355 32 1 0.5396 -2.5730 3.8453 33 1 3.2735 -3.0181 2.5883 34 1 2.5754 -3.7806 4.0339 35 1 1.8299 -6.3563 0.3615 36 1 3.2379 -5.7650 -0.5527 37 1 4.0006 -6.0866 2.1480 38 1 5.9005 -7.9972 2.1067 39 1 4.4918 -8.5890 3.0196 40 1 5.9157 -12.4147 1.0243 41 1 7.4747 -13.6124 2.6291 42 1 6.4485 -9.2652 3.8642 43 1 0.7631 -4.2003 -0.1915 44 1 2.2483 -3.5826 -0.9683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150586946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:51 Heat of formation + Delta-G solvation = -66.205118 kcal Electronic energy + Delta-G solvation = -26974.519610 eV Core-core repulsion = 23019.773164 eV Total energy + Delta-G solvation = -3954.746446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.45517 -40.86430 -39.98830 -37.23805 -36.91428 -36.07936 -33.84251 -33.26797 -30.85891 -30.04947 -29.42342 -27.36048 -26.73683 -24.71574 -23.98601 -22.64155 -21.72176 -21.44996 -20.73495 -19.43939 -19.29884 -18.35588 -17.85078 -17.82845 -17.39380 -17.12207 -16.65152 -16.05292 -15.85084 -15.80730 -15.51762 -15.16533 -15.00874 -14.85442 -14.61209 -14.29548 -14.19431 -13.86388 -13.67383 -13.65335 -13.30391 -12.83977 -12.81001 -12.59522 -12.53986 -12.18069 -11.98812 -11.92488 -11.84229 -11.77073 -11.67669 -11.20730 -11.09579 -10.66545 -10.30819 -10.24738 -9.80167 -8.97235 -8.93223 -8.16444 -5.53941 0.01355 0.67414 1.00468 1.42325 1.54952 1.59062 1.64937 1.71818 1.83880 2.59697 2.68091 2.88794 3.17181 3.36463 3.54592 3.91525 3.94137 3.96613 4.04270 4.07154 4.23139 4.32167 4.35270 4.37925 4.44761 4.47114 4.52647 4.62654 4.69270 4.72446 4.92438 4.95518 4.97497 5.07837 5.13468 5.22284 5.25042 5.27668 5.40443 5.86614 6.14520 6.25759 6.36456 6.42501 7.03880 7.07720 7.74650 8.20513 8.92702 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.001898 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.332420 B =14752.091712 C =14974.390475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.070 4.070 3 Si 1.110 2.890 4 H -0.295 1.295 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.355 4.355 8 H 0.050 0.950 9 N -0.601 5.601 10 C 0.145 3.855 11 C -0.162 4.162 12 C 0.069 3.931 13 O -0.358 6.358 14 C 0.080 3.920 15 H 0.074 0.926 16 C 0.129 3.871 17 N -0.702 5.702 18 C 0.513 3.487 19 O -0.574 6.574 20 C 0.048 3.952 21 O -0.311 6.311 22 C 0.093 3.907 23 C -0.168 4.168 24 C -0.178 4.178 25 S 0.142 5.858 26 C -0.330 4.330 27 C 0.107 3.893 28 H 0.253 0.747 29 H 0.036 0.964 30 H 0.013 0.987 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.418 0.582 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.150 0.850 41 H 0.200 0.800 42 H 0.186 0.814 43 H 0.033 0.967 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.667 -21.009 11.622 29.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.268 4.268 3 Si 0.935 3.065 4 H -0.222 1.222 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.484 4.484 8 H 0.067 0.933 9 N -0.324 5.324 10 C 0.017 3.983 11 C -0.202 4.202 12 C -0.008 4.008 13 O -0.275 6.275 14 C 0.020 3.980 15 H 0.091 0.909 16 C 0.004 3.996 17 N -0.355 5.355 18 C 0.299 3.701 19 O -0.453 6.453 20 C -0.030 4.030 21 O -0.225 6.225 22 C 0.037 3.963 23 C -0.200 4.200 24 C -0.313 4.313 25 S 0.403 5.597 26 C -0.466 4.466 27 C -0.017 4.017 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.255 0.745 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.168 0.832 41 H 0.217 0.783 42 H 0.203 0.797 43 H 0.051 0.949 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.854 -20.087 12.107 28.880 hybrid contribution -1.128 -0.666 -1.344 1.877 sum 15.726 -20.753 10.763 28.175 Atomic orbital electron populations 1.70893 1.07987 1.29272 1.48514 1.27223 0.96325 1.05111 0.98169 0.82926 0.73999 0.72127 0.77478 1.22169 1.20242 1.20077 1.20035 0.98737 0.89964 1.39675 0.93272 1.44078 1.58208 1.02057 1.28022 1.20387 0.92121 0.99052 0.86754 1.23393 0.99812 0.98828 0.98200 1.22492 0.95640 0.86814 0.95893 1.87614 1.71047 1.45919 1.22968 1.21776 0.96509 0.93924 0.85771 0.90858 1.21456 0.94012 0.90935 0.93174 1.45559 1.49203 1.12846 1.27933 1.20583 0.81344 0.81927 0.86256 1.90738 1.56672 1.67721 1.30120 1.22543 1.00832 0.82317 0.97316 1.86144 1.63708 1.24171 1.48456 1.18161 0.94336 0.91881 0.91916 1.19678 1.03521 0.92687 1.04078 1.25896 1.02439 1.05202 0.97772 1.84135 1.47706 1.03285 1.24610 1.25676 1.11432 1.07037 1.02457 1.21263 0.98105 0.86315 0.96010 0.93713 0.94620 0.96876 0.92941 0.91124 0.92859 0.88307 0.91930 0.90094 0.74519 0.86014 0.86238 0.83208 0.78309 0.79698 0.94874 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.37 12.19 21.65 0.26 -55.11 16 2 C -0.07 -3.86 4.82 84.86 0.41 -3.45 16 3 Si 1.11 49.00 30.00 68.60 2.06 51.06 16 4 H -0.30 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.35 -18.80 9.45 84.03 0.79 -18.00 16 8 H 0.05 2.59 7.97 -2.91 -0.02 2.57 16 9 N -0.60 -28.64 2.36 -705.08 -1.67 -30.31 16 10 C 0.14 6.71 4.60 87.75 0.40 7.12 16 11 C -0.16 -5.91 6.75 32.14 0.22 -5.69 16 12 C 0.07 2.03 6.38 72.73 0.46 2.49 16 13 O -0.36 -11.12 9.54 -137.21 -1.31 -12.43 16 14 C 0.08 2.46 2.11 28.87 0.06 2.52 16 15 H 0.07 2.21 6.77 -2.39 -0.02 2.19 16 16 C 0.13 3.52 5.24 86.38 0.45 3.97 16 17 N -0.70 -15.25 5.43 -463.05 -2.52 -17.77 16 18 C 0.51 12.74 7.91 87.66 0.69 13.43 16 19 O -0.57 -20.34 16.50 16.01 0.26 -20.08 16 20 C 0.05 0.81 5.35 71.24 0.38 1.19 16 21 O -0.31 -7.37 9.74 -77.22 -0.75 -8.12 16 22 C 0.09 1.79 6.64 21.32 0.14 1.93 16 23 C -0.17 -2.83 10.17 21.28 0.22 -2.61 16 24 C -0.18 -2.06 11.22 66.73 0.75 -1.31 16 25 S 0.14 1.62 23.34 -56.49 -1.32 0.30 16 26 C -0.33 -4.73 10.09 66.77 0.67 -4.06 16 27 C 0.11 4.23 5.62 83.95 0.47 4.70 16 28 H 0.25 15.60 7.20 -92.71 -0.67 14.94 16 29 H 0.04 1.94 5.13 -2.39 -0.01 1.93 16 30 H 0.01 0.60 7.98 -2.39 -0.02 0.58 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.05 1.60 6.66 -2.39 -0.02 1.59 16 34 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.42 6.57 8.33 -92.71 -0.77 5.80 16 38 H 0.12 1.30 7.86 -2.39 -0.02 1.28 16 39 H 0.12 1.35 7.86 -2.39 -0.02 1.34 16 40 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.20 1.06 8.06 -2.91 -0.02 1.03 16 42 H 0.19 1.76 7.02 -2.91 -0.02 1.74 16 43 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.07 2.87 8.00 -2.38 -0.02 2.85 16 Total: -1.00 -73.69 372.49 1.51 -72.18 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.35 Total: 18.04 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 6.13 Total: 2.22 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -3.92 Total: -103.18 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -1.80 Total: -40.63 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.06 Total: 51.06 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -1.32 Total: 0.30 kcal Total: -73.69 1.51 -72.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150586946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.978 kcal (2) G-P(sol) polarization free energy of solvation -73.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds