Wall clock time and date at job start Tue Mar 31 2020 23:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86799 * 120.00132 * 2 1 4 4 H 1.48500 * 109.47281 * 269.99716 * 3 2 1 5 5 H 1.48498 * 109.47307 * 29.99918 * 3 2 1 6 6 H 1.48499 * 109.47008 * 150.00022 * 3 2 1 7 7 C 1.40118 * 119.99491 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99446 * 179.97438 * 7 2 1 9 9 C 1.40822 * 120.00205 * 359.97438 * 7 2 1 10 10 N 1.33907 * 120.27523 * 359.97438 * 9 7 2 11 11 C 1.31725 * 119.89113 * 180.02562 * 10 9 7 12 12 C 1.38962 * 120.47584 * 359.97438 * 11 10 9 13 13 N 1.32240 * 120.57212 * 0.02562 * 12 11 10 14 14 C 1.32624 * 120.08428 * 359.97438 * 13 12 11 15 15 N 1.37940 * 120.23210 * 179.97438 * 14 13 12 16 16 C 1.46495 * 120.00554 * 359.97438 * 15 14 13 17 17 C 1.52998 * 119.54593 * 250.71010 * 16 15 14 18 18 C 1.52999 * 60.55675 * 248.22929 * 17 16 15 19 19 H 1.09005 * 119.53668 * 111.76273 * 18 17 16 20 20 C 1.54380 * 118.90121 * 268.89908 * 18 17 16 21 21 N 1.48146 * 104.61719 * 87.21082 * 20 18 17 22 22 C 1.34777 * 127.83816 * 140.39601 * 21 20 18 23 23 O 1.21694 * 119.99936 * 179.97438 * 22 21 20 24 24 C 1.46660 * 119.99822 * 359.97438 * 22 21 20 25 25 C 1.36550 * 125.98402 * 179.72093 * 24 22 21 26 26 C 1.40364 * 106.70314 * 179.84741 * 25 24 22 27 27 C 1.35129 * 107.11800 * 0.40562 * 26 25 24 28 28 O 1.33930 * 108.76726 * 359.74601 * 27 26 25 29 29 C 1.48146 * 104.32721 * 320.41447 * 21 20 18 30 30 H 0.97006 * 119.99962 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.75791 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.71176 * 180.02562 * 12 11 10 33 33 H 0.97007 * 119.99384 * 180.02562 * 15 14 13 34 34 H 1.09008 * 117.43823 * 355.88398 * 17 16 15 35 35 H 1.09000 * 117.44739 * 140.57731 * 17 16 15 36 36 H 1.09001 * 110.41272 * 205.99682 * 20 18 17 37 37 H 1.09007 * 110.40531 * 328.31344 * 20 18 17 38 38 H 1.07990 * 126.64770 * 359.95093 * 25 24 22 39 39 H 1.07997 * 126.44134 * 180.15608 * 26 25 24 40 40 H 1.08002 * 125.62028 * 179.71183 * 27 26 25 41 41 H 1.08997 * 110.40819 * 280.80291 * 29 21 20 42 42 H 1.08998 * 110.41128 * 158.36942 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5389 1.4401 0.7000 7 6 2.0078 -1.2135 -0.0005 8 1 3.0878 -1.2135 -0.0010 9 6 1.3037 -2.4330 -0.0005 10 7 -0.0354 -2.4394 0.0005 11 6 -0.6864 -3.5845 0.0010 12 6 0.0064 -4.7891 -0.0001 13 7 1.3287 -4.8045 -0.0011 14 6 2.0068 -3.6647 -0.0016 15 7 3.3862 -3.6772 -0.0022 16 6 4.1072 -4.9524 -0.0016 17 6 4.8619 -5.3919 1.2547 18 6 5.6488 -5.0153 -0.0022 19 1 6.2607 -4.1132 -0.0029 20 6 6.0023 -6.1207 -1.0203 21 7 4.8283 -6.1884 -1.9213 22 6 4.8208 -6.3591 -3.2582 23 8 3.7644 -6.3940 -3.8613 24 6 6.0859 -6.5028 -3.9861 25 6 6.2205 -6.6859 -5.3326 26 6 7.5973 -6.7684 -5.5929 27 6 8.2343 -6.6429 -4.4078 28 8 7.3203 -6.4830 -3.4420 29 6 3.6642 -6.0255 -1.0195 30 1 -0.4850 0.8401 0.0004 31 1 -1.7664 -3.5871 0.0022 32 1 -0.5399 -5.7208 -0.0001 33 1 3.8787 -2.8415 -0.0022 34 1 4.8904 -4.6955 2.0928 35 1 4.8189 -6.4475 1.5231 36 1 6.8966 -5.8490 -1.5811 37 1 6.1485 -7.0735 -0.5114 38 1 5.4224 -6.7524 -6.0570 39 1 8.0603 -6.9100 -6.5582 40 1 9.3043 -6.6679 -4.2631 41 1 3.4433 -6.9637 -0.5107 42 1 2.7946 -5.6819 -1.5796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163630211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:20 Heat of formation + Delta-G solvation = 91.194005 kcal Electronic energy + Delta-G solvation = -29033.963401 eV Core-core repulsion = 24982.891093 eV Total energy + Delta-G solvation = -4051.072308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.86270 -40.32142 -38.91511 -38.17360 -34.59258 -33.99006 -33.33401 -32.84983 -31.42366 -30.25212 -28.92819 -27.66253 -26.41743 -25.90438 -22.96448 -22.37450 -21.92879 -21.76067 -20.92212 -20.01297 -19.37747 -17.91487 -17.60730 -16.89142 -16.54554 -16.37405 -15.94253 -15.60509 -15.31752 -15.02043 -14.49757 -14.12076 -13.85852 -13.73064 -13.38098 -13.29095 -13.16497 -12.97488 -12.89161 -12.54212 -12.11894 -12.02966 -11.75243 -11.57409 -11.43905 -11.34541 -10.76493 -10.60748 -10.37646 -10.26803 -10.24467 -10.03152 -9.74169 -9.38668 -9.25406 -8.98954 -8.64960 -8.53692 -7.36780 -6.84489 -6.43415 -4.45402 0.92951 2.16395 2.44956 2.64135 2.96764 3.03338 3.04195 3.05802 3.15216 3.21827 3.65232 3.86860 4.01242 4.39536 4.61694 4.68013 4.72172 4.74925 4.76874 5.01833 5.20716 5.35689 5.44899 5.51871 5.56561 5.66299 5.74518 5.84817 5.88442 6.00809 6.09303 6.10821 6.14245 6.16351 6.23071 6.40960 6.42529 6.67244 6.76084 6.97716 7.05381 7.47178 7.64074 7.92699 8.02853 8.06292 8.30996 8.59231 8.82542 9.41983 9.97580 10.22329 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.003255 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.614378 B = 8599.165462 C = 9206.487751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.424 4.424 8 H 0.081 0.919 9 C 0.198 3.802 10 N -0.447 5.447 11 C 0.033 3.967 12 C -0.083 4.083 13 N -0.491 5.491 14 C 0.259 3.741 15 N -0.684 5.684 16 C 0.129 3.871 17 C -0.143 4.143 18 C -0.198 4.198 19 H 0.121 0.879 20 C 0.129 3.871 21 N -0.615 5.615 22 C 0.618 3.382 23 O -0.515 6.515 24 C -0.065 4.065 25 C -0.125 4.125 26 C -0.224 4.224 27 C -0.016 4.016 28 O -0.161 6.161 29 C 0.149 3.851 30 H 0.275 0.725 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.408 0.592 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.209 0.791 41 H 0.082 0.918 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.533 -9.629 -3.438 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.157 4.157 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.458 4.458 8 H 0.099 0.901 9 C 0.064 3.936 10 N -0.164 5.164 11 C -0.130 4.130 12 C -0.238 4.238 13 N -0.211 5.211 14 C 0.013 3.987 15 N -0.324 5.324 16 C 0.037 3.963 17 C -0.184 4.184 18 C -0.218 4.218 19 H 0.139 0.861 20 C 0.006 3.994 21 N -0.347 5.347 22 C 0.407 3.593 23 O -0.392 6.392 24 C -0.117 4.117 25 C -0.145 4.145 26 C -0.243 4.243 27 C -0.085 4.085 28 O -0.057 6.057 29 C 0.027 3.973 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.246 0.754 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.178 0.822 39 H 0.173 0.827 40 H 0.225 0.775 41 H 0.100 0.900 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.609 -9.676 -3.581 18.711 hybrid contribution 0.690 1.076 -0.191 1.292 sum 16.299 -8.600 -3.772 18.811 Atomic orbital electron populations 1.70093 1.07174 1.27991 1.28186 1.26000 0.94915 1.00923 0.93837 0.86329 0.80377 0.80894 0.79282 1.19377 1.20017 1.18555 1.19215 0.93731 0.89408 1.43448 0.90101 1.18998 0.89339 0.90958 0.94310 1.69510 1.06177 1.24628 1.16119 1.23179 0.99750 0.90239 0.99824 1.22287 0.89563 0.97582 1.14323 1.67289 1.08879 1.28197 1.16749 1.19184 0.84314 0.91179 1.03994 1.42830 1.01848 1.04106 1.83588 1.21276 0.88606 0.88968 0.97406 1.23495 1.00575 1.02360 0.91940 1.24022 0.96068 1.01577 1.00166 0.86149 1.21964 0.89090 0.97896 0.90425 1.49211 1.09821 1.70424 1.05289 1.16114 0.85792 0.77402 0.80015 1.90925 1.29744 1.51668 1.66887 1.22119 0.83483 1.12826 0.93315 1.21982 0.97496 1.00678 0.94389 1.21845 0.93491 1.09272 0.99659 1.24429 0.95008 1.02746 0.86363 1.84158 1.14817 1.69778 1.36899 1.21845 0.88690 0.97052 0.89679 0.91402 0.85767 0.85840 0.75388 0.87634 0.88639 0.88928 0.90424 0.82230 0.82686 0.77473 0.89994 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.69 11.48 55.56 0.64 -18.05 16 2 C 0.07 1.71 5.50 -17.31 -0.10 1.61 16 3 Si 0.91 18.01 29.56 -169.99 -5.03 12.99 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.42 -10.78 8.89 -37.90 -0.34 -11.12 16 8 H 0.08 1.85 6.12 -52.49 -0.32 1.53 16 9 C 0.20 5.28 6.56 -84.61 -0.56 4.73 16 10 N -0.45 -12.33 8.03 -10.79 -0.09 -12.42 16 11 C 0.03 0.82 11.21 -17.33 -0.19 0.63 16 12 C -0.08 -1.94 11.22 -17.11 -0.19 -2.13 16 13 N -0.49 -11.67 7.92 -11.67 -0.09 -11.76 16 14 C 0.26 6.25 7.21 -154.82 -1.12 5.14 16 15 N -0.68 -13.78 5.71 -45.92 -0.26 -14.04 16 16 C 0.13 2.15 3.11 -130.42 -0.41 1.75 16 17 C -0.14 -1.88 10.10 -26.73 -0.27 -2.15 16 18 C -0.20 -2.50 7.10 -89.23 -0.63 -3.13 16 19 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 20 C 0.13 1.53 6.53 -2.41 -0.02 1.51 16 21 N -0.61 -9.60 3.32 -170.85 -0.57 -10.16 16 22 C 0.62 10.47 7.88 -12.86 -0.10 10.37 16 23 O -0.51 -10.59 17.13 5.19 0.09 -10.50 16 24 C -0.07 -0.90 6.98 -36.79 -0.26 -1.15 16 25 C -0.12 -1.50 10.62 -39.39 -0.42 -1.91 16 26 C -0.22 -1.97 10.87 -39.89 -0.43 -2.41 16 27 C -0.02 -0.13 12.08 29.63 0.36 0.23 16 28 O -0.16 -1.77 7.80 5.00 0.04 -1.73 16 29 C 0.15 2.61 5.87 -2.40 -0.01 2.60 16 30 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 31 H 0.12 2.69 8.06 -52.49 -0.42 2.27 16 32 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 33 H 0.41 7.83 6.81 -40.82 -0.28 7.55 16 34 H 0.11 1.37 8.14 -51.92 -0.42 0.95 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.00 5.55 -51.93 -0.29 0.71 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.21 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.11 2.33 6.48 -51.93 -0.34 1.99 16 LS Contribution 358.26 15.07 5.40 5.40 Total: -1.00 -32.70 358.26 -9.14 -41.83 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -4.59 Total: 13.89 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -4.68 Total: 4.56 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -0.37 Total: -66.44 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.13 Total: -12.24 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.70 -9.14 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163630211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.026 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds