Wall clock time and date at job start Tue Mar 31 2020 23:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86799 * 120.00132 * 2 1 4 4 H 1.48500 * 109.47281 * 269.99716 * 3 2 1 5 5 H 1.48498 * 109.47307 * 29.99918 * 3 2 1 6 6 H 1.48499 * 109.47008 * 150.00022 * 3 2 1 7 7 C 1.40118 * 119.99491 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99446 * 179.97438 * 7 2 1 9 9 C 1.40822 * 120.00205 * 359.97438 * 7 2 1 10 10 N 1.33907 * 120.27523 * 359.97438 * 9 7 2 11 11 C 1.31725 * 119.89113 * 180.02562 * 10 9 7 12 12 C 1.38962 * 120.47584 * 359.97438 * 11 10 9 13 13 N 1.32240 * 120.57212 * 0.02562 * 12 11 10 14 14 C 1.32624 * 120.08428 * 359.97438 * 13 12 11 15 15 N 1.37940 * 120.23210 * 179.97438 * 14 13 12 16 16 C 1.46495 * 120.00554 * 359.97438 * 15 14 13 17 17 C 1.52998 * 119.54593 * 250.71010 * 16 15 14 18 18 C 1.52999 * 60.55675 * 248.22929 * 17 16 15 19 19 H 1.09005 * 119.53668 * 111.76273 * 18 17 16 20 20 C 1.54380 * 118.90121 * 268.89908 * 18 17 16 21 21 N 1.48146 * 104.61719 * 87.21082 * 20 18 17 22 22 C 1.34777 * 127.83816 * 140.39601 * 21 20 18 23 23 O 1.21694 * 119.99936 * 179.97438 * 22 21 20 24 24 C 1.46660 * 119.99822 * 359.97438 * 22 21 20 25 25 C 1.36550 * 125.98402 * 179.72093 * 24 22 21 26 26 C 1.40364 * 106.70314 * 179.84741 * 25 24 22 27 27 C 1.35129 * 107.11800 * 0.40562 * 26 25 24 28 28 O 1.33930 * 108.76726 * 359.74601 * 27 26 25 29 29 C 1.48146 * 104.32721 * 320.41447 * 21 20 18 30 30 H 0.97006 * 119.99962 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.75791 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.71176 * 180.02562 * 12 11 10 33 33 H 0.97007 * 119.99384 * 180.02562 * 15 14 13 34 34 H 1.09008 * 117.43823 * 355.88398 * 17 16 15 35 35 H 1.09000 * 117.44739 * 140.57731 * 17 16 15 36 36 H 1.09001 * 110.41272 * 205.99682 * 20 18 17 37 37 H 1.09007 * 110.40531 * 328.31344 * 20 18 17 38 38 H 1.07990 * 126.64770 * 359.95093 * 25 24 22 39 39 H 1.07997 * 126.44134 * 180.15608 * 26 25 24 40 40 H 1.08002 * 125.62028 * 179.71183 * 27 26 25 41 41 H 1.08997 * 110.40819 * 280.80291 * 29 21 20 42 42 H 1.08998 * 110.41128 * 158.36942 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5389 1.4401 0.7000 7 6 2.0078 -1.2135 -0.0005 8 1 3.0878 -1.2135 -0.0010 9 6 1.3037 -2.4330 -0.0005 10 7 -0.0354 -2.4394 0.0005 11 6 -0.6864 -3.5845 0.0010 12 6 0.0064 -4.7891 -0.0001 13 7 1.3287 -4.8045 -0.0011 14 6 2.0068 -3.6647 -0.0016 15 7 3.3862 -3.6772 -0.0022 16 6 4.1072 -4.9524 -0.0016 17 6 4.8619 -5.3919 1.2547 18 6 5.6488 -5.0153 -0.0022 19 1 6.2607 -4.1132 -0.0029 20 6 6.0023 -6.1207 -1.0203 21 7 4.8283 -6.1884 -1.9213 22 6 4.8208 -6.3591 -3.2582 23 8 3.7644 -6.3940 -3.8613 24 6 6.0859 -6.5028 -3.9861 25 6 6.2205 -6.6859 -5.3326 26 6 7.5973 -6.7684 -5.5929 27 6 8.2343 -6.6429 -4.4078 28 8 7.3203 -6.4830 -3.4420 29 6 3.6642 -6.0255 -1.0195 30 1 -0.4850 0.8401 0.0004 31 1 -1.7664 -3.5871 0.0022 32 1 -0.5399 -5.7208 -0.0001 33 1 3.8787 -2.8415 -0.0022 34 1 4.8904 -4.6955 2.0928 35 1 4.8189 -6.4475 1.5231 36 1 6.8966 -5.8490 -1.5811 37 1 6.1485 -7.0735 -0.5114 38 1 5.4224 -6.7524 -6.0570 39 1 8.0603 -6.9100 -6.5582 40 1 9.3043 -6.6679 -4.2631 41 1 3.4433 -6.9637 -0.5107 42 1 2.7946 -5.6819 -1.5796 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163630211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:19 Heat of formation + Delta-G solvation = 69.429432 kcal Electronic energy + Delta-G solvation = -29034.907184 eV Core-core repulsion = 24982.891093 eV Total energy + Delta-G solvation = -4052.016091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.67587 -41.58824 -40.66318 -39.51098 -36.06176 -35.85019 -34.46642 -33.98949 -33.27763 -31.17840 -30.58861 -28.95543 -27.86616 -27.45125 -24.42286 -23.66957 -23.54852 -22.72488 -22.05070 -21.01424 -20.76418 -19.51856 -19.05336 -18.15776 -17.83078 -17.53516 -17.39162 -16.83517 -16.63045 -16.39458 -16.02743 -15.84195 -15.24258 -14.96467 -14.82276 -14.62085 -14.33325 -14.01866 -13.95302 -13.73341 -13.60834 -13.36112 -13.21038 -13.02655 -12.95873 -12.61481 -12.43367 -12.05664 -11.95067 -11.65489 -11.60312 -11.30461 -11.23076 -11.06922 -10.84038 -10.27727 -10.07225 -9.61399 -9.25287 -8.59935 -8.28286 -6.35739 -0.01401 0.78880 1.23294 1.40484 1.40584 1.46047 1.53077 1.55505 1.96932 2.01664 2.20482 2.47934 2.57413 2.86795 3.45004 3.50258 3.63000 3.87215 3.92609 3.94064 4.01936 4.10466 4.16581 4.29634 4.38397 4.47417 4.53545 4.61904 4.69687 4.82010 4.84107 4.85318 4.93237 4.98804 5.03200 5.11113 5.11799 5.18127 5.20571 5.41172 5.79347 5.85658 6.09440 6.25087 6.33062 6.64977 6.74636 6.80719 6.97282 7.59075 8.07822 8.41935 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.003255 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.614378 B = 8599.165462 C = 9206.487751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.021 3.979 3 Si 0.988 3.012 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.447 4.447 8 H 0.098 0.902 9 C 0.160 3.840 10 N -0.485 5.485 11 C 0.008 3.992 12 C -0.083 4.083 13 N -0.498 5.498 14 C 0.261 3.739 15 N -0.679 5.679 16 C 0.079 3.921 17 C -0.120 4.120 18 C -0.163 4.163 19 H 0.139 0.861 20 C 0.129 3.871 21 N -0.616 5.616 22 C 0.610 3.390 23 O -0.574 6.574 24 C -0.102 4.102 25 C -0.127 4.127 26 C -0.233 4.233 27 C 0.015 3.985 28 O -0.163 6.163 29 C 0.155 3.845 30 H 0.280 0.720 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.409 0.591 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.151 0.849 39 H 0.185 0.815 40 H 0.262 0.738 41 H 0.090 0.910 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.360 -9.983 -3.007 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.200 4.200 3 Si 0.808 3.192 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.169 1.169 7 C -0.482 4.482 8 H 0.116 0.884 9 C 0.026 3.974 10 N -0.203 5.203 11 C -0.154 4.154 12 C -0.237 4.237 13 N -0.220 5.220 14 C 0.015 3.985 15 N -0.318 5.318 16 C -0.011 4.011 17 C -0.160 4.160 18 C -0.183 4.183 19 H 0.156 0.844 20 C 0.008 3.992 21 N -0.347 5.347 22 C 0.401 3.599 23 O -0.456 6.456 24 C -0.154 4.154 25 C -0.148 4.148 26 C -0.252 4.252 27 C -0.054 4.054 28 O -0.058 6.058 29 C 0.032 3.968 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.170 0.830 33 H 0.248 0.752 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.169 0.831 39 H 0.202 0.798 40 H 0.277 0.723 41 H 0.108 0.892 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 20.487 -10.080 -3.115 23.044 hybrid contribution -0.680 1.040 -0.405 1.307 sum 19.807 -9.040 -3.520 22.055 Atomic orbital electron populations 1.70219 1.09122 1.29261 1.29353 1.27008 0.95684 1.04609 0.92720 0.85115 0.79279 0.75547 0.79266 1.19224 1.19546 1.16916 1.19649 0.94714 0.89795 1.44006 0.88404 1.19499 0.89724 0.92617 0.95602 1.69426 1.07173 1.26176 1.17536 1.23528 1.00808 0.90239 1.00841 1.22761 0.89849 0.98381 1.12682 1.67436 1.08994 1.27946 1.17578 1.19371 0.86139 0.90589 1.02449 1.42833 1.00485 1.05845 1.82623 1.21496 0.91333 0.87761 1.00514 1.23563 0.97675 1.03702 0.91083 1.24206 0.92621 1.02092 0.99353 0.84375 1.22248 0.88123 0.99025 0.89815 1.49305 1.10463 1.69703 1.05247 1.16612 0.86543 0.76506 0.80279 1.90872 1.32134 1.54488 1.68088 1.21462 0.83466 1.17042 0.93404 1.22240 0.99352 0.99380 0.93826 1.22199 0.91706 1.09633 1.01656 1.25514 0.96364 0.98319 0.85187 1.84117 1.14076 1.69954 1.37674 1.21589 0.88001 0.97599 0.89626 0.90986 0.83914 0.83040 0.75229 0.87106 0.86551 0.87153 0.87774 0.83114 0.79767 0.72270 0.89223 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.17 11.48 21.86 0.25 -40.92 16 2 C 0.02 1.08 5.50 85.31 0.47 1.55 16 3 Si 0.99 37.08 29.56 68.60 2.03 39.11 16 4 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.25 -8.52 7.11 99.48 0.71 -7.81 16 7 C -0.45 -23.38 8.89 23.36 0.21 -23.17 16 8 H 0.10 4.53 6.12 -2.91 -0.02 4.52 16 9 C 0.16 8.93 6.56 40.35 0.26 9.19 16 10 N -0.48 -28.10 8.03 -188.06 -1.51 -29.61 16 11 C 0.01 0.39 11.21 84.88 0.95 1.34 16 12 C -0.08 -3.99 11.22 84.81 0.95 -3.04 16 13 N -0.50 -24.56 7.92 -190.83 -1.51 -26.07 16 14 C 0.26 13.09 7.21 134.03 0.97 14.05 16 15 N -0.68 -27.67 5.71 -299.20 -1.71 -29.38 16 16 C 0.08 2.58 3.11 4.51 0.01 2.59 16 17 C -0.12 -2.80 10.10 30.59 0.31 -2.49 16 18 C -0.16 -3.60 7.10 -9.89 -0.07 -3.67 16 19 H 0.14 2.63 8.14 -2.38 -0.02 2.61 16 20 C 0.13 2.68 6.53 86.53 0.56 3.24 16 21 N -0.62 -19.17 3.32 -812.66 -2.69 -21.86 16 22 C 0.61 21.40 7.88 86.44 0.68 22.08 16 23 O -0.57 -25.49 17.13 -4.33 -0.07 -25.57 16 24 C -0.10 -2.73 6.98 24.08 0.17 -2.56 16 25 C -0.13 -2.96 10.62 22.39 0.24 -2.72 16 26 C -0.23 -3.32 10.87 22.07 0.24 -3.08 16 27 C 0.02 0.17 12.08 67.10 0.81 0.98 16 28 O -0.16 -3.05 7.80 -5.02 -0.04 -3.09 16 29 C 0.15 5.54 5.87 86.54 0.51 6.05 16 30 H 0.28 13.78 8.29 -92.70 -0.77 13.01 16 31 H 0.14 6.48 8.06 -2.91 -0.02 6.46 16 32 H 0.15 6.24 8.06 -2.91 -0.02 6.21 16 33 H 0.41 15.75 6.81 -92.70 -0.63 15.12 16 34 H 0.11 2.53 8.14 -2.38 -0.02 2.51 16 35 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.11 1.96 5.55 -2.39 -0.01 1.95 16 37 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.15 3.64 8.06 -2.92 -0.02 3.62 16 39 H 0.19 1.46 8.06 -2.91 -0.02 1.43 16 40 H 0.26 -0.09 8.06 -2.91 -0.02 -0.11 16 41 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.05 2.55 6.48 -2.39 -0.02 2.54 16 Total: -1.00 -79.00 358.26 2.47 -76.52 By element: Atomic # 1 Polarization: 40.09 SS G_CDS: 0.46 Total: 40.55 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 7.27 Total: 20.33 kcal Atomic # 7 Polarization: -140.68 SS G_CDS: -7.17 Total: -147.85 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.11 Total: -28.66 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Total: -79.00 2.47 -76.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163630211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.952 kcal (2) G-P(sol) polarization free energy of solvation -78.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds