Wall clock time and date at job start Tue Mar 31 2020 23:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00110 * 2 1 4 4 H 1.48508 * 109.46856 * 269.99608 * 3 2 1 5 5 H 1.48497 * 109.47014 * 29.99443 * 3 2 1 6 6 H 1.48492 * 109.47319 * 150.00022 * 3 2 1 7 7 C 1.37878 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99533 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99969 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46870 * 184.53248 * 9 7 2 11 11 C 1.46902 * 111.00212 * 193.09520 * 10 9 7 12 12 C 1.50701 * 109.47113 * 66.04315 * 11 10 9 13 13 C 1.38678 * 120.42245 * 269.72817 * 12 11 10 14 14 C 1.38624 * 118.41909 * 179.78238 * 13 12 11 15 15 C 1.38227 * 119.16192 * 0.50984 * 14 13 12 16 16 N 1.31851 * 120.76444 * 359.72692 * 15 14 13 17 17 C 1.31890 * 121.72515 * 359.97438 * 16 15 14 18 18 C 1.39233 * 111.00204 * 69.14184 * 10 9 7 19 19 N 1.32633 * 119.92416 * 58.69158 * 18 10 9 20 20 C 1.32061 * 121.95390 * 180.02562 * 19 18 10 21 21 C 1.38087 * 121.15278 * 359.97438 * 20 19 18 22 22 C 1.38964 * 118.90632 * 0.02562 * 21 20 19 23 23 C 1.39031 * 119.92855 * 238.42469 * 18 10 9 24 24 N 1.40301 * 121.50049 * 0.64634 * 23 18 10 25 25 C 1.35161 * 118.76665 * 194.68873 * 24 23 18 26 26 O 1.21312 * 120.09633 * 181.83316 * 25 24 23 27 27 C 1.50741 * 119.80704 * 1.85444 * 25 24 23 28 28 O 1.35521 * 121.58016 * 180.02562 * 22 21 20 29 29 H 0.96997 * 119.99536 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47457 * 64.53225 * 9 7 2 31 31 H 1.09001 * 109.46984 * 304.53028 * 9 7 2 32 32 H 1.09006 * 109.47013 * 306.04943 * 11 10 9 33 33 H 1.08999 * 109.47467 * 186.04606 * 11 10 9 34 34 H 1.07997 * 120.78363 * 0.02562 * 13 12 11 35 35 H 1.08003 * 120.41419 * 180.21879 * 14 13 12 36 36 H 1.08000 * 119.61368 * 179.75136 * 15 14 13 37 37 H 1.07993 * 119.61235 * 179.97438 * 17 16 15 38 38 H 1.07997 * 119.42240 * 179.97438 * 20 19 18 39 39 H 1.07995 * 120.54761 * 179.97438 * 21 20 19 40 40 H 0.97002 * 120.64510 * 14.44753 * 24 23 18 41 41 H 1.09004 * 109.42224 * 208.62050 * 27 25 24 42 42 H 1.09009 * 109.41957 * 88.80017 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5747 -0.1078 11 6 5.4360 -2.6502 0.1984 12 6 5.6591 -2.3040 1.6481 13 6 5.8921 -0.9910 2.0286 14 6 6.0874 -0.7187 3.3738 15 6 6.0543 -1.7591 4.2833 16 7 5.8349 -2.9966 3.8847 17 6 5.6391 -3.2917 2.6143 18 6 3.7317 -3.1018 -1.3680 19 7 4.2113 -2.5052 -2.4512 20 6 3.9801 -2.9701 -3.6654 21 6 3.2228 -4.1078 -3.8626 22 6 2.6995 -4.7664 -2.7565 23 6 2.9650 -4.2554 -1.4879 24 7 2.4371 -4.9051 -0.3621 25 6 1.9641 -6.1637 -0.4996 26 8 1.4720 -6.7358 0.4503 27 6 2.0503 -6.8547 -1.8365 28 8 1.9495 -5.8875 -2.8873 29 1 -0.4849 0.8401 -0.0004 30 1 3.8746 -0.7519 0.9289 31 1 3.8752 -0.6117 -0.8455 32 1 5.9795 -1.9456 -0.4311 33 1 5.7958 -3.6611 0.0068 34 1 5.9168 -0.1989 1.2949 35 1 6.2678 0.2929 3.7063 36 1 6.2095 -1.5558 5.3326 37 1 5.4628 -4.3173 2.3256 38 1 4.3906 -2.4514 -4.5192 39 1 3.0396 -4.4791 -4.8600 40 1 2.4150 -4.4609 0.5000 41 1 1.2352 -7.5729 -1.9265 42 1 3.0035 -7.3779 -1.9133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164006480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:45 Heat of formation + Delta-G solvation = 30.998465 kcal Electronic energy + Delta-G solvation = -29868.513247 eV Core-core repulsion = 25814.830664 eV Total energy + Delta-G solvation = -4053.682583 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.53787 -40.11219 -39.31639 -38.20084 -36.49483 -35.03893 -32.86185 -32.40808 -31.60263 -31.00421 -29.40293 -28.12628 -27.90297 -25.40783 -24.08537 -23.47790 -22.83679 -21.99224 -20.89254 -19.73308 -18.60401 -18.11927 -17.10102 -16.96477 -16.85666 -16.31958 -16.13786 -15.76406 -15.33268 -15.05505 -14.95429 -14.72464 -14.36708 -14.13521 -14.08224 -13.54696 -13.42600 -13.10400 -12.99537 -12.92921 -12.68865 -12.41664 -12.05465 -11.95635 -11.58729 -11.25470 -10.90718 -10.80270 -10.67740 -10.20724 -10.02582 -9.69708 -9.51204 -9.46527 -9.25491 -8.95107 -8.78015 -8.68778 -8.08096 -7.85505 -6.15728 -4.14674 1.08161 1.20191 1.33408 1.46606 2.42815 2.84714 3.20059 3.26140 3.27892 3.29126 3.76921 3.86287 4.07794 4.28657 4.32139 4.59733 4.67740 4.79251 4.86784 4.92497 4.98546 5.06574 5.13696 5.18116 5.19094 5.33101 5.34563 5.51057 5.71397 5.72162 5.83387 5.86399 5.94803 6.27353 6.33826 6.43897 6.55231 6.62559 6.82176 6.85899 6.95526 7.21529 7.29565 7.54420 7.78083 7.97692 8.13189 8.18212 8.44082 8.89019 9.43854 10.97084 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008489 B = 0.005361 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3297.786613 B = 5221.239697 C = 6707.748082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.077 0.923 9 C 0.163 3.837 10 N -0.480 5.480 11 C 0.103 3.897 12 C -0.119 4.119 13 C -0.060 4.060 14 C -0.174 4.174 15 C 0.093 3.907 16 N -0.488 5.488 17 C 0.117 3.883 18 C 0.338 3.662 19 N -0.497 5.497 20 C 0.118 3.882 21 C -0.177 4.177 22 C 0.119 3.881 23 C 0.070 3.930 24 N -0.631 5.631 25 C 0.485 3.515 26 O -0.517 6.517 27 C 0.051 3.949 28 O -0.298 6.298 29 H 0.265 0.735 30 H 0.040 0.960 31 H 0.010 0.990 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.146 0.854 40 H 0.432 0.568 41 H 0.144 0.856 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.832 -7.697 -4.422 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.095 0.905 9 C 0.038 3.962 10 N -0.204 5.204 11 C -0.024 4.024 12 C -0.121 4.121 13 C -0.086 4.086 14 C -0.194 4.194 15 C -0.064 4.064 16 N -0.197 5.197 17 C -0.040 4.040 18 C 0.107 3.893 19 N -0.211 5.211 20 C -0.042 4.042 21 C -0.198 4.198 22 C 0.064 3.936 23 C -0.030 4.030 24 N -0.279 5.279 25 C 0.271 3.729 26 O -0.393 6.393 27 C -0.027 4.027 28 O -0.211 6.211 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.179 0.821 39 H 0.164 0.836 40 H 0.274 0.726 41 H 0.162 0.838 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.454 -8.289 -3.063 15.271 hybrid contribution 0.034 1.821 -0.772 1.978 sum 12.488 -6.468 -3.835 14.577 Atomic orbital electron populations 1.69887 1.06131 1.26975 1.50126 1.24835 0.94696 0.98778 0.94542 0.86882 0.80261 0.84122 0.78611 1.20122 1.21098 1.19206 1.20889 0.88300 0.94787 1.51423 0.90515 1.20424 0.97341 0.81687 0.96715 1.60224 1.13707 1.26147 1.20303 1.20906 0.88687 1.01535 0.91298 1.20678 1.00332 0.94315 0.96797 1.21558 0.94368 0.96269 0.96412 1.22080 1.02530 1.00786 0.93998 1.22676 0.95712 0.88113 0.99898 1.67674 1.11844 1.21955 1.18196 1.22549 0.94415 0.99470 0.87613 1.19095 0.91864 0.89167 0.89165 1.67833 1.23261 1.30975 0.98990 1.22364 0.95031 0.92403 0.94361 1.21447 1.01070 0.99101 0.98209 1.18675 0.94103 0.88986 0.91819 1.18515 1.01145 0.96865 0.86514 1.43574 1.57985 1.14022 1.12304 1.21413 0.77918 0.82083 0.91460 1.90806 1.42802 1.64388 1.41258 1.23248 1.06422 0.90592 0.82484 1.86155 1.62435 1.27541 1.44948 0.92519 0.94265 0.97241 0.92493 0.90483 0.85030 0.85049 0.83134 0.83110 0.82121 0.83620 0.72551 0.83801 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.96 55.43 0.77 -26.20 16 2 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 20.95 27.38 -169.99 -4.65 16.30 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -5.99 6.67 56.52 0.38 -5.61 16 7 C -0.52 -14.02 9.31 -34.44 -0.32 -14.34 16 8 H 0.08 2.30 8.04 -52.49 -0.42 1.87 16 9 C 0.16 3.65 3.56 -4.98 -0.02 3.64 16 10 N -0.48 -9.02 3.82 -175.82 -0.67 -9.70 16 11 C 0.10 1.58 4.96 -4.97 -0.02 1.55 16 12 C -0.12 -1.81 4.92 -104.48 -0.51 -2.33 16 13 C -0.06 -0.89 8.03 -39.28 -0.32 -1.20 16 14 C -0.17 -2.32 10.11 -39.44 -0.40 -2.72 16 15 C 0.09 1.26 11.18 -17.55 -0.20 1.07 16 16 N -0.49 -7.58 10.36 -13.25 -0.14 -7.72 16 17 C 0.12 1.76 10.86 -17.55 -0.19 1.57 16 18 C 0.34 6.17 4.70 -154.63 -0.73 5.45 16 19 N -0.50 -8.60 9.55 -12.32 -0.12 -8.72 16 20 C 0.12 1.62 11.17 -17.51 -0.20 1.43 16 21 C -0.18 -2.29 10.10 -39.37 -0.40 -2.69 16 22 C 0.12 1.80 6.48 -38.91 -0.25 1.55 16 23 C 0.07 1.21 6.57 -83.28 -0.55 0.66 16 24 N -0.63 -10.91 5.44 -9.52 -0.05 -10.96 16 25 C 0.49 7.68 7.94 -10.79 -0.09 7.60 16 26 O -0.52 -9.62 17.95 5.53 0.10 -9.52 16 27 C 0.05 0.58 7.17 36.03 0.26 0.84 16 28 O -0.30 -4.08 10.47 -18.26 -0.19 -4.27 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.04 0.89 4.71 -51.93 -0.24 0.64 16 31 H 0.01 0.23 6.75 -51.93 -0.35 -0.12 16 32 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.08 1.03 8.01 -51.93 -0.42 0.62 16 34 H 0.13 1.90 7.84 -52.49 -0.41 1.49 16 35 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 38 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.43 8.12 8.36 -40.82 -0.34 7.78 16 41 H 0.14 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -34.12 359.01 -8.29 -42.41 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -4.72 Total: 8.91 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -4.02 Total: 4.06 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: -0.21 Total: -63.30 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.09 Total: -13.79 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.65 Total: 16.30 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.12 -8.29 -42.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164006480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.410 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds